Wall clock time and date at job start Tue Mar 31 2020 06:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47220 * 2 1 4 4 C 1.46499 * 119.99675 * 269.99689 * 3 2 1 5 5 C 1.50693 * 109.47328 * 269.99739 * 4 3 2 6 6 H 1.08006 * 119.99750 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00294 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00413 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99942 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47191 * 89.99980 * 9 7 5 11 11 H 1.48503 * 109.47385 * 210.00001 * 9 7 5 12 12 H 1.48503 * 109.47307 * 330.00000 * 9 7 5 13 13 C 1.38985 * 120.00112 * 89.99257 * 3 2 1 14 14 C 1.39003 * 119.65986 * 185.00301 * 13 3 2 15 15 C 1.38513 * 119.26048 * 180.02562 * 14 13 3 16 16 C 1.38549 * 118.58819 * 359.97438 * 15 14 13 17 17 C 1.38958 * 119.26400 * 0.02562 * 16 15 14 18 18 N 1.38998 * 119.65940 * 179.97438 * 17 16 15 19 19 C 1.47024 * 110.99270 * 56.32034 * 18 17 16 20 20 C 1.53103 * 109.24985 * 182.35020 * 19 18 17 21 21 O 1.43012 * 109.29295 * 303.21723 * 20 19 18 22 22 C 1.43011 * 113.74271 * 58.65008 * 21 20 19 23 23 C 1.47018 * 110.99772 * 179.97438 * 18 17 16 24 24 N 1.32470 * 119.66186 * 5.25704 * 13 3 2 25 25 H 1.09002 * 109.47245 * 300.00087 * 1 2 3 26 26 H 1.08998 * 109.46753 * 60.00559 * 1 2 3 27 27 H 1.09005 * 109.47068 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47600 * 239.99256 * 2 1 3 29 29 H 1.09005 * 109.47001 * 119.99158 * 2 1 3 30 30 H 1.09004 * 109.47149 * 29.99882 * 4 3 2 31 31 H 1.09002 * 109.46697 * 149.99486 * 4 3 2 32 32 H 0.97003 * 120.00419 * 180.02562 * 8 7 5 33 33 H 1.08004 * 120.36956 * 0.02562 * 14 13 3 34 34 H 1.08007 * 120.70045 * 179.97438 * 15 14 13 35 35 H 1.08003 * 120.36483 * 180.02562 * 16 15 14 36 36 H 1.08998 * 109.47369 * 62.43745 * 19 18 17 37 37 H 1.08998 * 109.54483 * 302.29952 * 19 18 17 38 38 H 1.09002 * 109.50635 * 183.25881 * 20 19 18 39 39 H 1.09003 * 109.50698 * 63.17493 * 20 19 18 40 40 H 1.08997 * 109.50806 * 61.26171 * 22 21 20 41 41 H 1.08997 * 109.50924 * 181.35636 * 22 21 20 42 42 H 1.08994 * 109.50209 * 57.67386 * 23 18 17 43 43 H 1.09003 * 109.54070 * 297.56352 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0960 7 6 4.1495 2.3903 -2.8774 8 7 5.3914 2.1833 -3.2572 9 14 3.0132 3.4357 -3.9288 10 1 3.1158 4.8559 -3.5070 11 1 3.4069 3.3134 -5.3554 12 1 1.6136 2.9690 -3.7598 13 6 2.2499 2.0365 1.2036 14 6 2.6126 3.3784 1.1976 15 6 2.8419 4.0231 2.4019 16 6 2.7000 3.3029 3.5770 17 6 2.3348 1.9637 3.5131 18 7 2.1907 1.2333 4.6868 19 6 1.2198 1.8709 5.5881 20 6 1.1357 1.0679 6.8890 21 8 0.7875 -0.2859 6.5870 22 6 1.7128 -0.9370 5.7123 23 6 1.8015 -0.1549 4.3990 24 7 2.1276 1.3745 2.3445 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.5818 1.6876 -2.0284 31 1 2.0955 3.1410 -1.1385 32 1 5.7177 2.5744 -4.0828 33 1 2.7145 3.9123 0.2644 34 1 3.1252 5.0651 2.4244 35 1 2.8714 3.7772 4.5321 36 1 0.2404 1.8931 5.1102 37 1 1.5410 2.8888 5.8089 38 1 0.3752 1.5035 7.5371 39 1 2.1013 1.0914 7.3943 40 1 2.6955 -0.9718 6.1825 41 1 1.3700 -1.9516 5.5098 42 1 2.5475 -0.6152 3.7513 43 1 0.8313 -0.1660 3.9022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591865.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:12 Heat of formation + Delta-G solvation = 20.353447 kcal Electronic energy + Delta-G solvation = -23878.581087 eV Core-core repulsion = 20538.600469 eV Total energy + Delta-G solvation = -3339.980618 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48680 -39.02786 -36.78843 -35.07437 -32.84660 -31.94655 -31.12715 -30.93027 -29.33322 -27.18448 -26.51169 -24.38689 -23.20391 -22.62312 -21.85163 -20.45335 -19.88801 -17.54872 -16.98278 -16.54650 -16.10170 -15.73237 -15.44570 -15.02994 -14.94031 -14.69282 -14.53393 -14.26930 -13.86553 -13.39096 -13.10848 -12.66950 -12.63337 -12.34016 -12.30517 -12.00161 -11.61060 -11.59671 -11.46652 -11.22689 -11.02068 -10.79956 -10.60694 -10.45598 -10.35004 -10.04317 -9.67975 -9.49730 -9.37193 -8.92481 -8.69259 -8.18160 -6.69139 -6.18505 -4.19207 1.79980 2.03429 3.18231 3.26052 3.26748 3.48372 3.70504 3.83444 4.28155 4.43109 4.65734 4.88767 4.93409 5.02412 5.11367 5.20029 5.26586 5.37250 5.45440 5.49774 5.55892 5.66608 5.70218 5.75966 5.78773 5.83109 5.88418 5.99699 6.07138 6.24007 6.32446 6.41379 6.56002 6.56702 6.68766 6.81096 6.85539 6.93613 6.96758 7.41437 7.46895 7.71432 8.23360 8.39239 8.74527 8.90027 9.40663 10.94524 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024967 B = 0.004143 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.193635 B = 6757.169898 C = 7244.190073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.126 3.874 3 N -0.581 5.581 4 C 0.224 3.776 5 C -0.536 4.536 6 H 0.077 0.923 7 C 0.075 3.925 8 N -0.893 5.893 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.443 3.557 14 C -0.249 4.249 15 C -0.022 4.022 16 C -0.264 4.264 17 C 0.345 3.655 18 N -0.476 5.476 19 C 0.025 3.975 20 C 0.064 3.936 21 O -0.387 6.387 22 C 0.060 3.940 23 C 0.034 3.966 24 N -0.582 5.582 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.029 0.971 32 H 0.266 0.734 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.657 -0.903 15.936 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.002 3.998 3 N -0.290 5.290 4 C 0.103 3.897 5 C -0.575 4.575 6 H 0.095 0.905 7 C -0.128 4.128 8 N -0.531 5.531 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.190 1.190 13 C 0.206 3.794 14 C -0.275 4.275 15 C -0.048 4.048 16 C -0.290 4.290 17 C 0.113 3.887 18 N -0.195 5.195 19 C -0.102 4.102 20 C -0.013 4.013 21 O -0.306 6.306 22 C -0.017 4.017 23 C -0.094 4.094 24 N -0.306 5.306 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.154 0.846 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.511 -1.970 15.890 18.624 hybrid contribution -0.411 1.603 -1.283 2.093 sum -9.922 -0.368 14.608 17.662 Atomic orbital electron populations 1.22145 0.97417 1.00985 1.01510 1.21196 0.92727 0.83277 1.02569 1.46744 1.66491 1.12922 1.02809 1.19735 0.97443 0.92520 0.80048 1.21431 0.95294 1.33306 1.07461 0.90516 1.24873 0.94924 0.95889 0.97162 1.69894 1.15128 1.44541 1.23493 0.86926 0.81612 0.81354 0.80300 1.19867 1.20879 1.18963 1.18047 0.88007 0.88072 0.85284 1.21463 1.11589 0.94908 0.99540 1.21049 0.93186 0.99094 0.91445 1.20936 1.14872 0.94268 0.98888 1.19188 0.92745 0.89512 0.87262 1.59445 1.45063 1.03198 1.11802 1.22899 0.94161 0.99354 0.93788 1.22681 1.01415 0.82129 0.95060 1.87973 1.50147 1.25459 1.66989 1.22805 0.93491 0.96158 0.89247 1.22585 1.02061 0.87506 0.97234 1.66893 1.27228 1.39380 0.97115 0.93158 0.93018 0.92499 0.90842 0.90688 0.94921 0.95336 0.92426 0.84584 0.85603 0.86144 0.93080 0.88809 0.88199 0.92101 0.92338 0.88199 0.88612 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 10.24 37.16 0.38 -2.10 16 2 C 0.13 2.29 6.19 -4.04 -0.03 2.26 16 3 N -0.58 -12.17 2.57 -175.23 -0.45 -12.62 16 4 C 0.22 5.14 4.07 -5.20 -0.02 5.12 16 5 C -0.54 -14.67 9.94 -34.45 -0.34 -15.01 16 6 H 0.08 2.38 8.06 -52.48 -0.42 1.95 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 9 Si 0.87 20.26 27.47 -169.99 -4.67 15.59 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 13 C 0.44 9.06 7.37 -155.03 -1.14 7.92 16 14 C -0.25 -4.86 9.27 -39.20 -0.36 -5.23 16 15 C -0.02 -0.36 10.16 -39.37 -0.40 -0.76 16 16 C -0.26 -4.13 9.22 -39.20 -0.36 -4.49 16 17 C 0.35 5.80 6.40 -155.01 -0.99 4.81 16 18 N -0.48 -6.73 4.75 -172.91 -0.82 -7.55 16 19 C 0.02 0.28 5.39 -3.70 -0.02 0.26 16 20 C 0.06 0.62 7.01 37.21 0.26 0.88 16 21 O -0.39 -4.54 10.83 -35.23 -0.38 -4.92 16 22 C 0.06 0.65 7.01 37.21 0.26 0.91 16 23 C 0.03 0.45 4.82 -3.71 -0.02 0.43 16 24 N -0.58 -10.96 7.42 -11.62 -0.09 -11.05 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 29 H 0.07 1.35 7.29 -51.93 -0.38 0.97 16 30 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 31 H 0.03 0.65 5.40 -51.93 -0.28 0.37 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.14 2.75 6.01 -52.48 -0.32 2.43 16 34 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 35 H 0.12 1.57 7.18 -52.48 -0.38 1.19 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.92 6.82 -51.93 -0.35 0.56 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.10 1.39 7.85 -51.93 -0.41 0.99 16 43 H 0.06 0.83 8.03 -51.93 -0.42 0.42 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -30.79 343.63 -10.05 -40.84 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.71 Total: 3.37 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.88 Total: -3.03 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.58 Total: -57.04 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.38 Total: -4.92 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.79 -10.05 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591865.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.197 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds