Wall clock time and date at job start Tue Mar 31 2020 07:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35515 * 116.99801 * 179.97438 * 3 2 1 5 5 C 1.39434 * 120.46256 * 179.97438 * 4 3 2 6 6 C 1.38200 * 118.50732 * 180.02562 * 5 4 3 7 7 C 1.50697 * 120.37055 * 179.97438 * 6 5 4 8 8 N 1.32468 * 119.26708 * 0.02562 * 6 5 4 9 9 C 1.32458 * 120.88646 * 359.97438 * 8 6 5 10 10 N 1.38399 * 119.18891 * 180.02562 * 9 8 6 11 11 C 1.46500 * 120.00289 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.41482 * 34.99450 * 11 10 9 13 13 C 1.52950 * 109.41522 * 154.85703 * 11 10 9 14 14 C 1.53231 * 109.40593 * 183.70099 * 13 11 10 15 15 C 1.51268 * 108.53668 * 305.37540 * 14 13 11 16 16 C 1.37879 * 120.84975 * 231.32159 * 15 14 13 17 17 N 1.31522 * 119.99919 * 0.02562 * 16 15 14 18 18 Si 1.86803 * 120.00077 * 180.02562 * 16 15 14 19 19 H 1.48496 * 109.47067 * 90.00015 * 18 16 15 20 20 H 1.48505 * 109.47055 * 210.00224 * 18 16 15 21 21 H 1.48502 * 109.46974 * 330.00182 * 18 16 15 22 22 C 1.51266 * 118.30099 * 51.34687 * 15 14 13 23 23 C 1.52962 * 109.41265 * 275.14225 * 11 10 9 24 24 N 1.32489 * 121.62590 * 359.72798 * 9 8 6 25 25 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 26 26 H 1.08999 * 109.47084 * 60.00043 * 1 2 3 27 27 H 1.08999 * 109.47659 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 29 29 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 30 30 H 1.08003 * 120.75246 * 359.97438 * 5 4 3 31 31 H 1.09007 * 109.46822 * 89.99558 * 7 6 5 32 32 H 1.08989 * 109.47695 * 210.00021 * 7 6 5 33 33 H 1.09003 * 109.46904 * 330.00687 * 7 6 5 34 34 H 0.96998 * 119.99783 * 0.02562 * 10 9 8 35 35 H 1.08998 * 109.48893 * 303.68462 * 13 11 10 36 36 H 1.09003 * 109.47859 * 63.71248 * 13 11 10 37 37 H 1.08998 * 109.62293 * 65.08704 * 14 13 11 38 38 H 1.09000 * 109.62590 * 185.65983 * 14 13 11 39 39 H 0.96998 * 119.99645 * 180.02562 * 17 16 15 40 40 H 1.09000 * 109.62612 * 68.36581 * 22 15 14 41 41 H 1.09003 * 109.62687 * 188.74527 * 22 15 14 42 42 H 1.09001 * 109.47834 * 296.27471 * 23 11 10 43 43 H 1.09006 * 109.47987 * 56.31162 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3498 1.5248 0.0005 5 6 3.8931 2.8089 0.0000 6 6 5.2686 2.9431 0.0001 7 6 5.9006 4.3111 -0.0010 8 7 6.0253 1.8559 0.0001 9 6 5.4808 0.6484 0.0005 10 7 6.3048 -0.4636 0.0010 11 6 5.7215 -1.8075 0.0010 12 1 4.8049 -1.8047 -0.5890 13 6 6.7173 -2.7938 -0.6113 14 6 6.0727 -4.1814 -0.6962 15 6 5.5794 -4.5675 0.6807 16 6 5.9186 -5.7820 1.2384 17 7 6.6809 -6.6216 0.5722 18 14 5.2957 -6.2349 2.9403 19 1 3.9918 -6.9353 2.8199 20 1 6.2780 -7.1281 3.6055 21 1 5.1220 -5.0011 3.7483 22 6 4.7040 -3.5874 1.4298 23 6 5.3999 -2.2222 1.4378 24 7 4.1668 0.4789 0.0064 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2535 3.6792 -0.0012 31 1 6.0528 4.6419 1.0264 32 1 6.8609 4.2674 -0.5147 33 1 5.2451 5.0138 -0.5155 34 1 7.2684 -0.3531 0.0014 35 1 6.9924 -2.4591 -1.6115 36 1 7.6092 -2.8447 0.0132 37 1 5.2334 -4.1533 -1.3911 38 1 6.8104 -4.9075 -1.0378 39 1 6.9192 -7.4761 0.9644 40 1 3.7381 -3.5043 0.9317 41 1 4.5595 -3.9336 2.4533 42 1 6.3236 -2.2871 2.0128 43 1 4.7406 -1.4817 1.8909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167841289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:24 Heat of formation + Delta-G solvation = -5.445959 kcal Electronic energy + Delta-G solvation = -23675.611486 eV Core-core repulsion = 20334.512122 eV Total energy + Delta-G solvation = -3341.099364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.95836 -38.63507 -37.49494 -34.72770 -33.41760 -32.28535 -31.35167 -30.37005 -29.65914 -28.19656 -26.99204 -23.56895 -23.32492 -22.36184 -21.52817 -21.06052 -19.52874 -18.41904 -17.25978 -16.40593 -16.33166 -15.83732 -15.16886 -14.87673 -14.75244 -14.46403 -13.96568 -13.42073 -13.31749 -13.24385 -12.93844 -12.70061 -12.66292 -12.35363 -12.29569 -12.11694 -11.65442 -11.60187 -11.10837 -10.98591 -10.83291 -10.74424 -10.60135 -10.20550 -10.08127 -9.92817 -9.56275 -9.33688 -9.02513 -8.97082 -8.67132 -8.49466 -7.67354 -6.12799 -4.03758 1.37723 1.51282 2.93361 3.24336 3.27313 3.34164 3.34871 4.08970 4.24327 4.36083 4.82259 4.94879 5.01228 5.06719 5.15349 5.34685 5.40199 5.41390 5.46107 5.61583 5.67454 5.78178 5.81181 5.84413 5.88518 5.97782 6.20108 6.32274 6.47411 6.57113 6.71934 6.81526 6.87682 6.97274 7.08552 7.12159 7.28133 7.39275 7.50233 7.63759 7.69460 7.74839 7.90016 8.35229 8.64543 8.93623 9.51956 10.96682 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.004578 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.496348 B = 6114.296831 C = 7133.353498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.304 6.304 4 C 0.405 3.595 5 C -0.321 4.321 6 C 0.237 3.763 7 C -0.101 4.101 8 N -0.600 5.600 9 C 0.607 3.393 10 N -0.686 5.686 11 C 0.169 3.831 12 H 0.080 0.920 13 C -0.116 4.116 14 C 0.015 3.985 15 C -0.488 4.488 16 C 0.076 3.924 17 N -0.890 5.890 18 Si 0.886 3.114 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.265 1.265 22 C -0.017 4.017 23 C -0.110 4.110 24 N -0.616 5.616 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.141 0.859 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.409 0.591 35 H 0.036 0.964 36 H 0.055 0.945 37 H 0.006 0.994 38 H 0.061 0.939 39 H 0.264 0.736 40 H 0.018 0.982 41 H 0.034 0.966 42 H 0.049 0.951 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.930 17.115 -1.144 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.209 6.209 4 C 0.216 3.784 5 C -0.348 4.348 6 C 0.091 3.909 7 C -0.158 4.158 8 N -0.328 5.328 9 C 0.250 3.750 10 N -0.319 5.319 11 C 0.065 3.935 12 H 0.098 0.902 13 C -0.154 4.154 14 C -0.023 4.023 15 C -0.507 4.507 16 C -0.126 4.126 17 N -0.528 5.528 18 Si 0.715 3.285 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.190 1.190 22 C -0.055 4.055 23 C -0.150 4.150 24 N -0.356 5.356 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.159 0.841 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.246 0.754 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.024 0.976 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.609 16.080 -1.142 17.069 hybrid contribution -0.422 0.124 0.993 1.087 sum -6.031 16.204 -0.148 17.291 Atomic orbital electron populations 1.21814 0.93027 1.03060 1.02932 1.22689 0.94588 0.80575 1.03393 1.86195 1.16651 1.31267 1.86781 1.19694 0.83804 0.89292 0.85626 1.21204 0.96069 0.96188 1.21361 1.21069 0.88995 0.94320 0.86514 1.20716 1.01544 0.90133 1.03436 1.67799 1.40392 0.97436 1.27185 1.18953 0.84268 0.86103 0.85684 1.44916 1.07686 1.02967 1.76301 1.21075 0.97148 0.77443 0.97791 0.90212 1.21963 0.98050 0.97906 0.97508 1.19328 0.96317 0.90907 0.95759 1.20045 1.29528 0.99964 1.01134 1.24842 0.94517 0.95806 0.97448 1.69834 1.35936 1.09036 1.37984 0.86689 0.78698 0.78154 0.84990 1.20391 1.21646 1.18997 1.19774 0.95908 0.92541 0.97247 1.21902 0.99817 0.98282 0.94963 1.67547 1.04563 1.33912 1.29605 0.91823 0.91841 0.90086 0.91208 0.91028 0.84098 0.89850 0.90072 0.90273 0.75442 0.94571 0.92650 0.97589 0.92061 0.92577 0.96405 0.94742 0.93209 0.94740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.16 0.38 -1.11 16 2 C 0.06 0.83 6.06 37.16 0.23 1.05 16 3 O -0.30 -4.44 10.13 -18.24 -0.18 -4.62 16 4 C 0.41 6.44 7.53 -16.72 -0.13 6.31 16 5 C -0.32 -4.37 9.79 -39.15 -0.38 -4.76 16 6 C 0.24 3.20 6.81 -82.33 -0.56 2.64 16 7 C -0.10 -0.89 10.21 36.00 0.37 -0.52 16 8 N -0.60 -9.71 10.39 -10.22 -0.11 -9.82 16 9 C 0.61 10.75 8.40 -322.87 -2.71 8.03 16 10 N -0.69 -11.99 5.22 -55.85 -0.29 -12.28 16 11 C 0.17 3.29 2.34 -67.98 -0.16 3.13 16 12 H 0.08 1.66 7.50 -51.93 -0.39 1.27 16 13 C -0.12 -2.38 5.40 -26.64 -0.14 -2.52 16 14 C 0.01 0.36 5.97 -27.49 -0.16 0.20 16 15 C -0.49 -12.58 5.51 -98.92 -0.55 -13.12 16 16 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 17 N -0.89 -25.23 12.73 55.43 0.71 -24.52 16 18 Si 0.89 20.89 27.53 -169.99 -4.68 16.21 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.26 -6.08 6.11 56.52 0.35 -5.73 16 22 C -0.02 -0.38 5.60 -27.48 -0.15 -0.54 16 23 C -0.11 -2.31 5.51 -26.63 -0.15 -2.46 16 24 N -0.62 -10.91 8.14 -13.99 -0.11 -11.03 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 29 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 30 H 0.14 1.54 8.06 -52.48 -0.42 1.11 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.71 8.14 -51.94 -0.42 0.28 16 33 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.41 6.52 8.72 -40.82 -0.36 6.16 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.03 0.80 4.59 -51.93 -0.24 0.56 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 347.49 15.07 5.24 5.24 Total: -1.00 -29.14 347.49 -10.53 -39.67 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.88 Total: 2.85 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -4.22 Total: -1.70 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.19 Total: -57.65 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.18 Total: -4.62 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.68 Total: 16.21 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.14 -10.53 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.228 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds