Wall clock time and date at job start Tue Mar 31 2020 07:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42909 * 109.47019 * 2 1 4 4 C 1.35540 * 116.99804 * 180.02562 * 3 2 1 5 5 C 1.38925 * 120.46478 * 180.02562 * 4 3 2 6 6 C 1.39236 * 118.28668 * 179.72498 * 5 4 3 7 7 N 1.38610 * 120.49289 * 179.97438 * 6 5 4 8 8 C 1.46495 * 120.00373 * 359.97438 * 7 6 5 9 9 H 1.09005 * 109.40870 * 324.85860 * 8 7 6 10 10 C 1.52959 * 109.41544 * 84.64576 * 8 7 6 11 11 C 1.53231 * 109.40235 * 183.70612 * 10 8 7 12 12 C 1.51258 * 108.53960 * 305.37117 * 11 10 8 13 13 C 1.37880 * 120.85421 * 231.32837 * 12 11 10 14 14 N 1.31514 * 120.00002 * 180.02562 * 13 12 11 15 15 Si 1.86801 * 119.99848 * 0.02562 * 13 12 11 16 16 H 1.48494 * 109.46995 * 89.99712 * 15 13 12 17 17 H 1.48497 * 109.47098 * 210.00116 * 15 13 12 18 18 H 1.48499 * 109.46710 * 329.99888 * 15 13 12 19 19 C 1.51275 * 118.30008 * 51.35022 * 12 11 10 20 20 C 1.52958 * 109.41518 * 205.00369 * 8 7 6 21 21 N 1.33150 * 119.01098 * 359.97438 * 6 5 4 22 22 C 1.31723 * 120.83184 * 0.02562 * 21 6 5 23 23 C 1.50693 * 119.05415 * 179.97438 * 22 21 6 24 24 N 1.31780 * 121.89323 * 359.97438 * 22 21 6 25 25 H 1.09000 * 109.46985 * 299.99571 * 1 2 3 26 26 H 1.08994 * 109.47019 * 59.99770 * 1 2 3 27 27 H 1.09001 * 109.47037 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46985 * 240.00429 * 2 1 3 29 29 H 1.08996 * 109.47714 * 119.99968 * 2 1 3 30 30 H 1.08001 * 120.85473 * 359.74097 * 5 4 3 31 31 H 0.97005 * 119.99623 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.47894 * 303.68712 * 10 8 7 33 33 H 1.09004 * 109.47962 * 63.72670 * 10 8 7 34 34 H 1.09005 * 109.62405 * 185.65841 * 11 10 8 35 35 H 1.09001 * 109.78397 * 65.18905 * 11 10 8 36 36 H 0.97000 * 119.99609 * 180.02562 * 14 13 12 37 37 H 1.08998 * 109.62647 * 188.93818 * 19 12 11 38 38 H 1.08998 * 109.62446 * 68.36683 * 19 12 11 39 39 H 1.09000 * 109.47892 * 296.27203 * 20 8 7 40 40 H 1.08995 * 109.48422 * 56.31255 * 20 8 7 41 41 H 1.09008 * 109.47155 * 89.99790 * 23 22 21 42 42 H 1.09006 * 109.47132 * 209.99525 * 23 22 21 43 43 H 1.08996 * 109.47287 * 329.99815 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3501 1.5249 -0.0005 5 6 3.8915 2.8043 0.0000 6 6 5.2778 2.9342 0.0053 7 7 5.8667 4.1889 0.0054 8 6 5.0295 5.3911 -0.0005 9 1 4.1352 5.2068 -0.5959 10 6 4.6222 5.7342 1.4333 11 6 3.6718 6.9361 1.4188 12 6 4.3408 8.0692 0.6729 13 6 4.4301 9.3272 1.2302 14 7 5.0150 10.3004 0.5665 15 14 3.7203 9.6492 2.9278 16 1 4.7601 9.3911 3.9561 17 1 3.2750 11.0630 3.0181 18 1 2.5617 8.7495 3.1586 19 6 4.9090 7.7871 -0.7004 20 6 5.8145 6.5543 -0.6091 21 7 6.0292 1.8350 0.0101 22 6 5.4766 0.6393 0.0095 23 6 6.3653 -0.5777 0.0146 24 7 4.1688 0.4768 0.0045 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2535 3.6758 -0.0034 31 1 6.8333 4.2710 0.0095 32 1 4.1190 4.8781 1.8829 33 1 5.5108 5.9803 2.0147 34 1 3.4586 7.2466 2.4417 35 1 2.7426 6.6656 0.9172 36 1 5.0781 11.1853 0.9587 37 1 5.4907 8.6443 -1.0391 38 1 4.0961 7.5932 -1.4002 39 1 6.6749 6.7811 0.0206 40 1 6.1563 6.2797 -1.6069 41 1 6.5755 -0.8698 1.0435 42 1 5.8628 -1.3967 -0.5002 43 1 7.3003 -0.3469 -0.4959 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:35 Heat of formation + Delta-G solvation = -9.789221 kcal Electronic energy + Delta-G solvation = -23329.061738 eV Core-core repulsion = 19987.774036 eV Total energy + Delta-G solvation = -3341.287702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97777 -38.70882 -37.71780 -34.90571 -32.91804 -32.41846 -31.15820 -30.74924 -29.74504 -28.23514 -27.11651 -23.90277 -22.91664 -22.63309 -21.58863 -21.09633 -19.60110 -18.36857 -17.90013 -16.39696 -16.16716 -15.59747 -15.08204 -14.88714 -14.72836 -14.46906 -14.22307 -13.48801 -13.43603 -13.21116 -12.98250 -12.73760 -12.67967 -12.44199 -12.27384 -12.15780 -11.78173 -11.72155 -11.32298 -11.06286 -10.91099 -10.76828 -10.54878 -10.44493 -10.13593 -10.00280 -9.63159 -9.20596 -9.08606 -8.96384 -8.77206 -8.53313 -7.77681 -6.16962 -4.08522 1.29047 1.64041 2.86936 3.22870 3.32587 3.33977 3.38958 4.02901 4.10080 4.33200 4.62647 4.86823 4.91379 5.09587 5.14482 5.27077 5.41257 5.47389 5.48331 5.51486 5.62459 5.67687 5.70095 5.72604 5.88362 5.90311 6.03867 6.23725 6.37875 6.45303 6.61513 6.68385 6.75820 6.87258 6.97661 7.06172 7.32219 7.32868 7.51906 7.58487 7.62638 7.74243 7.89000 8.29770 8.46773 8.88983 9.47730 10.92450 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.003953 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.944018 B = 7082.207520 C = 8010.554395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.067 3.933 3 O -0.302 6.302 4 C 0.387 3.613 5 C -0.320 4.320 6 C 0.468 3.532 7 N -0.696 5.696 8 C 0.157 3.843 9 H 0.075 0.925 10 C -0.119 4.119 11 C -0.013 4.013 12 C -0.492 4.492 13 C 0.078 3.922 14 N -0.888 5.888 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.266 1.266 19 C 0.014 3.986 20 C -0.113 4.113 21 N -0.601 5.601 22 C 0.387 3.613 23 C -0.081 4.081 24 N -0.621 5.621 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.149 0.851 31 H 0.404 0.596 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.032 0.968 35 H 0.019 0.981 36 H 0.265 0.735 37 H 0.062 0.938 38 H 0.007 0.993 39 H 0.057 0.943 40 H 0.038 0.962 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.066 -18.976 -1.114 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.008 4.008 3 O -0.207 6.207 4 C 0.205 3.795 5 C -0.349 4.349 6 C 0.225 3.775 7 N -0.324 5.324 8 C 0.054 3.946 9 H 0.093 0.907 10 C -0.158 4.158 11 C -0.051 4.051 12 C -0.511 4.511 13 C -0.125 4.125 14 N -0.525 5.525 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.192 1.192 19 C -0.024 4.024 20 C -0.152 4.152 21 N -0.330 5.330 22 C 0.117 3.883 23 C -0.139 4.139 24 N -0.358 5.358 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.167 0.833 31 H 0.240 0.760 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.025 0.975 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.885 -19.117 -1.116 19.242 hybrid contribution -0.467 0.878 1.007 1.416 sum -2.352 -18.239 -0.109 18.390 Atomic orbital electron populations 1.21827 0.93091 1.02726 1.03473 1.22600 0.94632 0.81112 1.02504 1.86236 1.16790 1.30603 1.87060 1.19547 0.83763 0.89355 0.86840 1.21032 0.94843 0.97223 1.21800 1.18241 0.87768 0.86424 0.85061 1.45185 1.09807 1.01607 1.75823 1.21247 0.93413 0.82044 0.97902 0.90653 1.22036 1.00546 0.98428 0.94839 1.19720 0.94696 0.93549 0.97164 1.20015 1.36362 0.93235 1.01489 1.24839 0.94604 0.95611 0.97480 1.69828 1.42699 1.02064 1.37956 0.86662 0.80014 0.77100 0.84625 1.20400 1.21576 1.19152 1.19343 0.94349 0.92951 0.95774 1.21931 0.99611 0.95997 0.97650 1.67816 1.40367 0.97849 1.27008 1.22461 0.86893 0.91976 0.86928 1.20512 0.97686 0.92113 1.03597 1.67863 1.05818 1.33747 1.28338 0.91581 0.91600 0.90397 0.91622 0.91607 0.83321 0.75988 0.94495 0.92541 0.94920 0.96237 0.92493 0.91925 0.97485 0.92446 0.94333 0.89834 0.89951 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.07 0.74 6.06 37.16 0.23 0.96 16 3 O -0.30 -4.45 10.13 -18.31 -0.19 -4.64 16 4 C 0.39 6.26 7.52 -16.79 -0.13 6.13 16 5 C -0.32 -5.43 8.83 -38.96 -0.34 -5.77 16 6 C 0.47 7.92 7.68 -154.72 -1.19 6.74 16 7 N -0.70 -11.47 5.23 -53.87 -0.28 -11.75 16 8 C 0.16 2.87 2.05 -67.98 -0.14 2.73 16 9 H 0.08 1.41 6.52 -51.93 -0.34 1.07 16 10 C -0.12 -2.36 5.45 -26.63 -0.15 -2.50 16 11 C -0.01 -0.29 5.59 -27.49 -0.15 -0.45 16 12 C -0.49 -12.43 5.51 -98.92 -0.55 -12.98 16 13 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 14 N -0.89 -24.86 12.73 55.43 0.71 -24.16 16 15 Si 0.89 20.70 27.27 -169.99 -4.64 16.06 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.05 6.46 56.52 0.37 -5.68 16 19 C 0.01 0.32 5.97 -27.48 -0.16 0.16 16 20 C -0.11 -2.23 5.40 -26.63 -0.14 -2.38 16 21 N -0.60 -9.71 10.36 -10.02 -0.10 -9.81 16 22 C 0.39 5.64 7.64 -157.27 -1.20 4.44 16 23 C -0.08 -0.79 10.32 36.00 0.37 -0.42 16 24 N -0.62 -9.45 9.27 -10.86 -0.10 -9.55 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 29 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 30 H 0.15 2.55 6.32 -52.49 -0.33 2.22 16 31 H 0.40 6.18 8.72 -40.82 -0.36 5.82 16 32 H 0.04 0.69 7.76 -51.93 -0.40 0.29 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.74 4.78 -51.93 -0.25 0.49 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 38 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -28.47 344.72 -9.39 -37.86 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.71 Total: 3.07 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.27 Total: -2.28 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.22 Total: -55.27 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.19 Total: -4.64 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.64 Total: 16.06 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.47 -9.39 -37.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.071 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds