Wall clock time and date at job start Tue Mar 31 2020 07:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46891 * 2 1 4 4 O 1.42902 * 109.46986 * 119.99160 * 2 1 3 5 5 C 1.35516 * 116.99906 * 150.00019 * 4 2 1 6 6 C 1.39432 * 120.46586 * 180.02562 * 5 4 2 7 7 C 1.38205 * 118.50776 * 179.97438 * 6 5 4 8 8 N 1.32465 * 119.26469 * 359.97438 * 7 6 5 9 9 C 1.32467 * 120.89049 * 0.02562 * 8 7 6 10 10 N 1.38397 * 119.18742 * 180.02562 * 9 8 7 11 11 C 1.46501 * 119.99940 * 359.97438 * 10 9 8 12 12 H 1.08996 * 109.41051 * 35.00132 * 11 10 9 13 13 C 1.52960 * 109.41127 * 154.85576 * 11 10 9 14 14 C 1.53234 * 109.40547 * 183.70526 * 13 11 10 15 15 C 1.51268 * 108.53506 * 305.37702 * 14 13 11 16 16 C 1.37879 * 120.84852 * 231.32507 * 15 14 13 17 17 N 1.31512 * 119.99894 * 359.97438 * 16 15 14 18 18 Si 1.86798 * 119.99936 * 180.02562 * 16 15 14 19 19 H 1.48497 * 109.47241 * 59.99768 * 18 16 15 20 20 H 1.48502 * 109.47008 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47028 * 299.99562 * 18 16 15 22 22 C 1.51270 * 118.30274 * 51.34472 * 15 14 13 23 23 C 1.52959 * 109.41489 * 275.14001 * 11 10 9 24 24 N 1.32482 * 121.62383 * 359.97438 * 9 8 7 25 25 H 1.08994 * 109.47414 * 299.99902 * 1 2 3 26 26 H 1.09000 * 109.47422 * 60.00687 * 1 2 3 27 27 H 1.09004 * 109.46997 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47788 * 239.99714 * 2 1 3 29 29 H 1.08994 * 109.47011 * 59.99851 * 3 2 1 30 30 H 1.08998 * 109.47111 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47052 * 299.99862 * 3 2 1 32 32 H 1.08001 * 120.74981 * 359.97438 * 6 5 4 33 33 H 1.07995 * 120.36650 * 179.97438 * 7 6 5 34 34 H 0.97000 * 119.99533 * 179.97438 * 10 9 8 35 35 H 1.09004 * 109.48485 * 303.68859 * 13 11 10 36 36 H 1.09004 * 109.47896 * 63.72777 * 13 11 10 37 37 H 1.08998 * 109.62204 * 65.08619 * 14 13 11 38 38 H 1.08996 * 109.62577 * 185.66041 * 14 13 11 39 39 H 0.97003 * 120.00068 * 179.97438 * 17 16 15 40 40 H 1.08999 * 109.62755 * 68.36910 * 22 15 14 41 41 H 1.08997 * 109.62632 * 188.74677 * 22 15 14 42 42 H 1.09002 * 109.48182 * 296.27810 * 23 11 10 43 43 H 1.09003 * 109.47748 * 56.31700 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.1973 -1.3121 1.0656 6 6 3.7297 -1.9928 2.1598 7 6 4.9468 -2.6305 2.0113 8 7 5.5674 -2.5773 0.8422 9 6 5.0371 -1.9227 -0.1801 10 7 5.7156 -1.8903 -1.3859 11 6 7.0043 -2.5742 -1.5198 12 1 6.9954 -3.4843 -0.9201 13 6 7.2381 -2.9350 -2.9878 14 6 8.5411 -3.7312 -3.1150 15 6 9.6582 -2.9294 -2.4845 16 6 10.8288 -2.6863 -3.1713 17 7 10.9851 -3.1540 -4.3904 18 14 12.1931 -1.6939 -2.3695 19 1 12.6401 -2.3781 -1.1297 20 1 13.3371 -1.5758 -3.3090 21 1 11.6871 -0.3390 -2.0323 22 6 9.4583 -2.4016 -1.0810 23 6 8.1223 -1.6528 -1.0292 24 7 3.8727 -1.2992 -0.0769 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6766 1.9563 0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 3.2030 -2.0212 3.1022 33 1 5.3871 -3.1662 2.8392 34 1 5.3379 -1.4148 -2.1422 35 1 6.4063 -3.5386 -3.3508 36 1 7.3106 -2.0222 -3.5793 37 1 8.4388 -4.6856 -2.5984 38 1 8.7635 -3.9037 -4.1680 39 1 11.8085 -2.9827 -4.8738 40 1 9.4410 -3.2328 -0.3762 41 1 10.2718 -1.7224 -0.8260 42 1 8.1734 -0.7711 -1.6681 43 1 7.9174 -1.3472 -0.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167841034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:31 Heat of formation + Delta-G solvation = -3.159307 kcal Electronic energy + Delta-G solvation = -23329.165933 eV Core-core repulsion = 19988.165725 eV Total energy + Delta-G solvation = -3341.000207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98598 -38.95282 -37.39068 -34.47936 -33.61278 -32.72279 -31.64362 -30.02845 -29.49670 -27.50956 -26.99220 -24.42713 -23.31607 -21.79385 -21.58283 -21.22512 -19.44913 -18.59372 -17.71849 -16.26234 -15.97382 -15.73470 -15.25411 -15.03830 -14.63091 -14.45627 -14.26172 -13.84221 -13.53530 -13.22189 -12.82732 -12.68760 -12.56383 -12.37916 -12.21420 -12.08095 -11.63960 -11.33101 -11.17664 -11.04430 -10.85726 -10.69949 -10.58651 -10.39989 -10.15638 -10.00446 -9.74200 -9.33367 -9.00743 -8.96697 -8.68371 -8.48012 -7.70092 -6.11223 -4.01870 1.38558 1.48408 2.80502 3.23584 3.30243 3.35993 3.37878 4.11139 4.33830 4.38616 4.63807 4.75294 4.93690 4.96601 5.10253 5.18443 5.30224 5.42818 5.47233 5.51656 5.58392 5.67718 5.73663 5.86460 5.89400 5.97958 6.19719 6.22743 6.48288 6.61062 6.72364 6.86078 6.89371 6.98339 7.02972 7.08005 7.26791 7.41391 7.47568 7.64845 7.71043 7.74220 7.87455 8.36938 8.62106 8.95200 9.53910 10.98484 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.003428 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.506190 B = 8165.640044 C = 8395.658246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.168 4.168 4 O -0.299 6.299 5 C 0.402 3.598 6 C -0.323 4.323 7 C 0.217 3.783 8 N -0.580 5.580 9 C 0.603 3.397 10 N -0.686 5.686 11 C 0.169 3.831 12 H 0.084 0.916 13 C -0.116 4.116 14 C 0.015 3.985 15 C -0.490 4.490 16 C 0.077 3.923 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.274 1.274 20 H -0.293 1.293 21 H -0.275 1.275 22 C -0.007 4.007 23 C -0.111 4.111 24 N -0.633 5.633 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.170 0.830 34 H 0.406 0.594 35 H 0.035 0.965 36 H 0.054 0.946 37 H 0.007 0.993 38 H 0.061 0.939 39 H 0.265 0.735 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.048 0.952 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.380 5.163 9.441 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.023 3.977 3 C -0.225 4.225 4 O -0.204 6.204 5 C 0.213 3.787 6 C -0.350 4.350 7 C 0.050 3.950 8 N -0.306 5.306 9 C 0.246 3.754 10 N -0.318 5.318 11 C 0.066 3.934 12 H 0.102 0.898 13 C -0.154 4.154 14 C -0.023 4.023 15 C -0.509 4.509 16 C -0.126 4.126 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.199 1.199 20 H -0.219 1.219 21 H -0.200 1.200 22 C -0.045 4.045 23 C -0.151 4.151 24 N -0.373 5.373 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.160 0.840 33 H 0.187 0.813 34 H 0.242 0.758 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.043 0.957 42 H 0.067 0.933 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.796 5.127 8.574 19.542 hybrid contribution 0.147 0.971 0.670 1.189 sum -16.649 6.098 9.244 19.996 Atomic orbital electron populations 1.21902 0.92897 1.02960 1.02914 1.22371 0.94339 0.92860 0.88140 1.22203 1.02355 0.95496 1.02449 1.86287 1.31543 1.63912 1.38692 1.19670 0.84356 0.85904 0.88727 1.21458 1.01747 1.11416 1.00375 1.22757 0.88712 0.89839 0.93671 1.68095 1.36735 1.25251 1.00536 1.19037 0.83842 0.84993 0.87495 1.44950 1.22146 1.56360 1.08355 1.21101 0.78986 0.95054 0.98284 0.89776 1.21971 0.99813 1.00648 0.92996 1.19325 0.89845 0.93535 0.99581 1.20051 1.00240 1.32834 0.97802 1.24832 0.97722 0.95481 0.94569 1.69819 1.26725 1.45300 1.10978 0.86653 0.81342 0.80970 0.79085 1.19949 1.21907 1.20050 1.19580 0.92276 0.95346 0.97291 1.21913 0.96655 0.98345 0.98155 1.67357 1.11747 1.31099 1.27109 0.91698 0.90487 0.91846 0.89084 0.92104 0.91868 0.91085 0.84041 0.81322 0.75756 0.94592 0.92742 0.97464 0.92069 0.92519 0.96002 0.95748 0.93298 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.56 37.16 0.36 -0.82 16 2 C 0.08 0.84 3.12 -26.73 -0.08 0.76 16 3 C -0.17 -1.64 9.53 37.16 0.35 -1.29 16 4 O -0.30 -3.84 9.78 -18.24 -0.18 -4.02 16 5 C 0.40 5.76 7.49 -16.72 -0.13 5.64 16 6 C -0.32 -4.08 10.12 -39.15 -0.40 -4.47 16 7 C 0.22 2.85 11.29 -17.29 -0.20 2.65 16 8 N -0.58 -9.68 9.19 -14.00 -0.13 -9.81 16 9 C 0.60 10.26 8.40 -322.87 -2.71 7.55 16 10 N -0.69 -11.67 5.22 -55.85 -0.29 -11.96 16 11 C 0.17 3.26 2.34 -67.97 -0.16 3.10 16 12 H 0.08 1.74 7.50 -51.93 -0.39 1.35 16 13 C -0.12 -2.36 5.40 -26.63 -0.14 -2.50 16 14 C 0.02 0.37 5.97 -27.48 -0.16 0.20 16 15 C -0.49 -12.74 5.51 -98.92 -0.55 -13.28 16 16 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 17 N -0.89 -25.35 12.73 55.43 0.71 -24.64 16 18 Si 0.89 21.27 26.80 -169.99 -4.56 16.72 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.01 -0.16 5.60 -27.48 -0.15 -0.31 16 23 C -0.11 -2.32 5.51 -26.63 -0.15 -2.47 16 24 N -0.63 -9.93 8.83 -13.99 -0.12 -10.05 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 1.08 7.01 -51.93 -0.36 0.72 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.41 6.30 8.72 -40.82 -0.36 5.95 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.06 1.62 7.07 -51.93 -0.37 1.26 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.56 5.17 -51.93 -0.27 0.30 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -29.05 346.78 -10.36 -39.41 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.80 Total: 2.40 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -4.21 Total: -3.26 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.16 Total: -56.47 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.18 Total: -4.02 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.56 Total: 16.72 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.05 -10.36 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.250 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds