Wall clock time and date at job start Tue Mar 31 2020 07:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46891 * 2 1 4 4 O 1.42902 * 109.46986 * 119.99160 * 2 1 3 5 5 C 1.35516 * 116.99906 * 150.00019 * 4 2 1 6 6 C 1.39432 * 120.46586 * 180.02562 * 5 4 2 7 7 C 1.38205 * 118.50776 * 179.97438 * 6 5 4 8 8 N 1.32465 * 119.26469 * 359.97438 * 7 6 5 9 9 C 1.32467 * 120.89049 * 0.02562 * 8 7 6 10 10 N 1.38397 * 119.18742 * 180.02562 * 9 8 7 11 11 C 1.46501 * 119.99940 * 359.97438 * 10 9 8 12 12 H 1.08996 * 109.41051 * 35.00132 * 11 10 9 13 13 C 1.52960 * 109.41127 * 154.85576 * 11 10 9 14 14 C 1.53234 * 109.40547 * 183.70526 * 13 11 10 15 15 C 1.51268 * 108.53506 * 305.37702 * 14 13 11 16 16 C 1.37879 * 120.84852 * 231.32507 * 15 14 13 17 17 N 1.31512 * 119.99894 * 359.97438 * 16 15 14 18 18 Si 1.86798 * 119.99936 * 180.02562 * 16 15 14 19 19 H 1.48497 * 109.47241 * 59.99768 * 18 16 15 20 20 H 1.48502 * 109.47008 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47028 * 299.99562 * 18 16 15 22 22 C 1.51270 * 118.30274 * 51.34472 * 15 14 13 23 23 C 1.52959 * 109.41489 * 275.14001 * 11 10 9 24 24 N 1.32482 * 121.62383 * 359.97438 * 9 8 7 25 25 H 1.08994 * 109.47414 * 299.99902 * 1 2 3 26 26 H 1.09000 * 109.47422 * 60.00687 * 1 2 3 27 27 H 1.09004 * 109.46997 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47788 * 239.99714 * 2 1 3 29 29 H 1.08994 * 109.47011 * 59.99851 * 3 2 1 30 30 H 1.08998 * 109.47111 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47052 * 299.99862 * 3 2 1 32 32 H 1.08001 * 120.74981 * 359.97438 * 6 5 4 33 33 H 1.07995 * 120.36650 * 179.97438 * 7 6 5 34 34 H 0.97000 * 119.99533 * 179.97438 * 10 9 8 35 35 H 1.09004 * 109.48485 * 303.68859 * 13 11 10 36 36 H 1.09004 * 109.47896 * 63.72777 * 13 11 10 37 37 H 1.08998 * 109.62204 * 65.08619 * 14 13 11 38 38 H 1.08996 * 109.62577 * 185.66041 * 14 13 11 39 39 H 0.97003 * 120.00068 * 179.97438 * 17 16 15 40 40 H 1.08999 * 109.62755 * 68.36910 * 22 15 14 41 41 H 1.08997 * 109.62632 * 188.74677 * 22 15 14 42 42 H 1.09002 * 109.48182 * 296.27810 * 23 11 10 43 43 H 1.09003 * 109.47748 * 56.31700 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.1973 -1.3121 1.0656 6 6 3.7297 -1.9928 2.1598 7 6 4.9468 -2.6305 2.0113 8 7 5.5674 -2.5773 0.8422 9 6 5.0371 -1.9227 -0.1801 10 7 5.7156 -1.8903 -1.3859 11 6 7.0043 -2.5742 -1.5198 12 1 6.9954 -3.4843 -0.9201 13 6 7.2381 -2.9350 -2.9878 14 6 8.5411 -3.7312 -3.1150 15 6 9.6582 -2.9294 -2.4845 16 6 10.8288 -2.6863 -3.1713 17 7 10.9851 -3.1540 -4.3904 18 14 12.1931 -1.6939 -2.3695 19 1 12.6401 -2.3781 -1.1297 20 1 13.3371 -1.5758 -3.3090 21 1 11.6871 -0.3390 -2.0323 22 6 9.4583 -2.4016 -1.0810 23 6 8.1223 -1.6528 -1.0292 24 7 3.8727 -1.2992 -0.0769 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6766 1.9563 0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 3.2030 -2.0212 3.1022 33 1 5.3871 -3.1662 2.8392 34 1 5.3379 -1.4148 -2.1422 35 1 6.4063 -3.5386 -3.3508 36 1 7.3106 -2.0222 -3.5793 37 1 8.4388 -4.6856 -2.5984 38 1 8.7635 -3.9037 -4.1680 39 1 11.8085 -2.9827 -4.8738 40 1 9.4410 -3.2328 -0.3762 41 1 10.2718 -1.7224 -0.8260 42 1 8.1734 -0.7711 -1.6681 43 1 7.9174 -1.3472 -0.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167841034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:30 Heat of formation + Delta-G solvation = -19.230238 kcal Electronic energy + Delta-G solvation = -23329.862820 eV Core-core repulsion = 19988.165725 eV Total energy + Delta-G solvation = -3341.697095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.08759 -40.02110 -38.93614 -35.99195 -34.55566 -34.08682 -33.17472 -31.60002 -30.98792 -28.71078 -28.19595 -25.46979 -24.74355 -23.30664 -23.20749 -22.38179 -21.11170 -19.68588 -18.91058 -17.95052 -17.18574 -16.87844 -16.41431 -16.35739 -16.20348 -15.66969 -15.46302 -15.00168 -14.77879 -14.56257 -14.42632 -14.15513 -13.94306 -13.50767 -13.34615 -13.24585 -13.04239 -12.77834 -12.69402 -12.51640 -12.14750 -12.06036 -11.98123 -11.83972 -11.73454 -11.52721 -11.41364 -10.89848 -10.64655 -10.54212 -10.37780 -10.15187 -8.95899 -8.16717 -6.10172 0.31151 0.36440 1.40048 1.41358 1.48998 1.76271 2.08927 2.41330 2.97771 3.11706 3.29251 3.77341 3.90500 3.99981 4.05667 4.07984 4.22324 4.26054 4.49264 4.52955 4.57573 4.67608 4.72126 4.79808 4.82927 4.87949 4.93608 4.98581 5.08987 5.12260 5.17788 5.23230 5.23843 5.24828 5.44150 5.58548 5.63714 5.76355 5.82278 5.89005 6.09917 6.26825 6.35735 6.58615 6.95494 7.43865 7.47917 8.94162 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.003428 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.506190 B = 8165.640044 C = 8395.658246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 C -0.162 4.162 4 O -0.302 6.302 5 C 0.386 3.614 6 C -0.310 4.310 7 C 0.212 3.788 8 N -0.607 5.607 9 C 0.588 3.412 10 N -0.688 5.688 11 C 0.188 3.812 12 H 0.074 0.926 13 C -0.103 4.103 14 C 0.012 3.988 15 C -0.500 4.500 16 C 0.025 3.975 17 N -0.930 5.930 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.294 1.294 21 H -0.268 1.268 22 C -0.008 4.008 23 C -0.102 4.102 24 N -0.639 5.639 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.172 0.828 33 H 0.206 0.794 34 H 0.412 0.588 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.003 0.997 38 H 0.032 0.968 39 H 0.263 0.737 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.042 0.958 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.101 6.071 11.505 23.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 C -0.220 4.220 4 O -0.207 6.207 5 C 0.198 3.802 6 C -0.337 4.337 7 C 0.048 3.952 8 N -0.335 5.335 9 C 0.231 3.769 10 N -0.322 5.322 11 C 0.084 3.916 12 H 0.092 0.908 13 C -0.142 4.142 14 C -0.026 4.026 15 C -0.519 4.519 16 C -0.173 4.173 17 N -0.569 5.569 18 Si 0.767 3.233 19 H -0.192 1.192 20 H -0.220 1.220 21 H -0.193 1.193 22 C -0.046 4.046 23 C -0.141 4.141 24 N -0.379 5.379 25 H 0.091 0.909 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.189 0.811 33 H 0.223 0.777 34 H 0.249 0.751 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.022 0.978 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.060 0.940 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.566 6.047 10.689 22.260 hybrid contribution 0.541 0.662 0.112 0.862 sum -18.025 6.709 10.801 22.058 Atomic orbital electron populations 1.21901 0.90545 1.03313 1.04268 1.22601 0.96108 0.92825 0.86874 1.22169 1.00702 0.95291 1.03805 1.86297 1.30826 1.63886 1.39647 1.20057 0.84832 0.86422 0.88910 1.21845 1.01351 1.09541 1.00937 1.23410 0.88789 0.89590 0.93448 1.68102 1.37885 1.25885 1.01599 1.19099 0.84420 0.85848 0.87527 1.44571 1.21523 1.57032 1.09093 1.20625 0.79772 0.94447 0.96764 0.90822 1.21738 0.98288 1.00047 0.94124 1.19269 0.91780 0.93966 0.97571 1.20632 1.00318 1.31956 0.98982 1.25546 0.99902 0.96818 0.95072 1.69947 1.27290 1.47296 1.12406 0.85844 0.79014 0.80032 0.78399 1.19185 1.22043 1.19332 1.19584 0.93769 0.95620 0.95616 1.21768 0.95817 0.97947 0.98562 1.67313 1.11437 1.31062 1.28102 0.90907 0.88552 0.92004 0.90670 0.91245 0.94297 0.89250 0.81081 0.77701 0.75104 0.92733 0.93192 0.97843 0.94975 0.92769 0.95760 0.95735 0.93952 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.56 71.98 0.69 -1.23 16 2 C 0.07 1.42 3.12 30.60 0.10 1.51 16 3 C -0.16 -2.92 9.53 71.98 0.69 -2.23 16 4 O -0.30 -7.19 9.78 -88.19 -0.86 -8.05 16 5 C 0.39 10.38 7.49 84.84 0.64 11.02 16 6 C -0.31 -6.97 10.12 22.55 0.23 -6.74 16 7 C 0.21 5.00 11.29 84.59 0.95 5.95 16 8 N -0.61 -19.27 9.19 -198.21 -1.82 -21.10 16 9 C 0.59 19.36 8.40 261.51 2.20 21.56 16 10 N -0.69 -22.86 5.22 -330.60 -1.72 -24.58 16 11 C 0.19 7.13 2.34 44.96 0.11 7.24 16 12 H 0.07 2.98 7.50 -2.39 -0.02 2.96 16 13 C -0.10 -4.20 5.40 30.66 0.17 -4.03 16 14 C 0.01 0.60 5.97 30.11 0.18 0.78 16 15 C -0.50 -26.12 5.51 -16.17 -0.09 -26.21 16 16 C 0.03 1.37 5.46 84.66 0.46 1.84 16 17 N -0.93 -54.27 12.73 21.45 0.27 -54.00 16 18 Si 0.94 43.69 26.80 68.60 1.84 45.53 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C -0.01 -0.35 5.60 30.11 0.17 -0.19 16 23 C -0.10 -4.13 5.51 30.66 0.17 -3.96 16 24 N -0.64 -19.39 8.83 -310.87 -2.74 -22.13 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 1.73 7.01 -2.39 -0.02 1.71 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.21 3.10 8.06 -2.91 -0.02 3.08 16 34 H 0.41 12.51 8.72 -92.71 -0.81 11.70 16 35 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.03 1.75 7.07 -2.39 -0.02 1.73 16 39 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.02 1.10 5.17 -2.39 -0.01 1.09 16 42 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -62.91 346.78 1.80 -61.11 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.20 Total: 17.92 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 6.65 Total: 5.30 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -6.02 Total: -121.81 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.86 Total: -8.05 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.84 Total: 45.53 kcal Total: -62.91 1.80 -61.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.875 kcal (2) G-P(sol) polarization free energy of solvation -62.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds