Wall clock time and date at job start Tue Mar 31 2020 07:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35515 * 116.99801 * 179.97438 * 3 2 1 5 5 C 1.39434 * 120.46256 * 179.97438 * 4 3 2 6 6 C 1.38200 * 118.50732 * 180.02562 * 5 4 3 7 7 C 1.50697 * 120.37055 * 179.97438 * 6 5 4 8 8 N 1.32468 * 119.26708 * 0.02562 * 6 5 4 9 9 C 1.32458 * 120.88646 * 359.97438 * 8 6 5 10 10 N 1.38399 * 119.18891 * 180.02562 * 9 8 6 11 11 C 1.46500 * 120.00289 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.41482 * 34.99450 * 11 10 9 13 13 C 1.52950 * 109.41522 * 154.85703 * 11 10 9 14 14 C 1.53231 * 109.40593 * 183.70099 * 13 11 10 15 15 C 1.51268 * 108.53668 * 305.37540 * 14 13 11 16 16 C 1.37879 * 120.84975 * 231.32159 * 15 14 13 17 17 N 1.31522 * 119.99919 * 0.02562 * 16 15 14 18 18 Si 1.86803 * 120.00077 * 180.02562 * 16 15 14 19 19 H 1.48496 * 109.47067 * 90.00015 * 18 16 15 20 20 H 1.48505 * 109.47055 * 210.00224 * 18 16 15 21 21 H 1.48502 * 109.46974 * 330.00182 * 18 16 15 22 22 C 1.51266 * 118.30099 * 51.34687 * 15 14 13 23 23 C 1.52962 * 109.41265 * 275.14225 * 11 10 9 24 24 N 1.32489 * 121.62590 * 359.72798 * 9 8 6 25 25 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 26 26 H 1.08999 * 109.47084 * 60.00043 * 1 2 3 27 27 H 1.08999 * 109.47659 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 29 29 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 30 30 H 1.08003 * 120.75246 * 359.97438 * 5 4 3 31 31 H 1.09007 * 109.46822 * 89.99558 * 7 6 5 32 32 H 1.08989 * 109.47695 * 210.00021 * 7 6 5 33 33 H 1.09003 * 109.46904 * 330.00687 * 7 6 5 34 34 H 0.96998 * 119.99783 * 0.02562 * 10 9 8 35 35 H 1.08998 * 109.48893 * 303.68462 * 13 11 10 36 36 H 1.09003 * 109.47859 * 63.71248 * 13 11 10 37 37 H 1.08998 * 109.62293 * 65.08704 * 14 13 11 38 38 H 1.09000 * 109.62590 * 185.65983 * 14 13 11 39 39 H 0.96998 * 119.99645 * 180.02562 * 17 16 15 40 40 H 1.09000 * 109.62612 * 68.36581 * 22 15 14 41 41 H 1.09003 * 109.62687 * 188.74527 * 22 15 14 42 42 H 1.09001 * 109.47834 * 296.27471 * 23 11 10 43 43 H 1.09006 * 109.47987 * 56.31162 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3498 1.5248 0.0005 5 6 3.8931 2.8089 0.0000 6 6 5.2686 2.9431 0.0001 7 6 5.9006 4.3111 -0.0010 8 7 6.0253 1.8559 0.0001 9 6 5.4808 0.6484 0.0005 10 7 6.3048 -0.4636 0.0010 11 6 5.7215 -1.8075 0.0010 12 1 4.8049 -1.8047 -0.5890 13 6 6.7173 -2.7938 -0.6113 14 6 6.0727 -4.1814 -0.6962 15 6 5.5794 -4.5675 0.6807 16 6 5.9186 -5.7820 1.2384 17 7 6.6809 -6.6216 0.5722 18 14 5.2957 -6.2349 2.9403 19 1 3.9918 -6.9353 2.8199 20 1 6.2780 -7.1281 3.6055 21 1 5.1220 -5.0011 3.7483 22 6 4.7040 -3.5874 1.4298 23 6 5.3999 -2.2222 1.4378 24 7 4.1668 0.4789 0.0064 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.2535 3.6792 -0.0012 31 1 6.0528 4.6419 1.0264 32 1 6.8609 4.2674 -0.5147 33 1 5.2451 5.0138 -0.5155 34 1 7.2684 -0.3531 0.0014 35 1 6.9924 -2.4591 -1.6115 36 1 7.6092 -2.8447 0.0132 37 1 5.2334 -4.1533 -1.3911 38 1 6.8104 -4.9075 -1.0378 39 1 6.9192 -7.4761 0.9644 40 1 3.7381 -3.5043 0.9317 41 1 4.5595 -3.9336 2.4533 42 1 6.3236 -2.2871 2.0128 43 1 4.7406 -1.4817 1.8909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167841289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:23 Heat of formation + Delta-G solvation = -21.706820 kcal Electronic energy + Delta-G solvation = -23676.316610 eV Core-core repulsion = 20334.512122 eV Total energy + Delta-G solvation = -3341.804488 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.14019 -39.82712 -39.05274 -36.21971 -34.65405 -33.86859 -32.59809 -31.66892 -31.39712 -29.14612 -28.71587 -24.75309 -24.56128 -23.76200 -23.30797 -22.46622 -21.18311 -19.69122 -18.44232 -18.09700 -17.45500 -17.27880 -16.43306 -16.32419 -16.24141 -15.92943 -15.15336 -15.01230 -14.64805 -14.34353 -14.24165 -14.10955 -14.02452 -13.71915 -13.46955 -13.32376 -13.01965 -12.80919 -12.69521 -12.59539 -12.53685 -12.02844 -11.97129 -11.88682 -11.68838 -11.44706 -11.14295 -10.86474 -10.75681 -10.56921 -10.37997 -10.22460 -8.98043 -8.17539 -6.11806 0.26048 0.30837 1.37918 1.41125 1.48674 1.80123 2.01078 2.40183 2.89583 3.09658 3.14265 3.72215 3.91951 4.02756 4.04511 4.14939 4.19547 4.38002 4.43741 4.44934 4.50841 4.68892 4.77976 4.83397 4.87714 4.92516 4.92972 4.95983 5.02142 5.06045 5.15905 5.18094 5.23663 5.25190 5.44653 5.54765 5.60603 5.73907 5.79793 5.85930 5.98647 6.28107 6.33963 6.59742 6.93749 7.40366 7.46382 8.93138 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.004578 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.496348 B = 6114.296831 C = 7133.353498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.062 3.938 3 O -0.304 6.304 4 C 0.383 3.617 5 C -0.312 4.312 6 C 0.231 3.769 7 C -0.096 4.096 8 N -0.609 5.609 9 C 0.591 3.409 10 N -0.687 5.687 11 C 0.188 3.812 12 H 0.067 0.933 13 C -0.103 4.103 14 C 0.012 3.988 15 C -0.497 4.497 16 C 0.025 3.975 17 N -0.930 5.930 18 Si 0.937 3.063 19 H -0.274 1.274 20 H -0.292 1.292 21 H -0.253 1.253 22 C -0.016 4.016 23 C -0.100 4.100 24 N -0.639 5.639 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.172 0.828 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.416 0.584 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.001 0.999 38 H 0.032 0.968 39 H 0.263 0.737 40 H 0.020 0.980 41 H 0.034 0.966 42 H 0.044 0.956 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.875 19.905 -0.534 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.014 4.014 3 O -0.208 6.208 4 C 0.196 3.804 5 C -0.338 4.338 6 C 0.085 3.915 7 C -0.153 4.153 8 N -0.338 5.338 9 C 0.234 3.766 10 N -0.322 5.322 11 C 0.083 3.917 12 H 0.085 0.915 13 C -0.142 4.142 14 C -0.026 4.026 15 C -0.516 4.516 16 C -0.173 4.173 17 N -0.569 5.569 18 Si 0.764 3.236 19 H -0.199 1.199 20 H -0.218 1.218 21 H -0.178 1.178 22 C -0.054 4.054 23 C -0.140 4.140 24 N -0.380 5.380 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.189 0.811 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.253 0.747 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.019 0.981 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.038 0.962 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.581 18.930 -0.530 20.048 hybrid contribution -0.178 -0.626 0.734 0.981 sum -6.759 18.304 0.204 19.513 Atomic orbital electron populations 1.21808 0.90255 1.04173 1.03768 1.22769 0.96711 0.79972 1.01904 1.86209 1.16123 1.31784 1.86726 1.20126 0.84127 0.89953 0.86244 1.21619 0.96607 0.96241 1.19351 1.21901 0.89208 0.95374 0.84972 1.20868 1.01894 0.87701 1.04868 1.67870 1.40977 0.97530 1.27463 1.19073 0.84363 0.86595 0.86595 1.44562 1.07963 1.02199 1.77453 1.20610 0.96223 0.78436 0.96412 0.91498 1.21734 0.97723 0.96023 0.98697 1.19271 0.95580 0.92513 0.95235 1.20587 1.29052 1.00267 1.01694 1.25563 0.95053 0.96023 1.00686 1.69962 1.37847 1.09544 1.39589 0.85858 0.78153 0.78163 0.81427 1.19932 1.21837 1.17794 1.19759 0.95714 0.93148 0.96789 1.21753 0.99270 0.96997 0.95935 1.67480 1.04884 1.35275 1.30388 0.91031 0.90898 0.88837 0.92563 0.92681 0.81050 0.88200 0.89887 0.87471 0.74653 0.92768 0.92974 0.98071 0.94916 0.92769 0.96151 0.94760 0.93736 0.94303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 10.28 71.98 0.74 -1.84 16 2 C 0.06 1.59 6.06 71.98 0.44 2.03 16 3 O -0.30 -8.48 10.13 -88.17 -0.89 -9.38 16 4 C 0.38 11.69 7.53 84.85 0.64 12.32 16 5 C -0.31 -7.66 9.79 22.55 0.22 -7.44 16 6 C 0.23 5.61 6.81 42.45 0.29 5.90 16 7 C -0.10 -1.34 10.21 71.23 0.73 -0.61 16 8 N -0.61 -18.74 10.39 -186.26 -1.94 -20.67 16 9 C 0.59 20.41 8.40 261.51 2.20 22.60 16 10 N -0.69 -23.57 5.22 -330.61 -1.72 -25.29 16 11 C 0.19 7.28 2.34 44.96 0.11 7.38 16 12 H 0.07 2.79 7.50 -2.39 -0.02 2.77 16 13 C -0.10 -4.24 5.40 30.65 0.17 -4.08 16 14 C 0.01 0.60 5.97 30.11 0.18 0.78 16 15 C -0.50 -25.90 5.51 -16.17 -0.09 -25.99 16 16 C 0.03 1.37 5.46 84.65 0.46 1.83 16 17 N -0.93 -54.08 12.73 21.45 0.27 -53.80 16 18 Si 0.94 43.01 27.53 68.60 1.89 44.90 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.25 -11.04 6.11 99.48 0.61 -10.44 16 22 C -0.02 -0.74 5.60 30.11 0.17 -0.57 16 23 C -0.10 -4.14 5.51 30.66 0.17 -3.97 16 24 N -0.64 -22.30 8.14 -310.89 -2.53 -24.83 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.58 8.12 -2.39 -0.02 1.56 16 29 H 0.05 1.59 8.11 -2.39 -0.02 1.57 16 30 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.11 0.92 8.09 -2.39 -0.02 0.90 16 34 H 0.42 12.91 8.72 -92.71 -0.81 12.10 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.03 1.79 7.07 -2.39 -0.02 1.77 16 39 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 40 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.03 1.56 4.59 -2.39 -0.01 1.55 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -63.44 347.49 1.59 -61.85 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.10 Total: 18.88 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 6.41 Total: 8.35 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -5.92 Total: -124.60 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.89 Total: -9.38 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.89 Total: 44.90 kcal Total: -63.44 1.59 -61.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.142 kcal (2) G-P(sol) polarization free energy of solvation -63.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds