Wall clock time and date at job start Tue Mar 31 2020 07:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42909 * 109.47019 * 2 1 4 4 C 1.35540 * 116.99804 * 180.02562 * 3 2 1 5 5 C 1.38925 * 120.46478 * 180.02562 * 4 3 2 6 6 C 1.39236 * 118.28668 * 179.72498 * 5 4 3 7 7 N 1.38610 * 120.49289 * 179.97438 * 6 5 4 8 8 C 1.46495 * 120.00373 * 359.97438 * 7 6 5 9 9 H 1.09005 * 109.40870 * 324.85860 * 8 7 6 10 10 C 1.52959 * 109.41544 * 84.64576 * 8 7 6 11 11 C 1.53231 * 109.40235 * 183.70612 * 10 8 7 12 12 C 1.51258 * 108.53960 * 305.37117 * 11 10 8 13 13 C 1.37880 * 120.85421 * 231.32837 * 12 11 10 14 14 N 1.31514 * 120.00002 * 180.02562 * 13 12 11 15 15 Si 1.86801 * 119.99848 * 0.02562 * 13 12 11 16 16 H 1.48494 * 109.46995 * 89.99712 * 15 13 12 17 17 H 1.48497 * 109.47098 * 210.00116 * 15 13 12 18 18 H 1.48499 * 109.46710 * 329.99888 * 15 13 12 19 19 C 1.51275 * 118.30008 * 51.35022 * 12 11 10 20 20 C 1.52958 * 109.41518 * 205.00369 * 8 7 6 21 21 N 1.33150 * 119.01098 * 359.97438 * 6 5 4 22 22 C 1.31723 * 120.83184 * 0.02562 * 21 6 5 23 23 C 1.50693 * 119.05415 * 179.97438 * 22 21 6 24 24 N 1.31780 * 121.89323 * 359.97438 * 22 21 6 25 25 H 1.09000 * 109.46985 * 299.99571 * 1 2 3 26 26 H 1.08994 * 109.47019 * 59.99770 * 1 2 3 27 27 H 1.09001 * 109.47037 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46985 * 240.00429 * 2 1 3 29 29 H 1.08996 * 109.47714 * 119.99968 * 2 1 3 30 30 H 1.08001 * 120.85473 * 359.74097 * 5 4 3 31 31 H 0.97005 * 119.99623 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.47894 * 303.68712 * 10 8 7 33 33 H 1.09004 * 109.47962 * 63.72670 * 10 8 7 34 34 H 1.09005 * 109.62405 * 185.65841 * 11 10 8 35 35 H 1.09001 * 109.78397 * 65.18905 * 11 10 8 36 36 H 0.97000 * 119.99609 * 180.02562 * 14 13 12 37 37 H 1.08998 * 109.62647 * 188.93818 * 19 12 11 38 38 H 1.08998 * 109.62446 * 68.36683 * 19 12 11 39 39 H 1.09000 * 109.47892 * 296.27203 * 20 8 7 40 40 H 1.08995 * 109.48422 * 56.31255 * 20 8 7 41 41 H 1.09008 * 109.47155 * 89.99790 * 23 22 21 42 42 H 1.09006 * 109.47132 * 209.99525 * 23 22 21 43 43 H 1.08996 * 109.47287 * 329.99815 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3501 1.5249 -0.0005 5 6 3.8915 2.8043 0.0000 6 6 5.2778 2.9342 0.0053 7 7 5.8667 4.1889 0.0054 8 6 5.0295 5.3911 -0.0005 9 1 4.1352 5.2068 -0.5959 10 6 4.6222 5.7342 1.4333 11 6 3.6718 6.9361 1.4188 12 6 4.3408 8.0692 0.6729 13 6 4.4301 9.3272 1.2302 14 7 5.0150 10.3004 0.5665 15 14 3.7203 9.6492 2.9278 16 1 4.7601 9.3911 3.9561 17 1 3.2750 11.0630 3.0181 18 1 2.5617 8.7495 3.1586 19 6 4.9090 7.7871 -0.7004 20 6 5.8145 6.5543 -0.6091 21 7 6.0292 1.8350 0.0101 22 6 5.4766 0.6393 0.0095 23 6 6.3653 -0.5777 0.0146 24 7 4.1688 0.4768 0.0045 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2535 3.6758 -0.0034 31 1 6.8333 4.2710 0.0095 32 1 4.1190 4.8781 1.8829 33 1 5.5108 5.9803 2.0147 34 1 3.4586 7.2466 2.4417 35 1 2.7426 6.6656 0.9172 36 1 5.0781 11.1853 0.9587 37 1 5.4907 8.6443 -1.0391 38 1 4.0961 7.5932 -1.4002 39 1 6.6749 6.7811 0.0206 40 1 6.1563 6.2797 -1.6069 41 1 6.5755 -0.8698 1.0435 42 1 5.8628 -1.3967 -0.5002 43 1 7.3003 -0.3469 -0.4959 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167844009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:34 Heat of formation + Delta-G solvation = -27.013350 kcal Electronic energy + Delta-G solvation = -23329.808632 eV Core-core repulsion = 19987.774036 eV Total energy + Delta-G solvation = -3342.034596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.16183 -39.90664 -39.15984 -36.43336 -34.16484 -33.87603 -32.39356 -31.92967 -31.43007 -29.27519 -28.80748 -25.02767 -24.29407 -23.78814 -23.27995 -22.51123 -21.20866 -19.49958 -19.19341 -17.96280 -17.42969 -16.94346 -16.44596 -16.27940 -16.07583 -15.92908 -15.31480 -15.09437 -14.65404 -14.46419 -14.32161 -14.03895 -13.99858 -13.70584 -13.40242 -13.33621 -13.12939 -12.81823 -12.73474 -12.57917 -12.55360 -12.15311 -11.97299 -11.86767 -11.68282 -11.46929 -11.34333 -10.91545 -10.60909 -10.54775 -10.38509 -10.15130 -9.11110 -8.18021 -6.12046 0.10586 0.39782 1.37671 1.42072 1.49686 1.75792 2.12968 2.40308 2.83850 3.06933 3.10995 3.49886 3.93876 3.96493 4.08648 4.12673 4.15332 4.30280 4.40558 4.45215 4.56304 4.64975 4.68838 4.80068 4.84634 4.88067 4.91889 4.94044 4.94736 5.03879 5.11413 5.20128 5.21006 5.22380 5.38238 5.55440 5.59835 5.68807 5.74995 5.80962 6.17570 6.27512 6.32942 6.62325 6.94352 7.27002 7.46363 8.92678 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.003953 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.944018 B = 7082.207520 C = 8010.554395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.314 6.314 4 C 0.384 3.616 5 C -0.339 4.339 6 C 0.461 3.539 7 N -0.692 5.692 8 C 0.173 3.827 9 H 0.074 0.926 10 C -0.111 4.111 11 C -0.015 4.015 12 C -0.499 4.499 13 C 0.025 3.975 14 N -0.929 5.929 15 Si 0.937 3.063 16 H -0.275 1.275 17 H -0.293 1.293 18 H -0.255 1.255 19 C 0.010 3.990 20 C -0.101 4.101 21 N -0.610 5.610 22 C 0.380 3.620 23 C -0.077 4.077 24 N -0.620 5.620 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.142 0.858 31 H 0.411 0.589 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.031 0.969 35 H 0.023 0.977 36 H 0.263 0.737 37 H 0.032 0.968 38 H 0.004 0.996 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 -21.779 -0.561 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 O -0.219 6.219 4 C 0.201 3.799 5 C -0.368 4.368 6 C 0.219 3.781 7 N -0.321 5.321 8 C 0.068 3.932 9 H 0.092 0.908 10 C -0.150 4.150 11 C -0.053 4.053 12 C -0.519 4.519 13 C -0.173 4.173 14 N -0.569 5.569 15 Si 0.764 3.236 16 H -0.201 1.201 17 H -0.219 1.219 18 H -0.179 1.179 19 C -0.028 4.028 20 C -0.140 4.140 21 N -0.340 5.340 22 C 0.111 3.889 23 C -0.135 4.135 24 N -0.356 5.356 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.160 0.840 31 H 0.248 0.752 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.023 0.977 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.183 -21.968 -0.559 22.083 hybrid contribution -0.422 1.621 0.769 1.843 sum -2.605 -20.347 0.210 20.514 Atomic orbital electron populations 1.21855 0.91011 1.04442 1.03232 1.22895 0.96235 0.79524 1.02747 1.86239 1.16124 1.32875 1.86664 1.19712 0.84509 0.89412 0.86312 1.21057 0.94953 0.97541 1.23281 1.18327 0.87907 0.86663 0.85234 1.44858 1.09815 1.01043 1.76384 1.20873 0.93279 0.82244 0.96774 0.90849 1.21895 0.99689 0.97579 0.95832 1.19728 0.95233 0.93695 0.96661 1.20606 1.35303 0.93872 1.02084 1.25555 0.95424 0.95766 1.00580 1.69955 1.44942 1.02421 1.39550 0.85859 0.79780 0.76827 0.81157 1.20055 1.21939 1.17933 1.19292 0.94569 0.93739 0.95187 1.21698 0.98578 0.94816 0.98891 1.67902 1.40396 0.98110 1.27595 1.23427 0.87304 0.92824 0.85340 1.20681 0.97317 0.90479 1.05019 1.67998 1.06066 1.33202 1.28377 0.91856 0.91773 0.87677 0.91283 0.91382 0.84043 0.75222 0.93262 0.93081 0.95016 0.95836 0.92781 0.94944 0.97736 0.92942 0.92437 0.88154 0.88313 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.06 1.23 6.06 71.98 0.44 1.67 16 3 O -0.31 -8.90 10.13 -88.44 -0.90 -9.80 16 4 C 0.38 11.92 7.52 84.68 0.64 12.56 16 5 C -0.34 -11.18 8.83 22.67 0.20 -10.98 16 6 C 0.46 14.98 7.68 133.00 1.02 16.00 16 7 N -0.69 -21.81 5.23 -324.36 -1.70 -23.51 16 8 C 0.17 6.12 2.05 44.96 0.09 6.22 16 9 H 0.07 2.68 6.52 -2.38 -0.02 2.66 16 10 C -0.11 -4.23 5.45 30.66 0.17 -4.07 16 11 C -0.02 -0.66 5.59 30.10 0.17 -0.49 16 12 C -0.50 -25.35 5.51 -16.17 -0.09 -25.44 16 13 C 0.03 1.36 5.46 84.66 0.46 1.82 16 14 N -0.93 -53.44 12.73 21.45 0.27 -53.17 16 15 Si 0.94 42.58 27.27 68.60 1.87 44.45 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.26 -10.99 6.46 99.48 0.64 -10.34 16 19 C 0.01 0.49 5.97 30.11 0.18 0.67 16 20 C -0.10 -3.93 5.40 30.66 0.17 -3.77 16 21 N -0.61 -18.58 10.36 -185.62 -1.92 -20.50 16 22 C 0.38 10.21 7.64 138.77 1.06 11.27 16 23 C -0.08 -1.27 10.32 71.23 0.73 -0.54 16 24 N -0.62 -17.66 9.27 -300.84 -2.79 -20.45 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.35 8.12 -2.39 -0.02 1.33 16 29 H 0.07 1.35 8.12 -2.39 -0.02 1.33 16 30 H 0.14 4.78 6.32 -2.91 -0.02 4.76 16 31 H 0.41 11.90 8.72 -92.70 -0.81 11.09 16 32 H 0.05 1.77 7.76 -2.39 -0.02 1.75 16 33 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.03 1.38 4.78 -2.38 -0.01 1.37 16 35 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 37 H 0.03 1.73 7.07 -2.39 -0.02 1.71 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -61.16 344.72 0.96 -60.21 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.14 Total: 19.28 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 5.98 Total: 3.48 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -6.14 Total: -117.62 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.90 Total: -9.80 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.87 Total: 44.45 kcal Total: -61.16 0.96 -60.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.192 kcal (2) G-P(sol) polarization free energy of solvation -61.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds