Wall clock time and date at job start Tue Mar 31 2020 06:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47220 * 2 1 4 4 C 1.46499 * 119.99675 * 269.99689 * 3 2 1 5 5 C 1.50693 * 109.47328 * 269.99739 * 4 3 2 6 6 H 1.08006 * 119.99750 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00294 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00413 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99942 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47191 * 89.99980 * 9 7 5 11 11 H 1.48503 * 109.47385 * 210.00001 * 9 7 5 12 12 H 1.48503 * 109.47307 * 330.00000 * 9 7 5 13 13 C 1.38985 * 120.00112 * 89.99257 * 3 2 1 14 14 C 1.39003 * 119.65986 * 185.00301 * 13 3 2 15 15 C 1.38513 * 119.26048 * 180.02562 * 14 13 3 16 16 C 1.38549 * 118.58819 * 359.97438 * 15 14 13 17 17 C 1.38958 * 119.26400 * 0.02562 * 16 15 14 18 18 N 1.38998 * 119.65940 * 179.97438 * 17 16 15 19 19 C 1.47024 * 110.99270 * 56.32034 * 18 17 16 20 20 C 1.53103 * 109.24985 * 182.35020 * 19 18 17 21 21 O 1.43012 * 109.29295 * 303.21723 * 20 19 18 22 22 C 1.43011 * 113.74271 * 58.65008 * 21 20 19 23 23 C 1.47018 * 110.99772 * 179.97438 * 18 17 16 24 24 N 1.32470 * 119.66186 * 5.25704 * 13 3 2 25 25 H 1.09002 * 109.47245 * 300.00087 * 1 2 3 26 26 H 1.08998 * 109.46753 * 60.00559 * 1 2 3 27 27 H 1.09005 * 109.47068 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47600 * 239.99256 * 2 1 3 29 29 H 1.09005 * 109.47001 * 119.99158 * 2 1 3 30 30 H 1.09004 * 109.47149 * 29.99882 * 4 3 2 31 31 H 1.09002 * 109.46697 * 149.99486 * 4 3 2 32 32 H 0.97003 * 120.00419 * 180.02562 * 8 7 5 33 33 H 1.08004 * 120.36956 * 0.02562 * 14 13 3 34 34 H 1.08007 * 120.70045 * 179.97438 * 15 14 13 35 35 H 1.08003 * 120.36483 * 180.02562 * 16 15 14 36 36 H 1.08998 * 109.47369 * 62.43745 * 19 18 17 37 37 H 1.08998 * 109.54483 * 302.29952 * 19 18 17 38 38 H 1.09002 * 109.50635 * 183.25881 * 20 19 18 39 39 H 1.09003 * 109.50698 * 63.17493 * 20 19 18 40 40 H 1.08997 * 109.50806 * 61.26171 * 22 21 20 41 41 H 1.08997 * 109.50924 * 181.35636 * 22 21 20 42 42 H 1.08994 * 109.50209 * 57.67386 * 23 18 17 43 43 H 1.09003 * 109.54070 * 297.56352 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0960 7 6 4.1495 2.3903 -2.8774 8 7 5.3914 2.1833 -3.2572 9 14 3.0132 3.4357 -3.9288 10 1 3.1158 4.8559 -3.5070 11 1 3.4069 3.3134 -5.3554 12 1 1.6136 2.9690 -3.7598 13 6 2.2499 2.0365 1.2036 14 6 2.6126 3.3784 1.1976 15 6 2.8419 4.0231 2.4019 16 6 2.7000 3.3029 3.5770 17 6 2.3348 1.9637 3.5131 18 7 2.1907 1.2333 4.6868 19 6 1.2198 1.8709 5.5881 20 6 1.1357 1.0679 6.8890 21 8 0.7875 -0.2859 6.5870 22 6 1.7128 -0.9370 5.7123 23 6 1.8015 -0.1549 4.3990 24 7 2.1276 1.3745 2.3445 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.5818 1.6876 -2.0284 31 1 2.0955 3.1410 -1.1385 32 1 5.7177 2.5744 -4.0828 33 1 2.7145 3.9123 0.2644 34 1 3.1252 5.0651 2.4244 35 1 2.8714 3.7772 4.5321 36 1 0.2404 1.8931 5.1102 37 1 1.5410 2.8888 5.8089 38 1 0.3752 1.5035 7.5371 39 1 2.1013 1.0914 7.3943 40 1 2.6955 -0.9718 6.1825 41 1 1.3700 -1.9516 5.5098 42 1 2.5475 -0.6152 3.7513 43 1 0.8313 -0.1660 3.9022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591865.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:11 Heat of formation + Delta-G solvation = 1.470712 kcal Electronic energy + Delta-G solvation = -23879.399904 eV Core-core repulsion = 20538.600469 eV Total energy + Delta-G solvation = -3340.799435 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.70591 -40.17009 -38.14891 -36.28284 -34.85131 -33.27804 -32.42518 -32.07842 -30.83158 -28.78381 -27.66876 -25.45135 -24.83226 -24.02289 -23.13704 -21.59459 -21.29026 -19.08798 -18.80509 -17.84363 -17.14929 -16.91631 -16.77013 -16.33164 -16.05991 -15.97415 -15.86950 -15.62503 -15.10294 -14.77428 -14.69139 -14.31388 -13.91639 -13.87173 -13.52339 -13.31532 -13.13564 -12.82142 -12.64749 -12.50489 -12.36067 -12.28580 -12.11442 -11.84597 -11.72384 -11.67170 -11.26336 -10.83084 -10.79795 -10.58706 -10.30290 -9.50449 -8.34063 -8.18217 -6.40321 0.44060 0.66744 1.35790 1.36907 1.47417 2.15659 2.30844 2.51426 2.91916 3.00118 3.05743 3.62704 3.89629 3.98634 4.06229 4.15819 4.20167 4.27819 4.34058 4.36950 4.39463 4.44348 4.54515 4.60221 4.62788 4.72169 4.78410 4.81745 4.83953 4.91380 4.97190 4.97752 5.02710 5.15169 5.29142 5.43254 5.52399 5.54751 5.61196 6.01532 6.13363 6.13660 6.39575 6.63411 6.72830 7.20800 7.35490 8.83827 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024967 B = 0.004143 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.193635 B = 6757.169898 C = 7244.190073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.125 3.875 3 N -0.597 5.597 4 C 0.237 3.763 5 C -0.539 4.539 6 H 0.021 0.979 7 C 0.015 3.985 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.242 1.242 13 C 0.419 3.581 14 C -0.281 4.281 15 C -0.015 4.015 16 C -0.255 4.255 17 C 0.334 3.666 18 N -0.478 5.478 19 C 0.024 3.976 20 C 0.064 3.936 21 O -0.400 6.400 22 C 0.067 3.933 23 C 0.038 3.962 24 N -0.592 5.592 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.269 0.731 33 H 0.122 0.878 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.040 0.960 37 H 0.113 0.887 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.117 0.883 42 H 0.076 0.924 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.588 0.336 17.753 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.002 3.998 3 N -0.307 5.307 4 C 0.114 3.886 5 C -0.578 4.578 6 H 0.039 0.961 7 C -0.183 4.183 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.186 1.186 11 H -0.207 1.207 12 H -0.165 1.165 13 C 0.183 3.817 14 C -0.307 4.307 15 C -0.040 4.040 16 C -0.280 4.280 17 C 0.101 3.899 18 N -0.196 5.196 19 C -0.102 4.102 20 C -0.012 4.012 21 O -0.319 6.319 22 C -0.010 4.010 23 C -0.090 4.090 24 N -0.317 5.317 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.140 0.860 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.058 0.942 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.135 0.865 42 H 0.095 0.905 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.463 -0.743 17.766 21.157 hybrid contribution 0.293 1.166 -1.636 2.030 sum -11.170 0.423 16.130 19.625 Atomic orbital electron populations 1.21995 0.94847 1.02570 1.01033 1.21262 0.94733 0.82143 1.01660 1.46695 1.67764 1.13736 1.02479 1.19431 0.94472 0.93307 0.81360 1.21584 0.96945 1.32268 1.06960 0.96081 1.25850 0.96576 0.97280 0.98599 1.70065 1.17647 1.46381 1.24425 0.85729 0.80131 0.79515 0.77721 1.18620 1.20696 1.16478 1.18269 0.89154 0.88702 0.85581 1.21535 1.13797 0.94968 1.00361 1.21432 0.91555 1.00587 0.90448 1.21328 1.12950 0.93683 1.00088 1.19719 0.92187 0.90487 0.87489 1.59544 1.45896 1.03437 1.10750 1.23065 0.92834 1.00596 0.93707 1.22884 1.03032 0.80962 0.94347 1.87965 1.50578 1.26552 1.66804 1.22803 0.94016 0.96432 0.87710 1.22530 1.00407 0.87595 0.98458 1.66894 1.27547 1.39816 0.97421 0.93872 0.93044 0.89842 0.92058 0.91228 0.94052 0.94424 0.92232 0.86034 0.82300 0.82737 0.94159 0.86845 0.85446 0.91084 0.91572 0.86533 0.90545 0.94054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 10.24 71.98 0.74 -3.64 16 2 C 0.13 4.68 6.19 86.38 0.53 5.21 16 3 N -0.60 -25.76 2.57 -708.32 -1.82 -27.58 16 4 C 0.24 11.05 4.07 85.63 0.35 11.40 16 5 C -0.54 -30.79 9.94 25.60 0.25 -30.53 16 6 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 7 C 0.02 0.87 5.47 84.65 0.46 1.33 16 8 N -0.95 -58.47 13.96 21.44 0.30 -58.17 16 9 Si 0.95 41.88 27.47 68.60 1.88 43.76 16 10 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 12 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 13 C 0.42 17.52 7.37 133.02 0.98 18.50 16 14 C -0.28 -11.04 9.27 22.52 0.21 -10.83 16 15 C -0.01 -0.45 10.16 22.41 0.23 -0.23 16 16 C -0.26 -7.40 9.22 22.52 0.21 -7.19 16 17 C 0.33 10.91 6.40 132.99 0.85 11.76 16 18 N -0.48 -12.78 4.75 -700.95 -3.33 -16.11 16 19 C 0.02 0.47 5.39 86.31 0.47 0.94 16 20 C 0.06 1.03 7.01 72.02 0.50 1.53 16 21 O -0.40 -8.41 10.83 -148.98 -1.61 -10.02 16 22 C 0.07 1.35 7.01 72.02 0.50 1.85 16 23 C 0.04 0.99 4.82 86.31 0.42 1.41 16 24 N -0.59 -22.62 7.42 -190.69 -1.41 -24.04 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.06 2.37 8.07 -2.39 -0.02 2.35 16 29 H 0.07 2.62 7.29 -2.38 -0.02 2.60 16 30 H 0.04 1.85 7.13 -2.38 -0.02 1.84 16 31 H 0.04 1.70 5.40 -2.39 -0.01 1.69 16 32 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.12 5.02 6.01 -2.91 -0.02 5.01 16 34 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 35 H 0.16 3.38 7.18 -2.91 -0.02 3.36 16 36 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.11 1.79 6.82 -2.39 -0.02 1.77 16 38 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.08 2.28 7.85 -2.39 -0.02 2.26 16 43 H 0.04 1.21 8.03 -2.39 -0.02 1.19 16 Total: -1.00 -70.26 343.63 1.64 -68.62 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.93 Total: 22.04 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 6.70 Total: 1.50 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -6.27 Total: -125.90 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -1.61 Total: -10.02 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.88 Total: 43.76 kcal Total: -70.26 1.64 -68.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591865.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.088 kcal (2) G-P(sol) polarization free energy of solvation -70.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds