Wall clock time and date at job start Tue Mar 31 2020 07:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42906 * 109.46748 * 119.99818 * 2 1 3 5 5 C 1.35795 * 116.99654 * 150.00000 * 4 2 1 6 6 C 1.38846 * 119.97819 * 179.72707 * 5 4 2 7 7 N 1.32139 * 120.02557 * 179.75704 * 6 5 4 8 8 C 1.32696 * 119.97493 * 0.51209 * 7 6 5 9 9 N 1.39286 * 120.02297 * 179.75429 * 8 7 6 10 10 C 1.46497 * 120.00003 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.41223 * 35.15014 * 10 9 8 12 12 C 1.52957 * 109.41049 * 155.00178 * 10 9 8 13 13 C 1.53233 * 109.40463 * 183.70554 * 12 10 9 14 14 C 1.51269 * 108.53866 * 305.37649 * 13 12 10 15 15 C 1.37873 * 120.85123 * 231.32454 * 14 13 12 16 16 N 1.31521 * 119.99818 * 0.02562 * 15 14 13 17 17 Si 1.86807 * 120.00100 * 179.97438 * 15 14 13 18 18 H 1.48493 * 109.46852 * 60.00141 * 17 15 14 19 19 H 1.48504 * 109.46932 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46931 * 300.00000 * 17 15 14 21 21 C 1.51268 * 118.30104 * 51.34215 * 14 13 12 22 22 C 1.52955 * 109.41679 * 275.35659 * 10 9 8 23 23 C 1.39073 * 119.95343 * 359.74301 * 8 7 6 24 24 N 1.32088 * 119.97952 * 359.97438 * 23 8 7 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 29 29 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 32 32 H 1.08006 * 119.98974 * 0.02562 * 6 5 4 33 33 H 0.96995 * 119.99858 * 359.97438 * 9 8 7 34 34 H 1.09000 * 109.48613 * 303.68826 * 12 10 9 35 35 H 1.09003 * 109.48392 * 63.71895 * 12 10 9 36 36 H 1.09000 * 109.62380 * 65.08999 * 13 12 10 37 37 H 1.09003 * 109.63120 * 185.66170 * 13 12 10 38 38 H 0.97005 * 119.99325 * 180.02562 * 16 15 14 39 39 H 1.09007 * 109.62118 * 68.36962 * 21 14 13 40 40 H 1.08992 * 109.62963 * 188.74838 * 21 14 13 41 41 H 1.08994 * 109.48437 * 296.27847 * 22 10 9 42 42 H 1.09004 * 109.48157 * 56.32098 * 22 10 9 43 43 H 1.08003 * 120.00448 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.1997 -1.3136 1.0653 6 6 3.7235 -1.9833 2.1630 7 7 4.8824 -2.6103 2.0638 8 6 5.5505 -2.5913 0.9175 9 7 6.7747 -3.2476 0.8133 10 6 7.5116 -3.2267 -0.4526 11 1 7.3639 -2.2639 -0.9419 12 6 9.0018 -3.4335 -0.1768 13 6 9.7832 -3.3194 -1.4900 14 6 9.1930 -4.2920 -2.4869 15 6 9.9965 -5.1826 -3.1667 16 7 11.2940 -5.1940 -2.9516 17 14 9.2423 -6.3738 -4.3922 18 1 8.5612 -5.6110 -5.4689 19 1 10.3111 -7.2186 -4.9833 20 1 8.2551 -7.2391 -3.6980 21 6 7.6985 -4.2623 -2.7192 22 6 6.9927 -4.3422 -1.3615 23 6 5.0276 -1.9157 -0.1799 24 7 3.8663 -1.2942 -0.0804 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1815 -1.9954 3.0971 33 1 7.1392 -3.7184 1.5790 34 1 9.3513 -2.6729 0.5214 35 1 9.1579 -4.4223 0.2545 36 1 9.7020 -2.3038 -1.8773 37 1 10.8308 -3.5649 -1.3153 38 1 11.8593 -5.8204 -3.4302 39 1 7.4244 -3.3339 -3.2204 40 1 7.4071 -5.1116 -3.3370 41 1 7.1963 -5.3095 -0.9023 42 1 5.9182 -4.2256 -1.5030 43 1 5.5709 -1.8993 -1.1132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:20 Heat of formation + Delta-G solvation = -5.146297 kcal Electronic energy + Delta-G solvation = -23196.736751 eV Core-core repulsion = 19855.650382 eV Total energy + Delta-G solvation = -3341.086370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.10842 -38.87207 -37.54138 -34.65260 -33.72197 -33.18093 -31.74157 -29.92020 -28.88674 -27.45459 -26.87923 -24.93134 -23.42280 -21.79594 -21.59355 -21.28282 -19.60975 -18.44447 -17.78514 -16.95865 -16.14455 -15.84914 -15.26421 -14.73277 -14.56595 -14.48852 -14.36602 -13.90563 -13.33998 -13.27576 -12.84788 -12.70197 -12.50000 -12.42869 -12.19284 -12.14002 -11.72816 -11.56195 -11.44078 -11.11817 -10.93445 -10.83249 -10.74356 -10.70050 -10.31119 -10.16383 -9.93443 -9.49194 -9.11275 -9.05006 -8.76519 -8.55430 -7.26989 -6.18603 -4.10564 1.07820 1.45769 2.95371 3.23758 3.31419 3.32103 3.40764 3.91551 4.28406 4.31776 4.58660 4.69112 4.73818 4.82658 5.08619 5.09721 5.31804 5.35771 5.43807 5.52007 5.55916 5.63730 5.66201 5.70836 5.91020 5.96523 6.00967 6.09909 6.34624 6.43292 6.59467 6.65246 6.72548 6.88493 6.93875 7.14189 7.22022 7.28752 7.53760 7.60022 7.63599 7.69578 7.79950 8.15498 8.27674 8.86999 9.45817 10.90872 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025330 B = 0.003366 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.133099 B = 8316.413426 C = 8817.789991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.082 3.918 3 C -0.168 4.168 4 O -0.303 6.303 5 C 0.192 3.808 6 C 0.093 3.907 7 N -0.480 5.480 8 C 0.333 3.667 9 N -0.707 5.707 10 C 0.161 3.839 11 H 0.072 0.928 12 C -0.113 4.113 13 C 0.014 3.986 14 C -0.494 4.494 15 C 0.078 3.922 16 N -0.888 5.888 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.292 1.292 20 H -0.274 1.274 21 C -0.009 4.009 22 C -0.121 4.121 23 C 0.029 3.971 24 N -0.457 5.457 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.169 0.831 33 H 0.402 0.598 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.007 0.993 37 H 0.062 0.938 38 H 0.266 0.734 39 H 0.020 0.980 40 H 0.027 0.973 41 H 0.057 0.943 42 H 0.035 0.965 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.865 8.265 6.655 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.025 3.975 3 C -0.225 4.225 4 O -0.211 6.211 5 C 0.010 3.990 6 C -0.070 4.070 7 N -0.203 5.203 8 C 0.094 3.906 9 N -0.339 5.339 10 C 0.057 3.943 11 H 0.090 0.910 12 C -0.152 4.152 13 C -0.024 4.024 14 C -0.513 4.513 15 C -0.125 4.125 16 N -0.525 5.525 17 Si 0.719 3.281 18 H -0.199 1.199 19 H -0.218 1.218 20 H -0.200 1.200 21 C -0.047 4.047 22 C -0.160 4.160 23 C -0.139 4.139 24 N -0.184 5.184 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.186 0.814 33 H 0.237 0.763 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.025 0.975 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.790 8.233 6.630 19.002 hybrid contribution -0.165 -0.893 -0.570 1.072 sum -15.955 7.340 6.061 18.578 Atomic orbital electron populations 1.21890 0.93157 1.02856 1.02732 1.22255 0.94192 0.92658 0.88387 1.22208 1.02195 0.95838 1.02281 1.86260 1.31505 1.65279 1.38026 1.20430 0.88997 0.97770 0.91791 1.22428 0.91864 0.94685 0.98028 1.68040 1.07424 1.20606 1.24236 1.19348 0.88723 0.92168 0.90321 1.45101 1.17502 1.55726 1.15548 1.21161 0.92275 0.99064 0.81790 0.90989 1.21921 0.92283 1.00109 1.00846 1.19344 0.97706 0.95291 0.90083 1.20000 0.90082 1.18278 1.22903 1.24837 0.94656 0.96680 0.96322 1.69817 1.03826 1.37129 1.41730 0.86660 0.78576 0.81180 0.81696 1.19929 1.21813 1.19980 1.19603 0.96070 0.96934 0.92084 1.22056 0.97244 0.98238 0.98460 1.22921 0.92762 0.98469 0.99779 1.67786 1.07787 1.18436 1.24374 0.90705 0.91913 0.91780 0.89570 0.92035 0.91320 0.92162 0.81362 0.76266 0.94318 0.92450 0.97483 0.91940 0.92404 0.96169 0.95452 0.92424 0.94642 0.81192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.56 37.16 0.36 -0.85 16 2 C 0.08 0.88 3.12 -26.73 -0.08 0.80 16 3 C -0.17 -1.62 9.53 37.16 0.35 -1.27 16 4 O -0.30 -3.89 9.78 -19.10 -0.19 -4.08 16 5 C 0.19 2.74 7.45 -17.01 -0.13 2.61 16 6 C 0.09 1.26 11.16 -17.19 -0.19 1.07 16 7 N -0.48 -7.34 10.52 -12.08 -0.13 -7.47 16 8 C 0.33 5.25 7.65 -154.51 -1.18 4.06 16 9 N -0.71 -11.05 5.25 -53.84 -0.28 -11.33 16 10 C 0.16 2.78 2.04 -67.98 -0.14 2.64 16 11 H 0.07 1.24 6.48 -51.93 -0.34 0.90 16 12 C -0.11 -2.16 5.40 -26.63 -0.14 -2.31 16 13 C 0.01 0.32 5.97 -27.48 -0.16 0.15 16 14 C -0.49 -12.24 5.51 -98.92 -0.55 -12.78 16 15 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 16 N -0.89 -24.63 12.73 55.43 0.71 -23.92 16 17 Si 0.89 20.60 26.80 -169.99 -4.56 16.05 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 C -0.01 -0.19 5.59 -27.48 -0.15 -0.34 16 22 C -0.12 -2.28 5.42 -26.63 -0.14 -2.42 16 23 C 0.03 0.44 9.97 -17.13 -0.17 0.27 16 24 N -0.46 -6.91 8.81 -12.97 -0.11 -7.02 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 1.03 7.00 -51.93 -0.36 0.67 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.17 1.78 8.06 -52.48 -0.42 1.35 16 33 H 0.40 5.95 8.73 -40.82 -0.36 5.59 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 37 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.03 0.60 5.17 -51.93 -0.27 0.33 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.03 0.62 7.69 -51.93 -0.40 0.22 16 43 H 0.17 2.54 6.12 -52.48 -0.32 2.21 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -27.28 343.24 -8.44 -35.72 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.62 Total: 3.30 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.43 Total: -6.41 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.18 Total: -49.74 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.19 Total: -4.08 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.56 Total: 16.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.28 -8.44 -35.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.572 kcal (2) G-P(sol) polarization free energy of solvation -27.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds