Wall clock time and date at job start Tue Mar 31 2020 07:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36895 * 120.00055 * 2 1 4 4 H 1.08001 * 120.00108 * 158.51576 * 3 2 1 5 5 C 1.38783 * 119.99834 * 338.24146 * 3 2 1 6 6 N 1.31592 * 120.00350 * 350.39953 * 5 3 2 7 7 Si 1.86804 * 119.99976 * 170.39328 * 5 3 2 8 8 H 1.48501 * 109.46943 * 90.00183 * 7 5 3 9 9 H 1.48505 * 109.47255 * 210.00079 * 7 5 3 10 10 H 1.48503 * 109.47267 * 330.00175 * 7 5 3 11 11 C 1.38956 * 120.00224 * 180.02562 * 2 1 3 12 12 C 1.39221 * 119.64947 * 184.72817 * 11 2 1 13 13 C 1.38272 * 119.14788 * 179.72599 * 12 11 2 14 14 C 1.39299 * 118.45783 * 0.53737 * 13 12 11 15 15 O 1.35968 * 120.38280 * 179.74917 * 14 13 12 16 16 C 1.42900 * 116.99895 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47135 * 179.97438 * 16 15 14 18 18 C 1.53114 * 109.52414 * 294.68236 * 17 16 15 19 19 C 1.53035 * 109.27832 * 182.43973 * 18 17 16 20 20 N 1.46840 * 109.52609 * 59.17785 * 19 18 17 21 21 C 1.46841 * 111.19905 * 298.26044 * 20 19 18 22 22 C 1.53042 * 109.52520 * 61.73794 * 21 20 19 23 23 C 1.38624 * 119.23254 * 359.72405 * 14 13 12 24 24 N 1.31884 * 120.78253 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47082 * 85.88699 * 1 2 3 26 26 H 1.09001 * 109.46974 * 205.88455 * 1 2 3 27 27 H 1.08997 * 109.47467 * 325.88667 * 1 2 3 28 28 H 0.97000 * 120.00189 * 180.02562 * 6 5 3 29 29 H 1.07996 * 120.42982 * 359.97438 * 12 11 2 30 30 H 1.07994 * 120.76774 * 180.23186 * 13 12 11 31 31 H 1.08999 * 109.46905 * 299.99740 * 16 15 14 32 32 H 1.08999 * 109.47360 * 59.99746 * 16 15 14 33 33 H 1.09000 * 109.51879 * 54.87165 * 17 16 15 34 34 H 1.08997 * 109.50366 * 302.38131 * 18 17 16 35 35 H 1.08998 * 109.50375 * 62.49457 * 18 17 16 36 36 H 1.09004 * 109.46181 * 299.16054 * 19 18 17 37 37 H 1.09006 * 109.45976 * 179.19676 * 19 18 17 38 38 H 1.00902 * 111.00153 * 62.35487 * 20 19 18 39 39 H 1.08998 * 109.46202 * 301.72427 * 21 20 19 40 40 H 1.09005 * 109.45677 * 181.74883 * 21 20 19 41 41 H 1.08997 * 109.50186 * 180.88108 * 22 21 20 42 42 H 1.09000 * 109.49901 * 60.76371 * 22 21 20 43 43 H 1.08002 * 119.61101 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1494 1.1855 0.0000 4 1 3.1731 1.2180 0.3426 5 6 1.5296 2.3446 -0.4455 6 7 0.3584 2.2771 -1.0416 7 14 2.3580 4.0007 -0.1990 8 1 3.2158 4.3046 -1.3725 9 1 1.3227 5.0557 -0.0561 10 1 3.1941 3.9583 1.0275 11 6 2.1598 -1.2034 -0.0005 12 6 3.5484 -1.1969 0.0992 13 6 4.2289 -2.4006 0.1034 14 6 3.4940 -3.5790 -0.0044 15 8 4.1236 -4.7841 -0.0094 16 6 3.2995 -5.9461 -0.1227 17 6 4.1790 -7.1980 -0.1115 18 6 5.0626 -7.2138 -1.3619 19 6 5.8954 -8.4976 -1.3758 20 7 5.0015 -9.6626 -1.3716 21 6 4.1764 -9.6944 -0.1574 22 6 3.2922 -8.4462 -0.1070 23 6 2.1132 -3.5088 -0.1059 24 7 1.4945 -2.3441 -0.1018 25 1 -0.3633 0.0737 -1.0250 26 1 -0.3633 -0.9246 0.4486 27 1 -0.3634 0.8508 0.5763 28 1 -0.0746 3.0872 -1.3533 29 1 4.0869 -0.2640 0.1764 30 1 5.3056 -2.4262 0.1834 31 1 2.6049 -5.9821 0.7165 32 1 2.7391 -5.9045 -1.0567 33 1 4.8069 -7.1941 0.7794 34 1 4.4344 -7.1779 -2.2519 35 1 5.7265 -6.3494 -1.3493 36 1 6.5335 -8.5263 -0.4925 37 1 6.5153 -8.5187 -2.2722 38 1 4.4261 -9.6799 -2.2003 39 1 4.8224 -9.7174 0.7202 40 1 3.5475 -10.5846 -0.1689 41 1 2.6913 -8.4624 0.8022 42 1 2.6362 -8.4297 -0.9773 43 1 1.5374 -4.4186 -0.1902 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166802286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:21 Heat of formation + Delta-G solvation = 7.515084 kcal Electronic energy + Delta-G solvation = -22801.386131 eV Core-core repulsion = 19460.848800 eV Total energy + Delta-G solvation = -3340.537331 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.82681 -39.04506 -37.53803 -35.49462 -32.97024 -31.80033 -31.30213 -31.06325 -28.29354 -26.71343 -26.41693 -23.91883 -23.13752 -22.99176 -21.57771 -20.83964 -20.31098 -17.63354 -17.48047 -16.39633 -16.02183 -15.88030 -15.26098 -14.91339 -14.68743 -14.53877 -14.20293 -13.75694 -13.64375 -13.46246 -13.21754 -12.61184 -12.48504 -12.43474 -12.21792 -11.96574 -11.73168 -11.47640 -11.36336 -11.20792 -11.12367 -10.94283 -10.77471 -10.67059 -10.43890 -10.42831 -10.35286 -9.33051 -8.77765 -8.64195 -8.45951 -8.34002 -6.67294 -6.35474 -3.82608 2.21020 2.44109 3.11683 3.14630 3.18097 3.65576 3.97291 4.06947 4.47454 4.67135 4.68080 4.72784 4.81401 4.88794 5.12816 5.14480 5.15580 5.23620 5.37804 5.41993 5.46358 5.60090 5.62472 5.67282 5.70969 5.78510 5.83952 5.99718 6.06138 6.17321 6.32549 6.48477 6.71143 6.74934 6.87717 6.95535 7.02586 7.09364 7.31799 7.37309 7.42479 7.84728 8.13021 8.47363 8.95519 9.22733 9.70409 10.57299 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.042170 B = 0.002726 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.825678 B =10270.738978 C =10673.816076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.426 5.426 3 C -0.307 4.307 4 H 0.098 0.902 5 C 0.029 3.971 6 N -0.871 5.871 7 Si 0.931 3.069 8 H -0.276 1.276 9 H -0.281 1.281 10 H -0.268 1.268 11 C 0.349 3.651 12 C -0.220 4.220 13 C -0.054 4.054 14 C -0.062 4.062 15 O -0.321 6.321 16 C 0.070 3.930 17 C -0.083 4.083 18 C -0.150 4.150 19 C 0.056 3.944 20 N -0.689 5.689 21 C 0.059 3.941 22 C -0.152 4.152 23 C 0.085 3.915 24 N -0.545 5.545 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.060 0.940 28 H 0.270 0.730 29 H 0.131 0.869 30 H 0.120 0.880 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.340 0.660 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 -16.989 0.865 18.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.118 5.118 3 C -0.436 4.436 4 H 0.116 0.884 5 C -0.176 4.176 6 N -0.508 5.508 7 Si 0.757 3.243 8 H -0.201 1.201 9 H -0.206 1.206 10 H -0.193 1.193 11 C 0.108 3.892 12 C -0.248 4.248 13 C -0.080 4.080 14 C -0.113 4.113 15 O -0.235 6.235 16 C -0.006 4.006 17 C -0.102 4.102 18 C -0.189 4.189 19 C -0.074 4.074 20 N -0.317 5.317 21 C -0.071 4.071 22 C -0.191 4.191 23 C -0.076 4.076 24 N -0.267 5.267 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.138 0.862 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.157 0.843 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.428 -16.957 0.979 17.832 hybrid contribution 0.186 1.634 -0.142 1.651 sum 5.614 -15.323 0.837 16.341 Atomic orbital electron populations 1.21319 0.79701 0.98462 1.01560 1.42440 1.05000 1.00950 1.63363 1.19625 0.99027 0.83820 1.41144 0.88400 1.25399 0.96572 1.00186 0.95471 1.70133 1.15440 1.29382 1.35809 0.85859 0.78760 0.80729 0.78982 1.20144 1.20621 1.19303 1.18418 0.88303 0.86245 0.96185 1.21071 0.93645 0.97612 1.12424 1.20363 0.98892 0.89564 0.99133 1.19230 0.92271 0.85070 1.14747 1.85886 1.35026 1.11711 1.90873 1.22563 0.93253 0.84347 1.00464 1.21134 0.96959 0.92536 0.99548 1.22260 0.99455 0.99817 0.97381 1.22050 0.95230 0.87494 1.02626 1.60673 1.24030 1.42065 1.04931 1.22001 0.95032 0.96378 0.93709 1.22258 0.98654 0.95346 1.02872 1.22153 0.90301 0.95349 0.99837 1.67017 1.39822 0.97053 1.22792 0.92837 0.94493 0.92134 0.91989 0.85145 0.86207 0.92927 0.93044 0.90222 0.92062 0.90348 0.90906 0.90719 0.84285 0.90839 0.90627 0.91045 0.91660 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.31 8.70 59.84 0.52 3.83 16 2 N -0.43 -11.09 3.13 -122.43 -0.38 -11.48 16 3 C -0.31 -8.00 9.14 -15.09 -0.14 -8.14 16 4 H 0.10 2.42 5.95 -52.49 -0.31 2.11 16 5 C 0.03 0.73 5.16 -17.45 -0.09 0.64 16 6 N -0.87 -23.08 10.46 55.49 0.58 -22.50 16 7 Si 0.93 19.61 29.56 -169.99 -5.03 14.59 16 8 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 9 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 10 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 11 C 0.35 8.55 7.34 -154.99 -1.14 7.42 16 12 C -0.22 -4.87 9.31 -39.20 -0.37 -5.23 16 13 C -0.05 -1.06 10.12 -39.17 -0.40 -1.45 16 14 C -0.06 -1.20 6.71 -39.04 -0.26 -1.46 16 15 O -0.32 -5.34 9.75 -19.64 -0.19 -5.53 16 16 C 0.07 0.90 4.13 37.16 0.15 1.05 16 17 C -0.08 -0.85 2.49 -90.50 -0.23 -1.08 16 18 C -0.15 -1.48 5.23 -26.65 -0.14 -1.62 16 19 C 0.06 0.47 6.55 -3.84 -0.03 0.45 16 20 N -0.69 -5.64 6.87 -113.82 -0.78 -6.43 16 21 C 0.06 0.44 6.55 -3.83 -0.03 0.42 16 22 C -0.15 -1.23 5.36 -26.65 -0.14 -1.38 16 23 C 0.09 1.70 10.21 -17.39 -0.18 1.52 16 24 N -0.54 -12.69 9.08 -12.29 -0.11 -12.81 16 25 H 0.05 1.40 7.45 -51.93 -0.39 1.01 16 26 H 0.04 0.86 7.32 -51.93 -0.38 0.48 16 27 H 0.06 1.52 7.09 -51.93 -0.37 1.15 16 28 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.13 2.79 6.07 -52.49 -0.32 2.48 16 30 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 31 H 0.05 0.66 7.68 -51.93 -0.40 0.26 16 32 H 0.05 0.66 7.67 -51.93 -0.40 0.26 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.89 7.91 -51.93 -0.41 0.48 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.34 2.48 8.86 -39.29 -0.35 2.13 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.13 2.26 6.30 -52.49 -0.33 1.93 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -28.48 340.99 -9.82 -38.30 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.59 Total: 5.74 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.45 Total: -5.03 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.70 Total: -53.21 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.19 Total: -5.53 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.48 -9.82 -38.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.811 kcal (2) G-P(sol) polarization free energy of solvation -28.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds