Wall clock time and date at job start Tue Mar 31 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.36123 * 119.93107 * 240.00015 * 4 2 1 6 6 C 1.36509 * 119.09827 * 179.97438 * 5 4 2 7 7 N 1.40366 * 120.52255 * 180.02562 * 6 5 4 8 8 C 1.46505 * 119.99988 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.41227 * 35.14370 * 8 7 6 10 10 C 1.52959 * 109.41065 * 154.99860 * 8 7 6 11 11 C 1.53230 * 109.40154 * 183.70551 * 10 8 7 12 12 C 1.51266 * 108.53902 * 305.37313 * 11 10 8 13 13 C 1.37871 * 120.85230 * 231.33057 * 12 11 10 14 14 N 1.31513 * 119.99822 * 359.97438 * 13 12 11 15 15 Si 1.86803 * 120.00304 * 179.97438 * 13 12 11 16 16 H 1.48510 * 109.47000 * 89.99750 * 15 13 12 17 17 H 1.48495 * 109.47378 * 209.99384 * 15 13 12 18 18 H 1.48499 * 109.47198 * 329.99902 * 15 13 12 19 19 C 1.51265 * 118.29887 * 51.34461 * 12 11 10 20 20 C 1.52954 * 109.41245 * 275.35269 * 8 7 6 21 21 C 1.40275 * 118.95777 * 0.02562 * 6 5 4 22 22 N 1.31773 * 119.78954 * 359.97438 * 21 6 5 23 23 C 1.33431 * 120.91858 * 359.72398 * 22 21 6 24 24 O 1.22007 * 119.45688 * 180.30012 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08003 * 120.45013 * 359.97438 * 5 4 2 33 33 H 0.97001 * 119.99898 * 359.97438 * 7 6 5 34 34 H 1.09001 * 109.48460 * 303.67976 * 10 8 7 35 35 H 1.09000 * 109.48713 * 63.71280 * 10 8 7 36 36 H 1.09001 * 109.62632 * 65.08522 * 11 10 8 37 37 H 1.08994 * 109.62560 * 185.65989 * 11 10 8 38 38 H 0.97004 * 119.99973 * 180.02562 * 14 13 12 39 39 H 1.09000 * 109.63002 * 68.37062 * 19 12 11 40 40 H 1.09007 * 109.62705 * 188.74981 * 19 12 11 41 41 H 1.09004 * 109.48317 * 296.27133 * 20 8 7 42 42 H 1.08997 * 109.48587 * 56.31583 * 20 8 7 43 43 H 1.07996 * 120.10276 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.8008 -1.7973 -1.0695 6 6 3.2460 -2.4278 -2.1954 7 7 4.0541 -3.5715 -2.0997 8 6 4.5260 -4.2389 -3.3156 9 1 4.7235 -3.4926 -4.0850 10 6 5.8137 -5.0049 -3.0078 11 6 6.3571 -5.6263 -4.2988 12 6 5.2662 -6.4669 -4.9243 13 6 5.5046 -7.7735 -5.2941 14 7 6.6930 -8.3041 -5.1048 15 14 4.1398 -8.7903 -6.0641 16 1 4.1736 -8.6276 -7.5398 17 1 4.3341 -10.2216 -5.7194 18 1 2.8267 -8.3300 -5.5453 19 6 3.9069 -5.8372 -5.1341 20 6 3.4523 -5.2081 -3.8129 21 6 2.8833 -1.9148 -3.4496 22 7 2.1237 -0.8406 -3.5227 23 6 1.6873 -0.2329 -2.4179 24 8 0.9808 0.7568 -2.5166 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.0658 -2.1713 -0.0916 33 1 4.3007 -3.9196 -1.2285 34 1 6.5541 -4.3202 -2.5943 35 1 5.6039 -5.7933 -2.2850 36 1 6.6520 -4.8363 -4.9895 37 1 7.2172 -6.2551 -4.0686 38 1 6.8609 -9.2233 -5.3653 39 1 3.9749 -5.0667 -5.9021 40 1 3.1934 -6.6008 -5.4439 41 1 3.2982 -5.9918 -3.0711 42 1 2.5190 -4.6674 -3.9699 43 1 3.2248 -2.3993 -4.3524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:10 Heat of formation + Delta-G solvation = 6.136505 kcal Electronic energy + Delta-G solvation = -23582.611575 eV Core-core repulsion = 20242.014464 eV Total energy + Delta-G solvation = -3340.597111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71561 -38.38685 -36.70287 -36.42187 -34.23763 -32.54918 -31.83852 -29.90613 -28.88469 -27.47030 -26.59561 -25.26681 -23.85265 -22.15712 -21.58329 -20.90808 -19.70949 -18.16787 -17.37786 -16.85858 -16.23749 -16.03178 -15.49787 -14.91319 -14.56654 -14.47151 -14.07409 -13.70483 -13.54445 -13.33043 -12.97006 -12.70457 -12.57749 -12.37477 -12.21937 -12.00536 -11.76971 -11.61303 -11.48401 -11.12783 -10.91820 -10.77206 -10.74999 -10.64784 -10.28346 -10.10612 -9.77699 -9.42433 -9.39282 -9.05847 -8.72210 -8.54694 -7.03154 -6.18492 -4.10305 0.59102 1.93844 2.46113 3.22325 3.30858 3.31663 3.64421 3.86314 4.26322 4.31281 4.40633 4.55079 4.70679 4.75006 4.86553 5.05221 5.12780 5.37051 5.45524 5.47699 5.52960 5.59386 5.72014 5.84019 5.92140 5.98550 6.05111 6.29024 6.36223 6.44929 6.50735 6.59885 6.71503 6.74592 6.91248 7.02348 7.30742 7.43850 7.57475 7.60940 7.72263 7.86594 7.94200 8.27992 8.29875 8.87700 9.46042 10.90793 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.033206 B = 0.003414 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.028801 B = 8200.459876 C = 8477.488080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 C -0.169 4.169 4 N -0.492 5.492 5 C 0.048 3.952 6 C 0.071 3.929 7 N -0.736 5.736 8 C 0.162 3.838 9 H 0.067 0.933 10 C -0.112 4.112 11 C 0.012 3.988 12 C -0.490 4.490 13 C 0.077 3.923 14 N -0.889 5.889 15 Si 0.886 3.114 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.264 1.264 19 C -0.021 4.021 20 C -0.120 4.120 21 C 0.222 3.778 22 N -0.525 5.525 23 C 0.613 3.387 24 O -0.550 6.550 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.163 0.837 33 H 0.396 0.604 34 H 0.036 0.964 35 H 0.054 0.946 36 H 0.006 0.994 37 H 0.060 0.940 38 H 0.265 0.735 39 H 0.018 0.982 40 H 0.036 0.964 41 H 0.055 0.945 42 H 0.033 0.967 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.240 10.845 11.934 17.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.028 3.972 3 C -0.227 4.227 4 N -0.211 5.211 5 C -0.094 4.094 6 C -0.038 4.038 7 N -0.369 5.369 8 C 0.058 3.942 9 H 0.085 0.915 10 C -0.150 4.150 11 C -0.026 4.026 12 C -0.509 4.509 13 C -0.126 4.126 14 N -0.527 5.527 15 Si 0.715 3.285 16 H -0.203 1.203 17 H -0.217 1.217 18 H -0.189 1.189 19 C -0.059 4.059 20 C -0.159 4.159 21 C 0.036 3.964 22 N -0.255 5.255 23 C 0.315 3.685 24 O -0.428 6.428 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.180 0.820 33 H 0.231 0.769 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.974 11.891 11.008 17.640 hybrid contribution -0.215 -1.422 0.814 1.652 sum -7.189 10.469 11.821 17.350 Atomic orbital electron populations 1.22208 0.93406 1.02729 1.04424 1.21458 0.96007 0.94278 0.85441 1.22195 1.01146 0.94957 1.04390 1.46193 1.41343 1.23679 1.09842 1.21486 0.98072 0.90368 0.99451 1.18051 0.99560 0.93157 0.92983 1.44943 1.55244 1.27339 1.09373 1.21022 0.94968 0.93471 0.84708 0.91496 1.21884 0.93853 0.97627 1.01650 1.19348 0.97430 0.95168 0.90619 1.20019 0.94730 0.96375 1.39791 1.24845 0.95528 0.97131 0.95096 1.69828 1.21261 1.14693 1.46889 0.86692 0.82862 0.79079 0.79910 1.20336 1.21683 1.18940 1.19818 0.96728 0.96801 0.92582 1.22051 0.95673 0.97843 1.00340 1.23788 0.86637 0.88639 0.97331 1.69897 1.16376 1.11405 1.27838 1.18046 0.84158 0.86653 0.79628 1.90896 1.40599 1.26214 1.85102 0.89522 0.91055 0.92522 0.88785 0.92524 0.89594 0.91048 0.81973 0.76906 0.94505 0.92686 0.97532 0.92116 0.92522 0.96317 0.94548 0.92641 0.94855 0.80653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.11 37.16 0.34 -1.31 16 2 C 0.13 1.25 3.22 -67.94 -0.22 1.03 16 3 C -0.17 -1.62 9.12 37.15 0.34 -1.28 16 4 N -0.49 -6.05 2.55 -114.40 -0.29 -6.34 16 5 C 0.05 0.51 10.28 -16.27 -0.17 0.34 16 6 C 0.07 0.87 6.62 -83.81 -0.56 0.32 16 7 N -0.74 -9.13 5.27 -52.27 -0.28 -9.40 16 8 C 0.16 2.54 2.06 -67.97 -0.14 2.40 16 9 H 0.07 1.06 6.54 -51.93 -0.34 0.72 16 10 C -0.11 -1.99 5.40 -26.63 -0.14 -2.14 16 11 C 0.01 0.27 5.97 -27.49 -0.16 0.11 16 12 C -0.49 -11.84 5.51 -98.93 -0.55 -12.39 16 13 C 0.08 1.98 5.46 -17.82 -0.10 1.88 16 14 N -0.89 -24.31 12.73 55.43 0.71 -23.61 16 15 Si 0.89 20.06 27.53 -169.99 -4.68 15.38 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.26 -5.77 6.11 56.52 0.35 -5.42 16 19 C -0.02 -0.45 5.59 -27.49 -0.15 -0.60 16 20 C -0.12 -2.12 5.48 -26.63 -0.15 -2.27 16 21 C 0.22 3.13 10.12 -16.81 -0.17 2.96 16 22 N -0.52 -8.70 10.47 -16.49 -0.17 -8.88 16 23 C 0.61 9.99 7.77 -88.27 -0.69 9.31 16 24 O -0.55 -10.24 13.30 4.91 0.07 -10.18 16 25 H 0.09 1.11 6.11 -51.93 -0.32 0.79 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.62 7.77 -51.93 -0.40 0.21 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.09 6.15 -51.93 -0.32 0.77 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.16 1.13 7.88 -52.48 -0.41 0.72 16 33 H 0.40 4.21 8.62 -40.82 -0.35 3.86 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.06 1.52 7.07 -51.93 -0.37 1.15 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.04 0.78 4.59 -51.93 -0.24 0.55 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.03 0.54 7.81 -51.93 -0.41 0.14 16 43 H 0.18 2.31 6.34 -52.49 -0.33 1.98 16 LS Contribution 334.39 15.07 5.04 5.04 Total: -1.00 -29.65 334.39 -8.61 -38.26 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.49 Total: 1.37 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.64 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.03 Total: -48.23 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.18 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.68 Total: 15.38 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.65 -8.61 -38.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.392 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds