Wall clock time and date at job start Tue Mar 31 2020 07:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 O 1.42895 * 109.47000 * 120.00066 * 2 1 3 5 5 C 1.35806 * 116.99462 * 149.99965 * 4 2 1 6 6 C 1.39388 * 120.05035 * 179.97438 * 5 4 2 7 7 C 1.38415 * 117.97757 * 179.97438 * 6 5 4 8 8 C 1.39548 * 117.95137 * 359.97438 * 7 6 5 9 9 N 1.39296 * 120.09898 * 179.97438 * 8 7 6 10 10 C 1.46495 * 120.00077 * 0.02562 * 9 8 7 11 11 H 1.09005 * 109.41773 * 34.99696 * 10 9 8 12 12 C 1.52960 * 109.41612 * 154.85216 * 10 9 8 13 13 C 1.53223 * 109.40510 * 183.70127 * 12 10 9 14 14 C 1.51272 * 108.53971 * 305.37555 * 13 12 10 15 15 C 1.37877 * 120.84800 * 231.32392 * 14 13 12 16 16 N 1.31515 * 120.00252 * 359.97438 * 15 14 13 17 17 Si 1.86802 * 119.99590 * 179.97438 * 15 14 13 18 18 H 1.48500 * 109.47018 * 90.00393 * 17 15 14 19 19 H 1.48505 * 109.47252 * 209.99923 * 17 15 14 20 20 H 1.48495 * 109.47303 * 330.00055 * 17 15 14 21 21 C 1.51268 * 118.29892 * 51.34911 * 14 13 12 22 22 C 1.52957 * 109.41188 * 275.13614 * 10 9 8 23 23 N 1.32314 * 119.80510 * 0.02562 * 8 7 6 24 24 N 1.28353 * 122.16199 * 359.72858 * 23 8 7 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 28 28 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 32 32 H 1.07999 * 121.01426 * 359.95450 * 6 5 4 33 33 H 1.08004 * 121.02533 * 180.02562 * 7 6 5 34 34 H 0.97005 * 119.99672 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.48808 * 303.68573 * 12 10 9 36 36 H 1.09004 * 109.47748 * 63.72601 * 12 10 9 37 37 H 1.09000 * 109.62535 * 65.09280 * 13 12 10 38 38 H 1.09004 * 109.62584 * 185.66137 * 13 12 10 39 39 H 0.96997 * 119.99582 * 179.97438 * 16 15 14 40 40 H 1.08998 * 109.62726 * 68.36460 * 21 14 13 41 41 H 1.08997 * 109.62562 * 188.74664 * 21 14 13 42 42 H 1.08994 * 109.48526 * 296.27247 * 22 10 9 43 43 H 1.09007 * 109.47977 * 56.31721 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.1999 -1.3136 1.0650 6 6 3.7247 -1.9907 2.1645 7 6 4.9438 -2.6285 2.0129 8 6 5.5707 -2.5540 0.7685 9 7 6.7991 -3.1791 0.5665 10 6 7.4344 -3.9165 1.6613 11 1 6.6670 -4.3988 2.2668 12 6 8.3687 -4.9806 1.0828 13 6 8.9621 -5.8122 2.2247 14 6 9.6213 -4.8737 3.2111 15 6 10.9191 -5.0828 3.6270 16 7 11.6001 -6.1092 3.1660 17 14 11.7100 -3.9084 4.8455 18 1 11.4531 -4.3832 6.2288 19 1 13.1744 -3.8566 4.6039 20 1 11.1315 -2.5518 4.6723 21 6 8.8200 -3.7002 3.7298 22 6 8.2332 -2.9453 2.5322 23 7 4.9954 -1.8870 -0.2189 24 7 3.8627 -1.3000 -0.0780 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 3.1965 -2.0167 3.1061 33 1 5.3955 -3.1680 2.8324 34 1 7.2334 -3.1266 -0.2993 35 1 7.8075 -5.6316 0.4125 36 1 9.1733 -4.4959 0.5298 37 1 8.1683 -6.3687 2.7231 38 1 9.7038 -6.5045 1.8263 39 1 12.5132 -6.2560 3.4584 40 1 8.0131 -4.0611 4.3675 41 1 9.4696 -3.0373 4.3012 42 1 9.0411 -2.5100 1.9442 43 1 7.5757 -2.1529 2.8899 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167842463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:38 Heat of formation + Delta-G solvation = 5.610876 kcal Electronic energy + Delta-G solvation = -23082.682384 eV Core-core repulsion = 19742.062480 eV Total energy + Delta-G solvation = -3340.619904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.02823 -38.90832 -37.61565 -34.65447 -33.63345 -32.44413 -31.87379 -29.99961 -29.40413 -27.47408 -26.90554 -24.84596 -23.43637 -21.92920 -21.70178 -21.20864 -19.55935 -18.46755 -17.73445 -17.04868 -16.14585 -15.90040 -15.07953 -14.66483 -14.54123 -14.46778 -14.21656 -13.72204 -13.47239 -13.20556 -12.94674 -12.64077 -12.54655 -12.46598 -12.30441 -12.17596 -11.85704 -11.55911 -11.28761 -11.12689 -11.03230 -10.91323 -10.76244 -10.40337 -10.23601 -10.07478 -9.76129 -9.49846 -9.33751 -9.06759 -8.76768 -8.56013 -7.46861 -6.19135 -4.11301 0.92875 1.44287 2.89742 3.21184 3.29921 3.30603 3.39359 3.80765 4.30322 4.39619 4.66893 4.71269 4.79097 4.90810 5.04007 5.07181 5.10806 5.33037 5.38760 5.47152 5.52279 5.60800 5.69818 5.72701 5.80458 5.92952 5.97008 6.00837 6.15665 6.34823 6.44970 6.59699 6.67388 6.72399 6.89923 6.99309 7.19578 7.28109 7.39767 7.55765 7.59729 7.71340 7.89675 8.27026 8.86599 8.99702 9.44950 10.90140 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.036043 B = 0.003059 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.666489 B = 9150.436935 C = 9472.080884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.081 3.919 3 C -0.169 4.169 4 O -0.304 6.304 5 C 0.201 3.799 6 C -0.094 4.094 7 C -0.143 4.143 8 C 0.329 3.671 9 N -0.706 5.706 10 C 0.160 3.840 11 H 0.071 0.929 12 C -0.113 4.113 13 C 0.013 3.987 14 C -0.492 4.492 15 C 0.077 3.923 16 N -0.888 5.888 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.264 1.264 21 C -0.019 4.019 22 C -0.119 4.119 23 N -0.289 5.289 24 N -0.265 5.265 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.404 0.596 35 H 0.038 0.962 36 H 0.057 0.943 37 H 0.006 0.994 38 H 0.062 0.938 39 H 0.265 0.735 40 H 0.018 0.982 41 H 0.037 0.963 42 H 0.057 0.943 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.591 9.459 -3.714 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.024 3.976 3 C -0.226 4.226 4 O -0.210 6.210 5 C 0.010 3.990 6 C -0.123 4.123 7 C -0.176 4.176 8 C 0.084 3.916 9 N -0.339 5.339 10 C 0.057 3.943 11 H 0.089 0.911 12 C -0.152 4.152 13 C -0.025 4.025 14 C -0.511 4.511 15 C -0.126 4.126 16 N -0.525 5.525 17 Si 0.715 3.285 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.189 1.189 21 C -0.057 4.057 22 C -0.159 4.159 23 N -0.142 5.142 24 N -0.118 5.118 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.239 0.761 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.025 0.975 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -16.504 9.805 -4.886 19.809 hybrid contribution 0.720 0.257 1.643 1.812 sum -15.784 10.062 -3.242 18.997 Atomic orbital electron populations 1.21894 0.93019 1.02914 1.02813 1.22311 0.94354 0.92762 0.88168 1.22217 1.02311 0.95732 1.02378 1.86246 1.31337 1.65199 1.38173 1.21054 0.89053 0.96204 0.92661 1.21310 0.95470 0.96640 0.98926 1.21918 0.95382 1.02032 0.98318 1.20067 0.88842 0.91648 0.91007 1.45045 1.17545 1.55322 1.16011 1.21171 0.94341 0.92097 0.86727 0.91102 1.21921 0.96996 0.96409 0.99869 1.19349 0.95902 0.95133 0.92091 1.20015 0.97078 1.08896 1.25075 1.24851 0.96524 0.95301 0.95900 1.69826 1.10876 1.28472 1.43337 0.86684 0.78188 0.81982 0.81652 1.20353 1.21599 1.18947 1.19806 0.96820 0.95692 0.93412 1.22048 0.98325 0.96784 0.98714 1.72691 1.04143 1.11406 1.25973 1.72585 1.02650 1.16277 1.20281 0.90600 0.91866 0.91729 0.89436 0.91196 0.92089 0.91928 0.83149 0.82599 0.76056 0.94320 0.92427 0.97543 0.91952 0.92475 0.96402 0.94447 0.92447 0.94785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.56 37.16 0.36 -0.82 16 2 C 0.08 0.86 3.12 -26.73 -0.08 0.77 16 3 C -0.17 -1.62 9.53 37.16 0.35 -1.27 16 4 O -0.30 -3.94 9.78 -19.13 -0.19 -4.12 16 5 C 0.20 2.90 7.54 -16.99 -0.13 2.77 16 6 C -0.09 -1.22 10.15 -39.09 -0.40 -1.62 16 7 C -0.14 -2.02 8.92 -39.03 -0.35 -2.37 16 8 C 0.33 5.22 7.73 -154.65 -1.20 4.02 16 9 N -0.71 -11.12 5.25 -53.80 -0.28 -11.40 16 10 C 0.16 2.76 2.05 -67.98 -0.14 2.62 16 11 H 0.07 1.20 6.49 -51.93 -0.34 0.86 16 12 C -0.11 -2.17 5.40 -26.64 -0.14 -2.31 16 13 C 0.01 0.30 5.97 -27.49 -0.16 0.14 16 14 C -0.49 -12.10 5.51 -98.92 -0.55 -12.64 16 15 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 16 N -0.89 -24.53 12.73 55.43 0.71 -23.83 16 17 Si 0.89 20.22 27.53 -169.99 -4.68 15.55 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.26 -5.83 6.11 56.52 0.35 -5.48 16 21 C -0.02 -0.41 5.60 -27.48 -0.15 -0.57 16 22 C -0.12 -2.24 5.46 -26.63 -0.15 -2.38 16 23 N -0.29 -4.88 11.52 31.27 0.36 -4.52 16 24 N -0.26 -4.23 9.81 30.51 0.30 -3.93 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 1.03 7.00 -51.93 -0.36 0.66 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.16 2.04 6.32 -52.48 -0.33 1.71 16 34 H 0.40 6.06 8.73 -40.82 -0.36 5.70 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.04 0.81 4.59 -51.93 -0.24 0.58 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.03 0.58 7.78 -51.93 -0.40 0.18 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -27.66 342.86 -8.11 -35.77 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.66 Total: 3.05 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -2.83 Total: -11.73 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 1.08 Total: -43.68 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.19 Total: -4.12 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.68 Total: 15.55 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.66 -8.11 -35.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.384 kcal (2) G-P(sol) polarization free energy of solvation -27.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds