Wall clock time and date at job start Tue Mar 31 2020 07:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36895 * 120.00055 * 2 1 4 4 H 1.08001 * 120.00108 * 158.51576 * 3 2 1 5 5 C 1.38783 * 119.99834 * 338.24146 * 3 2 1 6 6 N 1.31592 * 120.00350 * 350.39953 * 5 3 2 7 7 Si 1.86804 * 119.99976 * 170.39328 * 5 3 2 8 8 H 1.48501 * 109.46943 * 90.00183 * 7 5 3 9 9 H 1.48505 * 109.47255 * 210.00079 * 7 5 3 10 10 H 1.48503 * 109.47267 * 330.00175 * 7 5 3 11 11 C 1.38956 * 120.00224 * 180.02562 * 2 1 3 12 12 C 1.39221 * 119.64947 * 184.72817 * 11 2 1 13 13 C 1.38272 * 119.14788 * 179.72599 * 12 11 2 14 14 C 1.39299 * 118.45783 * 0.53737 * 13 12 11 15 15 O 1.35968 * 120.38280 * 179.74917 * 14 13 12 16 16 C 1.42900 * 116.99895 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47135 * 179.97438 * 16 15 14 18 18 C 1.53114 * 109.52414 * 294.68236 * 17 16 15 19 19 C 1.53035 * 109.27832 * 182.43973 * 18 17 16 20 20 N 1.46840 * 109.52609 * 59.17785 * 19 18 17 21 21 C 1.46841 * 111.19905 * 298.26044 * 20 19 18 22 22 C 1.53042 * 109.52520 * 61.73794 * 21 20 19 23 23 C 1.38624 * 119.23254 * 359.72405 * 14 13 12 24 24 N 1.31884 * 120.78253 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47082 * 85.88699 * 1 2 3 26 26 H 1.09001 * 109.46974 * 205.88455 * 1 2 3 27 27 H 1.08997 * 109.47467 * 325.88667 * 1 2 3 28 28 H 0.97000 * 120.00189 * 180.02562 * 6 5 3 29 29 H 1.07996 * 120.42982 * 359.97438 * 12 11 2 30 30 H 1.07994 * 120.76774 * 180.23186 * 13 12 11 31 31 H 1.08999 * 109.46905 * 299.99740 * 16 15 14 32 32 H 1.08999 * 109.47360 * 59.99746 * 16 15 14 33 33 H 1.09000 * 109.51879 * 54.87165 * 17 16 15 34 34 H 1.08997 * 109.50366 * 302.38131 * 18 17 16 35 35 H 1.08998 * 109.50375 * 62.49457 * 18 17 16 36 36 H 1.09004 * 109.46181 * 299.16054 * 19 18 17 37 37 H 1.09006 * 109.45976 * 179.19676 * 19 18 17 38 38 H 1.00902 * 111.00153 * 62.35487 * 20 19 18 39 39 H 1.08998 * 109.46202 * 301.72427 * 21 20 19 40 40 H 1.09005 * 109.45677 * 181.74883 * 21 20 19 41 41 H 1.08997 * 109.50186 * 180.88108 * 22 21 20 42 42 H 1.09000 * 109.49901 * 60.76371 * 22 21 20 43 43 H 1.08002 * 119.61101 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1494 1.1855 0.0000 4 1 3.1731 1.2180 0.3426 5 6 1.5296 2.3446 -0.4455 6 7 0.3584 2.2771 -1.0416 7 14 2.3580 4.0007 -0.1990 8 1 3.2158 4.3046 -1.3725 9 1 1.3227 5.0557 -0.0561 10 1 3.1941 3.9583 1.0275 11 6 2.1598 -1.2034 -0.0005 12 6 3.5484 -1.1969 0.0992 13 6 4.2289 -2.4006 0.1034 14 6 3.4940 -3.5790 -0.0044 15 8 4.1236 -4.7841 -0.0094 16 6 3.2995 -5.9461 -0.1227 17 6 4.1790 -7.1980 -0.1115 18 6 5.0626 -7.2138 -1.3619 19 6 5.8954 -8.4976 -1.3758 20 7 5.0015 -9.6626 -1.3716 21 6 4.1764 -9.6944 -0.1574 22 6 3.2922 -8.4462 -0.1070 23 6 2.1132 -3.5088 -0.1059 24 7 1.4945 -2.3441 -0.1018 25 1 -0.3633 0.0737 -1.0250 26 1 -0.3633 -0.9246 0.4486 27 1 -0.3634 0.8508 0.5763 28 1 -0.0746 3.0872 -1.3533 29 1 4.0869 -0.2640 0.1764 30 1 5.3056 -2.4262 0.1834 31 1 2.6049 -5.9821 0.7165 32 1 2.7391 -5.9045 -1.0567 33 1 4.8069 -7.1941 0.7794 34 1 4.4344 -7.1779 -2.2519 35 1 5.7265 -6.3494 -1.3493 36 1 6.5335 -8.5263 -0.4925 37 1 6.5153 -8.5187 -2.2722 38 1 4.4261 -9.6799 -2.2003 39 1 4.8224 -9.7174 0.7202 40 1 3.5475 -10.5846 -0.1689 41 1 2.6913 -8.4624 0.8022 42 1 2.6362 -8.4297 -0.9773 43 1 1.5374 -4.4186 -0.1902 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166802286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:20 Heat of formation + Delta-G solvation = -9.288256 kcal Electronic energy + Delta-G solvation = -22802.114778 eV Core-core repulsion = 19460.848800 eV Total energy + Delta-G solvation = -3341.265979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.31668 -40.09620 -38.91282 -37.21199 -34.02888 -33.53895 -32.90482 -31.75009 -29.96345 -28.46850 -27.59765 -25.72170 -24.28983 -23.80846 -22.73696 -22.55526 -21.12664 -19.39498 -18.98186 -17.88938 -17.42235 -17.11386 -16.42148 -16.40079 -15.58873 -15.56158 -15.40084 -15.38350 -15.16351 -14.94131 -14.26957 -13.97015 -13.88622 -13.77354 -13.32385 -13.16733 -13.05104 -13.00978 -12.93755 -12.61451 -12.36168 -12.16326 -12.08447 -12.06333 -11.98746 -11.49941 -11.25479 -11.15800 -10.50188 -10.19190 -10.05699 -9.29940 -8.47172 -8.18675 -5.76787 0.53058 0.75688 1.43315 1.47450 1.56310 2.23493 2.40891 2.88198 3.01120 3.32142 3.42831 3.67120 3.77396 3.91188 3.92376 4.05889 4.20574 4.29573 4.35070 4.42711 4.48743 4.52070 4.63772 4.64991 4.76386 4.83178 4.91329 4.95222 5.00773 5.01965 5.08756 5.13322 5.21307 5.22513 5.27180 5.36058 5.38953 5.43281 5.73566 6.03259 6.11148 6.51120 6.57476 6.67528 7.15914 7.37389 7.87634 8.72244 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.042170 B = 0.002726 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.825678 B =10270.738978 C =10673.816076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.155 3.845 2 N -0.459 5.459 3 C -0.328 4.328 4 H 0.103 0.897 5 C -0.019 4.019 6 N -0.909 5.909 7 Si 1.000 3.000 8 H -0.273 1.273 9 H -0.280 1.280 10 H -0.260 1.260 11 C 0.330 3.670 12 C -0.230 4.230 13 C -0.054 4.054 14 C -0.038 4.038 15 O -0.322 6.322 16 C 0.061 3.939 17 C -0.078 4.078 18 C -0.147 4.147 19 C 0.061 3.939 20 N -0.693 5.693 21 C 0.060 3.940 22 C -0.145 4.145 23 C 0.075 3.925 24 N -0.564 5.564 25 H 0.029 0.971 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.269 0.731 29 H 0.132 0.868 30 H 0.150 0.850 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.346 0.654 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.419 -19.020 1.174 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.154 5.154 3 C -0.456 4.456 4 H 0.120 0.880 5 C -0.220 4.220 6 N -0.546 5.546 7 Si 0.822 3.178 8 H -0.198 1.198 9 H -0.205 1.205 10 H -0.184 1.184 11 C 0.091 3.909 12 C -0.257 4.257 13 C -0.080 4.080 14 C -0.089 4.089 15 O -0.236 6.236 16 C -0.014 4.014 17 C -0.097 4.097 18 C -0.186 4.186 19 C -0.069 4.069 20 N -0.322 5.322 21 C -0.069 4.069 22 C -0.185 4.185 23 C -0.086 4.086 24 N -0.286 5.286 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.150 0.850 30 H 0.168 0.832 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.164 0.836 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.913 -19.073 1.293 20.328 hybrid contribution -0.148 1.876 -0.240 1.897 sum 6.765 -17.197 1.053 18.509 Atomic orbital electron populations 1.20978 0.80111 0.98028 0.99747 1.42523 1.04958 1.01516 1.66429 1.19925 0.99513 0.84461 1.41683 0.87951 1.26291 0.97198 1.03420 0.95084 1.70256 1.16928 1.30063 1.37397 0.84826 0.77695 0.76179 0.79051 1.19848 1.20523 1.18362 1.18792 0.89355 0.86309 0.96429 1.21190 0.92917 0.98829 1.12736 1.20685 1.00460 0.88857 0.97952 1.19364 0.92035 0.86228 1.11271 1.85924 1.35791 1.11663 1.90257 1.22912 0.93814 0.83688 1.01008 1.21138 0.96930 0.92116 0.99506 1.22227 0.99262 0.99949 0.97166 1.21992 0.95122 0.86878 1.02883 1.60676 1.24390 1.41622 1.05518 1.22030 0.94982 0.96578 0.93354 1.22226 0.98421 0.94334 1.03481 1.22662 0.91202 0.95350 0.99343 1.67019 1.40796 0.97698 1.23068 0.95250 0.93801 0.93471 0.92101 0.84989 0.83198 0.92073 0.92583 0.90626 0.92153 0.92006 0.91137 0.90067 0.83617 0.91027 0.89204 0.90254 0.91272 0.81844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 8.04 8.70 127.77 1.11 9.15 16 2 N -0.46 -24.56 3.13 -541.24 -1.69 -26.25 16 3 C -0.33 -17.45 9.14 84.03 0.77 -16.68 16 4 H 0.10 5.14 5.95 -2.91 -0.02 5.12 16 5 C -0.02 -1.00 5.16 84.86 0.44 -0.56 16 6 N -0.91 -49.82 10.46 21.64 0.23 -49.59 16 7 Si 1.00 40.78 29.56 68.60 2.03 42.81 16 8 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 9 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 10 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 11 C 0.33 16.27 7.34 133.09 0.98 17.24 16 12 C -0.23 -10.03 9.31 22.51 0.21 -9.82 16 13 C -0.05 -2.00 10.12 22.53 0.23 -1.77 16 14 C -0.04 -1.38 6.71 22.62 0.15 -1.23 16 15 O -0.32 -9.82 9.75 -93.19 -0.91 -10.73 16 16 C 0.06 1.40 4.13 71.98 0.30 1.70 16 17 C -0.08 -1.40 2.49 -10.72 -0.03 -1.43 16 18 C -0.15 -2.59 5.23 30.64 0.16 -2.43 16 19 C 0.06 0.91 6.55 86.33 0.57 1.47 16 20 N -0.69 -9.57 6.87 -514.02 -3.53 -13.10 16 21 C 0.06 0.74 6.55 86.33 0.57 1.30 16 22 C -0.15 -1.93 5.36 30.65 0.16 -1.76 16 23 C 0.07 2.84 10.21 84.78 0.87 3.71 16 24 N -0.56 -26.07 9.08 -192.78 -1.75 -27.82 16 25 H 0.03 1.61 7.45 -2.39 -0.02 1.59 16 26 H 0.04 2.11 7.32 -2.39 -0.02 2.10 16 27 H 0.05 2.49 7.09 -2.39 -0.02 2.47 16 28 H 0.27 13.92 8.31 -92.71 -0.77 13.14 16 29 H 0.13 5.64 6.07 -2.91 -0.02 5.62 16 30 H 0.15 4.64 8.06 -2.91 -0.02 4.62 16 31 H 0.06 1.33 7.68 -2.39 -0.02 1.32 16 32 H 0.06 1.27 7.67 -2.39 -0.02 1.25 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.30 7.91 -2.39 -0.02 1.28 16 36 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.35 4.13 8.86 -89.69 -0.79 3.34 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.16 5.10 6.30 -2.91 -0.02 5.08 16 Total: -1.00 -61.81 340.99 1.07 -60.74 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.22 Total: 25.05 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 6.48 Total: -1.11 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -6.75 Total: -116.76 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.91 Total: -10.73 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -61.81 1.07 -60.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.454 kcal (2) G-P(sol) polarization free energy of solvation -61.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds