Wall clock time and date at job start Tue Mar 31 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.36123 * 119.93107 * 240.00015 * 4 2 1 6 6 C 1.36509 * 119.09827 * 179.97438 * 5 4 2 7 7 N 1.40366 * 120.52255 * 180.02562 * 6 5 4 8 8 C 1.46505 * 119.99988 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.41227 * 35.14370 * 8 7 6 10 10 C 1.52959 * 109.41065 * 154.99860 * 8 7 6 11 11 C 1.53230 * 109.40154 * 183.70551 * 10 8 7 12 12 C 1.51266 * 108.53902 * 305.37313 * 11 10 8 13 13 C 1.37871 * 120.85230 * 231.33057 * 12 11 10 14 14 N 1.31513 * 119.99822 * 359.97438 * 13 12 11 15 15 Si 1.86803 * 120.00304 * 179.97438 * 13 12 11 16 16 H 1.48510 * 109.47000 * 89.99750 * 15 13 12 17 17 H 1.48495 * 109.47378 * 209.99384 * 15 13 12 18 18 H 1.48499 * 109.47198 * 329.99902 * 15 13 12 19 19 C 1.51265 * 118.29887 * 51.34461 * 12 11 10 20 20 C 1.52954 * 109.41245 * 275.35269 * 8 7 6 21 21 C 1.40275 * 118.95777 * 0.02562 * 6 5 4 22 22 N 1.31773 * 119.78954 * 359.97438 * 21 6 5 23 23 C 1.33431 * 120.91858 * 359.72398 * 22 21 6 24 24 O 1.22007 * 119.45688 * 180.30012 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08003 * 120.45013 * 359.97438 * 5 4 2 33 33 H 0.97001 * 119.99898 * 359.97438 * 7 6 5 34 34 H 1.09001 * 109.48460 * 303.67976 * 10 8 7 35 35 H 1.09000 * 109.48713 * 63.71280 * 10 8 7 36 36 H 1.09001 * 109.62632 * 65.08522 * 11 10 8 37 37 H 1.08994 * 109.62560 * 185.65989 * 11 10 8 38 38 H 0.97004 * 119.99973 * 180.02562 * 14 13 12 39 39 H 1.09000 * 109.63002 * 68.37062 * 19 12 11 40 40 H 1.09007 * 109.62705 * 188.74981 * 19 12 11 41 41 H 1.09004 * 109.48317 * 296.27133 * 20 8 7 42 42 H 1.08997 * 109.48587 * 56.31583 * 20 8 7 43 43 H 1.07996 * 120.10276 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.8008 -1.7973 -1.0695 6 6 3.2460 -2.4278 -2.1954 7 7 4.0541 -3.5715 -2.0997 8 6 4.5260 -4.2389 -3.3156 9 1 4.7235 -3.4926 -4.0850 10 6 5.8137 -5.0049 -3.0078 11 6 6.3571 -5.6263 -4.2988 12 6 5.2662 -6.4669 -4.9243 13 6 5.5046 -7.7735 -5.2941 14 7 6.6930 -8.3041 -5.1048 15 14 4.1398 -8.7903 -6.0641 16 1 4.1736 -8.6276 -7.5398 17 1 4.3341 -10.2216 -5.7194 18 1 2.8267 -8.3300 -5.5453 19 6 3.9069 -5.8372 -5.1341 20 6 3.4523 -5.2081 -3.8129 21 6 2.8833 -1.9148 -3.4496 22 7 2.1237 -0.8406 -3.5227 23 6 1.6873 -0.2329 -2.4179 24 8 0.9808 0.7568 -2.5166 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.0658 -2.1713 -0.0916 33 1 4.3007 -3.9196 -1.2285 34 1 6.5541 -4.3202 -2.5943 35 1 5.6039 -5.7933 -2.2850 36 1 6.6520 -4.8363 -4.9895 37 1 7.2172 -6.2551 -4.0686 38 1 6.8609 -9.2233 -5.3653 39 1 3.9749 -5.0667 -5.9021 40 1 3.1934 -6.6008 -5.4439 41 1 3.2982 -5.9918 -3.0711 42 1 2.5190 -4.6674 -3.9699 43 1 3.2248 -2.3993 -4.3524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167844882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:09 Heat of formation + Delta-G solvation = -13.550535 kcal Electronic energy + Delta-G solvation = -23583.465269 eV Core-core repulsion = 20242.014464 eV Total energy + Delta-G solvation = -3341.450805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.75129 -39.61007 -38.01128 -37.41265 -35.63187 -33.75657 -33.19536 -31.47377 -30.25405 -28.20615 -27.96840 -26.30711 -24.89657 -23.66319 -23.16266 -21.90862 -21.17536 -19.28303 -18.43036 -17.91330 -17.79609 -17.08708 -16.55641 -16.35427 -16.14375 -15.37939 -15.03019 -15.00425 -14.60752 -14.58630 -14.42606 -14.15592 -13.81101 -13.65608 -13.38502 -13.15925 -12.93810 -12.70039 -12.59504 -12.53985 -12.42846 -12.31336 -11.84968 -11.74141 -11.68782 -11.63924 -11.34219 -10.89539 -10.69812 -10.51594 -10.45221 -10.28971 -8.12861 -8.05832 -6.05438 -0.39150 0.88623 1.41260 1.45561 1.50619 1.51618 2.44388 2.58519 2.79583 3.17231 3.30517 3.55491 3.71621 3.86469 3.99823 4.08483 4.16794 4.23430 4.31861 4.59913 4.70545 4.70812 4.74156 4.81776 4.83123 4.84961 5.03354 5.07908 5.09639 5.17558 5.26108 5.28474 5.36112 5.37943 5.45681 5.57064 5.68770 5.71792 5.83096 5.93401 6.33592 6.40340 6.83004 6.98935 7.03043 7.22707 7.52819 8.98037 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.033206 B = 0.003414 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.028801 B = 8200.459876 C = 8477.488080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 C -0.166 4.166 4 N -0.485 5.485 5 C 0.087 3.913 6 C 0.058 3.942 7 N -0.725 5.725 8 C 0.176 3.824 9 H 0.068 0.932 10 C -0.099 4.099 11 C 0.006 3.994 12 C -0.492 4.492 13 C 0.022 3.978 14 N -0.933 5.933 15 Si 0.933 3.067 16 H -0.280 1.280 17 H -0.297 1.297 18 H -0.249 1.249 19 C -0.026 4.026 20 C -0.112 4.112 21 C 0.213 3.787 22 N -0.569 5.569 23 C 0.599 3.401 24 O -0.590 6.590 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.143 0.857 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.215 0.785 33 H 0.410 0.590 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.003 0.997 37 H 0.026 0.974 38 H 0.260 0.740 39 H 0.024 0.976 40 H 0.030 0.970 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.198 11.522 14.970 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.021 3.979 3 C -0.223 4.223 4 N -0.200 5.200 5 C -0.056 4.056 6 C -0.049 4.049 7 N -0.360 5.360 8 C 0.071 3.929 9 H 0.086 0.914 10 C -0.137 4.137 11 C -0.032 4.032 12 C -0.512 4.512 13 C -0.176 4.176 14 N -0.573 5.573 15 Si 0.761 3.239 16 H -0.206 1.206 17 H -0.224 1.224 18 H -0.173 1.173 19 C -0.065 4.065 20 C -0.152 4.152 21 C 0.030 3.970 22 N -0.302 5.302 23 C 0.301 3.699 24 O -0.471 6.471 25 H 0.067 0.933 26 H 0.117 0.883 27 H 0.077 0.923 28 H 0.161 0.839 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.117 0.883 32 H 0.232 0.768 33 H 0.247 0.753 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.021 0.979 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.947 12.576 14.081 20.484 hybrid contribution 0.102 -1.540 -0.051 1.544 sum -7.845 11.036 14.030 19.498 Atomic orbital electron populations 1.22168 0.93707 1.02651 1.03894 1.21890 0.95900 0.94557 0.85567 1.22155 1.01269 0.95046 1.03852 1.46349 1.40203 1.23664 1.09773 1.22227 0.94322 0.87946 1.01056 1.17941 1.00443 0.93526 0.92976 1.44426 1.55634 1.27274 1.08709 1.20591 0.93177 0.92973 0.86128 0.91415 1.21630 0.95408 0.97925 0.98762 1.19323 0.96235 0.94624 0.93014 1.20680 0.96426 0.96325 1.37749 1.25549 0.97032 0.98722 0.96315 1.69965 1.23097 1.14792 1.49467 0.85924 0.81526 0.77503 0.78995 1.20563 1.22352 1.17310 1.19860 0.94889 0.96869 0.94840 1.21921 0.97046 0.98102 0.98102 1.23830 0.86445 0.88239 0.98463 1.69786 1.18448 1.13047 1.28885 1.18133 0.84384 0.86606 0.80743 1.90873 1.42509 1.27923 1.85827 0.93342 0.88300 0.92310 0.83935 0.92173 0.93412 0.88306 0.76824 0.75260 0.92342 0.93162 0.97888 0.95540 0.93037 0.95729 0.95125 0.93238 0.93094 0.80593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.11 71.98 0.66 -2.14 16 2 C 0.12 1.84 3.22 44.99 0.14 1.98 16 3 C -0.17 -2.73 9.12 71.98 0.66 -2.07 16 4 N -0.48 -10.35 2.55 -634.03 -1.61 -11.96 16 5 C 0.09 1.39 10.28 83.62 0.86 2.25 16 6 C 0.06 1.21 6.62 37.87 0.25 1.46 16 7 N -0.72 -14.95 5.27 -319.29 -1.68 -16.63 16 8 C 0.18 5.05 2.06 44.96 0.09 5.15 16 9 H 0.07 1.98 6.54 -2.39 -0.02 1.96 16 10 C -0.10 -3.33 5.40 30.66 0.17 -3.17 16 11 C 0.01 0.27 5.97 30.11 0.18 0.45 16 12 C -0.49 -23.77 5.51 -16.18 -0.09 -23.86 16 13 C 0.02 1.13 5.46 84.65 0.46 1.60 16 14 N -0.93 -52.64 12.73 21.44 0.27 -52.37 16 15 Si 0.93 41.47 27.53 68.60 1.89 43.36 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16 18 H -0.25 -10.30 6.11 99.48 0.61 -9.69 16 19 C -0.03 -1.08 5.59 30.11 0.17 -0.91 16 20 C -0.11 -3.70 5.48 30.66 0.17 -3.53 16 21 C 0.21 5.64 10.12 85.20 0.86 6.51 16 22 N -0.57 -18.70 10.47 -324.93 -3.40 -22.11 16 23 C 0.60 19.16 7.77 179.53 1.40 20.55 16 24 O -0.59 -22.56 13.30 -5.34 -0.07 -22.63 16 25 H 0.05 1.22 6.11 -2.39 -0.01 1.21 16 26 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.14 0.86 7.77 -2.39 -0.02 0.85 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 30 H 0.05 1.19 6.15 -2.39 -0.01 1.18 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.22 1.25 7.88 -2.91 -0.02 1.23 16 33 H 0.41 6.56 8.62 -92.71 -0.80 5.76 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.03 1.35 7.07 -2.39 -0.02 1.33 16 38 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 39 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.03 1.27 4.59 -2.38 -0.01 1.26 16 41 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.05 1.51 7.81 -2.39 -0.02 1.49 16 43 H 0.18 4.44 6.34 -2.91 -0.02 4.42 16 Total: -1.00 -69.41 334.39 1.49 -67.93 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.13 Total: 10.14 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 5.97 Total: 4.27 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -6.43 Total: -103.06 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.07 Total: -22.63 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.89 Total: 43.36 kcal Total: -69.41 1.49 -67.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.376 kcal (2) G-P(sol) polarization free energy of solvation -69.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds