Wall clock time and date at job start Tue Mar 31 2020 07:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 O 1.42895 * 109.47000 * 120.00066 * 2 1 3 5 5 C 1.35806 * 116.99462 * 149.99965 * 4 2 1 6 6 C 1.39388 * 120.05035 * 179.97438 * 5 4 2 7 7 C 1.38415 * 117.97757 * 179.97438 * 6 5 4 8 8 C 1.39548 * 117.95137 * 359.97438 * 7 6 5 9 9 N 1.39296 * 120.09898 * 179.97438 * 8 7 6 10 10 C 1.46495 * 120.00077 * 0.02562 * 9 8 7 11 11 H 1.09005 * 109.41773 * 34.99696 * 10 9 8 12 12 C 1.52960 * 109.41612 * 154.85216 * 10 9 8 13 13 C 1.53223 * 109.40510 * 183.70127 * 12 10 9 14 14 C 1.51272 * 108.53971 * 305.37555 * 13 12 10 15 15 C 1.37877 * 120.84800 * 231.32392 * 14 13 12 16 16 N 1.31515 * 120.00252 * 359.97438 * 15 14 13 17 17 Si 1.86802 * 119.99590 * 179.97438 * 15 14 13 18 18 H 1.48500 * 109.47018 * 90.00393 * 17 15 14 19 19 H 1.48505 * 109.47252 * 209.99923 * 17 15 14 20 20 H 1.48495 * 109.47303 * 330.00055 * 17 15 14 21 21 C 1.51268 * 118.29892 * 51.34911 * 14 13 12 22 22 C 1.52957 * 109.41188 * 275.13614 * 10 9 8 23 23 N 1.32314 * 119.80510 * 0.02562 * 8 7 6 24 24 N 1.28353 * 122.16199 * 359.72858 * 23 8 7 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 28 28 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 32 32 H 1.07999 * 121.01426 * 359.95450 * 6 5 4 33 33 H 1.08004 * 121.02533 * 180.02562 * 7 6 5 34 34 H 0.97005 * 119.99672 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.48808 * 303.68573 * 12 10 9 36 36 H 1.09004 * 109.47748 * 63.72601 * 12 10 9 37 37 H 1.09000 * 109.62535 * 65.09280 * 13 12 10 38 38 H 1.09004 * 109.62584 * 185.66137 * 13 12 10 39 39 H 0.96997 * 119.99582 * 179.97438 * 16 15 14 40 40 H 1.08998 * 109.62726 * 68.36460 * 21 14 13 41 41 H 1.08997 * 109.62562 * 188.74664 * 21 14 13 42 42 H 1.08994 * 109.48526 * 296.27247 * 22 10 9 43 43 H 1.09007 * 109.47977 * 56.31721 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.1999 -1.3136 1.0650 6 6 3.7247 -1.9907 2.1645 7 6 4.9438 -2.6285 2.0129 8 6 5.5707 -2.5540 0.7685 9 7 6.7991 -3.1791 0.5665 10 6 7.4344 -3.9165 1.6613 11 1 6.6670 -4.3988 2.2668 12 6 8.3687 -4.9806 1.0828 13 6 8.9621 -5.8122 2.2247 14 6 9.6213 -4.8737 3.2111 15 6 10.9191 -5.0828 3.6270 16 7 11.6001 -6.1092 3.1660 17 14 11.7100 -3.9084 4.8455 18 1 11.4531 -4.3832 6.2288 19 1 13.1744 -3.8566 4.6039 20 1 11.1315 -2.5518 4.6723 21 6 8.8200 -3.7002 3.7298 22 6 8.2332 -2.9453 2.5322 23 7 4.9954 -1.8870 -0.2189 24 7 3.8627 -1.3000 -0.0780 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 3.1965 -2.0167 3.1061 33 1 5.3955 -3.1680 2.8324 34 1 7.2334 -3.1266 -0.2993 35 1 7.8075 -5.6316 0.4125 36 1 9.1733 -4.4959 0.5298 37 1 8.1683 -6.3687 2.7231 38 1 9.7038 -6.5045 1.8263 39 1 12.5132 -6.2560 3.4584 40 1 8.0131 -4.0611 4.3675 41 1 9.4696 -3.0373 4.3012 42 1 9.0411 -2.5100 1.9442 43 1 7.5757 -2.1529 2.8899 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167842463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:38 Heat of formation + Delta-G solvation = -11.123508 kcal Electronic energy + Delta-G solvation = -23083.408041 eV Core-core repulsion = 19742.062480 eV Total energy + Delta-G solvation = -3341.345561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.14257 -39.98696 -39.01256 -36.13265 -34.57343 -33.86144 -33.18336 -31.57505 -30.84381 -28.51068 -28.10576 -25.95126 -24.74923 -23.32900 -23.27900 -22.35867 -21.06588 -19.48941 -18.92972 -18.22956 -17.85301 -16.93228 -16.41039 -16.29894 -15.68653 -15.51019 -15.31592 -15.03238 -14.63102 -14.48535 -14.41880 -14.05308 -13.95329 -13.55146 -13.41293 -13.19535 -13.00263 -12.78131 -12.76789 -12.69273 -12.41984 -12.10791 -11.93660 -11.85726 -11.73727 -11.53523 -11.25289 -10.87155 -10.78743 -10.55651 -10.42796 -10.40040 -8.69391 -8.14942 -6.08904 -0.15289 0.31894 1.40377 1.44155 1.50743 1.87030 2.21982 2.42427 2.66842 3.13869 3.33341 3.66513 3.79244 3.92088 3.99057 4.04490 4.07821 4.19997 4.29569 4.41555 4.47981 4.71703 4.73685 4.78606 4.82968 4.87055 4.91837 4.97117 4.99639 5.05794 5.09135 5.20064 5.23311 5.27809 5.29009 5.30284 5.61967 5.66631 5.77814 5.85953 6.06418 6.26976 6.35626 6.65950 6.98747 7.49384 7.85094 8.95654 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.036043 B = 0.003059 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.666489 B = 9150.436935 C = 9472.080884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 C -0.164 4.164 4 O -0.307 6.307 5 C 0.199 3.801 6 C -0.085 4.085 7 C -0.144 4.144 8 C 0.318 3.682 9 N -0.705 5.705 10 C 0.175 3.825 11 H 0.082 0.918 12 C -0.103 4.103 13 C 0.009 3.991 14 C -0.496 4.496 15 C 0.021 3.979 16 N -0.932 5.932 17 Si 0.936 3.064 18 H -0.275 1.275 19 H -0.298 1.298 20 H -0.249 1.249 21 C -0.022 4.022 22 C -0.113 4.113 23 N -0.314 5.314 24 N -0.285 5.285 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.184 0.816 33 H 0.171 0.829 34 H 0.406 0.594 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.009 0.991 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.043 0.957 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.079 11.175 -2.941 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 C -0.222 4.222 4 O -0.212 6.212 5 C 0.008 3.992 6 C -0.114 4.114 7 C -0.177 4.177 8 C 0.074 3.926 9 N -0.339 5.339 10 C 0.071 3.929 11 H 0.100 0.900 12 C -0.142 4.142 13 C -0.029 4.029 14 C -0.515 4.515 15 C -0.177 4.177 16 N -0.572 5.572 17 Si 0.763 3.237 18 H -0.200 1.200 19 H -0.225 1.225 20 H -0.173 1.173 21 C -0.060 4.060 22 C -0.152 4.152 23 N -0.166 5.166 24 N -0.137 5.137 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.201 0.799 33 H 0.188 0.812 34 H 0.242 0.758 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.027 0.973 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.034 11.555 -4.124 22.646 hybrid contribution 1.344 -0.262 1.370 1.937 sum -17.690 11.293 -2.754 21.167 Atomic orbital electron populations 1.21898 0.90642 1.03276 1.04211 1.22573 0.96151 0.92828 0.86881 1.22191 1.00760 0.95415 1.03814 1.86260 1.30585 1.65117 1.39281 1.21345 0.89294 0.95874 0.92695 1.21677 0.94975 0.95079 0.99706 1.22105 0.95665 1.02046 0.97887 1.20183 0.88795 0.91889 0.91739 1.44759 1.17780 1.55689 1.15648 1.20842 0.93995 0.91228 0.86824 0.89979 1.21697 0.97214 0.96737 0.98507 1.19306 0.95213 0.95095 0.93283 1.20672 0.97192 1.09531 1.24154 1.25596 0.97624 0.96676 0.97807 1.69969 1.11070 1.30640 1.45559 0.85873 0.76886 0.81067 0.79836 1.20023 1.22496 1.17325 1.19832 0.96874 0.94656 0.94608 1.21929 0.98394 0.97230 0.97631 1.72617 1.04797 1.12272 1.26896 1.72531 1.02763 1.17037 1.21417 0.88502 0.92039 0.91016 0.90917 0.89161 0.91281 0.94234 0.79883 0.81187 0.75808 0.92641 0.93527 0.97304 0.95394 0.92964 0.94899 0.94732 0.93779 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.56 71.98 0.69 -1.20 16 2 C 0.07 1.41 3.12 30.60 0.10 1.50 16 3 C -0.16 -2.87 9.53 71.98 0.69 -2.19 16 4 O -0.31 -7.32 9.78 -91.37 -0.89 -8.22 16 5 C 0.20 5.37 7.54 84.92 0.64 6.01 16 6 C -0.09 -1.95 10.15 22.59 0.23 -1.73 16 7 C -0.14 -3.63 8.92 22.63 0.20 -3.43 16 8 C 0.32 9.50 7.73 133.09 1.03 10.53 16 9 N -0.71 -20.92 5.25 -324.12 -1.70 -22.62 16 10 C 0.18 5.67 2.05 44.96 0.09 5.76 16 11 H 0.08 2.52 6.49 -2.38 -0.02 2.50 16 12 C -0.10 -3.85 5.40 30.66 0.17 -3.69 16 13 C 0.01 0.42 5.97 30.10 0.18 0.60 16 14 C -0.50 -24.26 5.51 -16.17 -0.09 -24.34 16 15 C 0.02 1.11 5.46 84.65 0.46 1.57 16 16 N -0.93 -53.17 12.73 21.45 0.27 -52.90 16 17 Si 0.94 41.52 27.53 68.60 1.89 43.41 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.25 -10.29 6.11 99.48 0.61 -9.68 16 21 C -0.02 -0.88 5.60 30.11 0.17 -0.71 16 22 C -0.11 -3.95 5.46 30.66 0.17 -3.78 16 23 N -0.31 -10.27 11.52 -54.99 -0.63 -10.90 16 24 N -0.28 -8.82 9.81 -170.23 -1.67 -10.49 16 25 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.65 7.00 -2.39 -0.02 1.63 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.17 3.77 6.32 -2.91 -0.02 3.75 16 34 H 0.41 11.70 8.73 -92.70 -0.81 10.89 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.03 1.46 7.07 -2.39 -0.02 1.45 16 39 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.03 1.42 4.59 -2.39 -0.01 1.41 16 42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.73 7.78 -2.38 -0.02 1.71 16 Total: -1.00 -60.34 342.86 2.09 -58.25 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.11 Total: 18.56 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 4.72 Total: -15.09 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -3.73 Total: -96.91 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.89 Total: -8.22 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.89 Total: 43.41 kcal Total: -60.34 2.09 -58.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.127 kcal (2) G-P(sol) polarization free energy of solvation -60.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds