Wall clock time and date at job start Tue Mar 31 2020 07:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.47295 * 2 1 4 4 C 1.35748 * 117.00275 * 180.02562 * 3 2 1 5 5 N 1.32259 * 120.11484 * 359.97438 * 4 3 2 6 6 C 1.32424 * 120.02010 * 179.97438 * 5 4 3 7 7 C 1.37949 * 120.25316 * 0.02562 * 6 5 4 8 8 N 1.32392 * 120.23891 * 359.97438 * 7 6 5 9 9 C 1.32453 * 119.97503 * 0.02562 * 8 7 6 10 10 N 1.39187 * 120.12733 * 180.02562 * 9 8 7 11 11 C 1.46900 * 110.99836 * 123.93219 * 10 9 8 12 12 C 1.50701 * 109.47303 * 170.00301 * 11 10 9 13 13 H 1.08003 * 119.99634 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00243 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99847 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00058 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47093 * 89.99783 * 16 14 12 18 18 H 1.48499 * 109.47081 * 210.00017 * 16 14 12 19 19 H 1.48500 * 109.46726 * 329.99732 * 16 14 12 20 20 C 1.46897 * 111.00056 * 359.97438 * 10 9 8 21 21 C 1.54269 * 110.03219 * 56.11672 * 20 10 9 22 22 C 1.54882 * 104.19546 * 217.10498 * 21 20 10 23 23 C 1.54886 * 102.74985 * 37.94747 * 22 21 20 24 24 C 1.53873 * 110.03183 * 298.95318 * 20 10 9 25 25 H 1.08996 * 109.47036 * 299.99842 * 1 2 3 26 26 H 1.09003 * 109.47077 * 60.00311 * 1 2 3 27 27 H 1.08999 * 109.46798 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47023 * 239.99678 * 2 1 3 29 29 H 1.09000 * 109.47215 * 120.00447 * 2 1 3 30 30 H 1.07998 * 119.87279 * 179.72722 * 6 5 4 31 31 H 1.08004 * 119.88072 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47243 * 290.00197 * 11 10 9 33 33 H 1.09004 * 109.47154 * 49.99882 * 11 10 9 34 34 H 0.97007 * 119.99559 * 180.02562 * 15 14 12 35 35 H 1.08997 * 110.01786 * 177.56112 * 20 10 9 36 36 H 1.08996 * 110.49005 * 335.78865 * 21 20 10 37 37 H 1.09009 * 110.48167 * 98.42663 * 21 20 10 38 38 H 1.09005 * 110.75919 * 279.62522 * 22 21 20 39 39 H 1.09001 * 110.75388 * 156.26340 * 22 21 20 40 40 H 1.09002 * 110.48474 * 203.38051 * 23 22 21 41 41 H 1.08997 * 110.48851 * 80.73126 * 23 22 21 42 42 H 1.09001 * 110.03431 * 238.56982 * 24 20 10 43 43 H 1.09001 * 110.03348 * 359.95190 * 24 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3522 1.5251 -0.0005 5 7 4.1600 0.4779 -0.0005 6 6 5.4725 0.6536 -0.0016 7 6 6.0033 1.9269 -0.0021 8 7 5.2041 2.9824 -0.0022 9 6 3.8899 2.8173 -0.0011 10 7 3.0467 3.9248 -0.0017 11 6 2.1180 3.8787 -1.1389 12 6 1.0692 4.9484 -0.9747 13 1 1.0903 5.5973 -0.1116 14 6 0.0823 5.0980 -1.9258 15 7 0.0564 4.3075 -2.9765 16 14 -1.2181 6.4236 -1.7219 17 1 -0.7521 7.6774 -2.3669 18 1 -2.4828 5.9787 -2.3604 19 1 -1.4529 6.6682 -0.2761 20 6 3.8189 5.1744 -0.0028 21 6 4.7837 5.1983 -1.2064 22 6 6.0581 5.8867 -0.6580 23 6 6.1564 5.3263 0.7826 24 6 4.6917 5.2558 1.2618 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 6.1299 -0.2032 0.0029 31 1 7.0747 2.0632 -0.0026 32 1 2.6681 4.0483 -2.0644 33 1 1.6372 2.9011 -1.1760 34 1 -0.6379 4.4130 -3.6458 35 1 3.1447 6.0296 -0.0468 36 1 5.0094 4.1837 -1.5346 37 1 4.3583 5.7792 -2.0248 38 1 5.9364 6.9699 -0.6437 39 1 6.9327 5.6030 -1.2434 40 1 6.7329 6.0008 1.4158 41 1 6.6038 4.3324 0.7756 42 1 4.4416 6.1510 1.8311 43 1 4.5417 4.3685 1.8768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166536853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:53 Heat of formation + Delta-G solvation = 16.504072 kcal Electronic energy + Delta-G solvation = -24955.695512 eV Core-core repulsion = 21615.547973 eV Total energy + Delta-G solvation = -3340.147539 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.56225 -40.01579 -39.15322 -36.36603 -34.89181 -34.26557 -32.61931 -30.76997 -29.65089 -29.09896 -27.81574 -25.46234 -24.90025 -23.71946 -23.21354 -21.48631 -20.70889 -19.42447 -18.91427 -18.40908 -17.51145 -17.31798 -16.65451 -16.31373 -15.95462 -15.73573 -15.70748 -15.10131 -14.59288 -14.45261 -14.32832 -14.18741 -13.57168 -13.42994 -13.34380 -13.07154 -12.81920 -12.69826 -12.60643 -12.26020 -12.21109 -12.02701 -11.84231 -11.79552 -11.73842 -11.57942 -11.46795 -11.30096 -11.07327 -10.63153 -10.17976 -9.93704 -8.61509 -8.21909 -6.30754 0.04774 0.25975 1.39061 1.40352 1.51920 2.04717 2.37300 2.71085 2.97639 3.12108 3.27749 3.56958 3.70992 3.91260 3.96330 4.06751 4.15328 4.23420 4.39247 4.43225 4.48261 4.65148 4.70588 4.77971 4.79157 4.82084 4.92868 4.96152 5.02612 5.08559 5.18725 5.24115 5.26911 5.33455 5.40385 5.42095 5.50625 5.64313 5.76145 5.95019 6.06564 6.22982 6.41164 6.66018 6.79794 6.97734 7.36529 8.89576 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.007961 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.944971 B = 3516.480290 C = 5392.267779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 O -0.306 6.306 4 C 0.233 3.767 5 N -0.495 5.495 6 C 0.045 3.955 7 C 0.026 3.974 8 N -0.433 5.433 9 C 0.243 3.757 10 N -0.466 5.466 11 C 0.214 3.786 12 C -0.522 4.522 13 H 0.059 0.941 14 C 0.009 3.991 15 N -0.928 5.928 16 Si 0.966 3.034 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.266 1.266 20 C 0.090 3.910 21 C -0.131 4.131 22 C -0.100 4.100 23 C -0.097 4.097 24 C -0.096 4.096 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.109 0.891 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.209 0.791 31 H 0.212 0.788 32 H -0.032 1.032 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.028 0.972 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.465 -5.729 6.710 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.013 4.013 3 O -0.212 6.212 4 C 0.048 3.952 5 N -0.225 5.225 6 C -0.113 4.113 7 C -0.133 4.133 8 N -0.155 5.155 9 C 0.006 3.994 10 N -0.182 5.182 11 C 0.091 3.909 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.189 4.189 15 N -0.568 5.568 16 Si 0.790 3.210 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.017 4.017 21 C -0.170 4.170 22 C -0.137 4.137 23 C -0.134 4.134 24 C -0.134 4.134 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.128 0.872 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.226 0.774 31 H 0.229 0.771 32 H -0.014 1.014 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.739 -5.552 6.987 14.746 hybrid contribution -0.857 0.283 -0.982 1.334 sum 10.882 -5.269 6.005 13.499 Atomic orbital electron populations 1.21784 0.92084 1.03891 1.02440 1.22737 0.95869 0.80796 1.01866 1.86580 1.16206 1.31082 1.87319 1.20514 0.85538 0.90307 0.98886 1.68035 1.07059 1.31620 1.15764 1.23915 0.89566 1.00054 0.97743 1.24179 1.02588 0.88382 0.98185 1.69097 1.00845 1.33509 1.12015 1.20360 0.89911 0.89788 0.99310 1.59400 1.15915 1.00718 1.42146 1.19557 0.89310 0.98439 0.83625 1.21292 1.11135 1.16438 1.07122 0.92241 1.25796 0.99898 0.98600 0.94638 1.70093 1.35224 1.39856 1.11661 0.85434 0.78090 0.78845 0.78590 1.19757 1.20525 1.19085 1.22313 0.93262 0.89897 0.96252 1.22794 0.97050 1.00331 0.96824 1.22242 0.95849 0.98851 0.96807 1.22250 0.94424 1.01796 0.94957 1.21999 0.95992 1.00187 0.95194 0.92141 0.93717 0.87245 0.92384 0.91028 0.77418 0.77146 1.01428 0.94490 0.92687 0.91412 0.92006 0.95355 0.91755 0.90742 0.91121 0.89761 0.91997 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 10.28 71.98 0.74 -3.69 16 2 C 0.06 2.13 6.05 71.98 0.44 2.56 16 3 O -0.31 -13.51 7.42 -90.73 -0.67 -14.19 16 4 C 0.23 9.61 7.20 85.05 0.61 10.22 16 5 N -0.49 -16.66 9.39 -307.77 -2.89 -19.55 16 6 C 0.05 1.11 11.20 84.53 0.95 2.06 16 7 C 0.03 0.62 10.78 84.54 0.91 1.53 16 8 N -0.43 -14.36 3.12 -192.19 -0.60 -14.96 16 9 C 0.24 10.11 4.98 133.19 0.66 10.77 16 10 N -0.47 -21.97 4.44 -677.16 -3.01 -24.97 16 11 C 0.21 11.93 4.31 85.56 0.37 12.30 16 12 C -0.52 -30.35 8.43 25.60 0.22 -30.13 16 13 H 0.06 3.43 7.16 -2.91 -0.02 3.41 16 14 C 0.01 0.54 5.46 84.65 0.46 1.00 16 15 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 16 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 C 0.09 3.75 2.81 45.64 0.13 3.88 16 21 C -0.13 -5.02 4.73 31.67 0.15 -4.87 16 22 C -0.10 -2.80 6.90 31.88 0.22 -2.58 16 23 C -0.10 -2.53 6.18 31.67 0.20 -2.34 16 24 C -0.10 -3.19 5.72 31.32 0.18 -3.01 16 25 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.06 1.93 8.11 -2.39 -0.02 1.91 16 29 H 0.07 2.17 8.11 -2.39 -0.02 2.16 16 30 H 0.21 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.21 2.91 8.06 -2.91 -0.02 2.89 16 32 H -0.03 -1.95 7.21 -2.39 -0.02 -1.97 16 33 H 0.04 2.24 5.34 -2.38 -0.01 2.22 16 34 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 35 H 0.07 3.12 6.76 -2.39 -0.02 3.11 16 36 H 0.06 2.52 5.42 -2.39 -0.01 2.50 16 37 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 2.11 5.94 -2.39 -0.01 2.09 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 1.64 6.99 -2.39 -0.02 1.62 16 Total: -1.00 -71.18 334.14 2.37 -68.81 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.00 Total: 16.20 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 6.23 Total: -2.30 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -6.21 Total: -115.56 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.67 Total: -14.19 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -71.18 2.37 -68.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166536853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.316 kcal (2) G-P(sol) polarization free energy of solvation -71.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds