Wall clock time and date at job start Tue Mar 31 2020 07:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42906 * 109.46748 * 119.99818 * 2 1 3 5 5 C 1.35795 * 116.99654 * 150.00000 * 4 2 1 6 6 C 1.38846 * 119.97819 * 179.72707 * 5 4 2 7 7 N 1.32139 * 120.02557 * 179.75704 * 6 5 4 8 8 C 1.32696 * 119.97493 * 0.51209 * 7 6 5 9 9 N 1.39286 * 120.02297 * 179.75429 * 8 7 6 10 10 C 1.46497 * 120.00003 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.41223 * 35.15014 * 10 9 8 12 12 C 1.52957 * 109.41049 * 155.00178 * 10 9 8 13 13 C 1.53233 * 109.40463 * 183.70554 * 12 10 9 14 14 C 1.51269 * 108.53866 * 305.37649 * 13 12 10 15 15 C 1.37873 * 120.85123 * 231.32454 * 14 13 12 16 16 N 1.31521 * 119.99818 * 0.02562 * 15 14 13 17 17 Si 1.86807 * 120.00100 * 179.97438 * 15 14 13 18 18 H 1.48493 * 109.46852 * 60.00141 * 17 15 14 19 19 H 1.48504 * 109.46932 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46931 * 300.00000 * 17 15 14 21 21 C 1.51268 * 118.30104 * 51.34215 * 14 13 12 22 22 C 1.52955 * 109.41679 * 275.35659 * 10 9 8 23 23 C 1.39073 * 119.95343 * 359.74301 * 8 7 6 24 24 N 1.32088 * 119.97952 * 359.97438 * 23 8 7 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 29 29 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 32 32 H 1.08006 * 119.98974 * 0.02562 * 6 5 4 33 33 H 0.96995 * 119.99858 * 359.97438 * 9 8 7 34 34 H 1.09000 * 109.48613 * 303.68826 * 12 10 9 35 35 H 1.09003 * 109.48392 * 63.71895 * 12 10 9 36 36 H 1.09000 * 109.62380 * 65.08999 * 13 12 10 37 37 H 1.09003 * 109.63120 * 185.66170 * 13 12 10 38 38 H 0.97005 * 119.99325 * 180.02562 * 16 15 14 39 39 H 1.09007 * 109.62118 * 68.36962 * 21 14 13 40 40 H 1.08992 * 109.62963 * 188.74838 * 21 14 13 41 41 H 1.08994 * 109.48437 * 296.27847 * 22 10 9 42 42 H 1.09004 * 109.48157 * 56.32098 * 22 10 9 43 43 H 1.08003 * 120.00448 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.1997 -1.3136 1.0653 6 6 3.7235 -1.9833 2.1630 7 7 4.8824 -2.6103 2.0638 8 6 5.5505 -2.5913 0.9175 9 7 6.7747 -3.2476 0.8133 10 6 7.5116 -3.2267 -0.4526 11 1 7.3639 -2.2639 -0.9419 12 6 9.0018 -3.4335 -0.1768 13 6 9.7832 -3.3194 -1.4900 14 6 9.1930 -4.2920 -2.4869 15 6 9.9965 -5.1826 -3.1667 16 7 11.2940 -5.1940 -2.9516 17 14 9.2423 -6.3738 -4.3922 18 1 8.5612 -5.6110 -5.4689 19 1 10.3111 -7.2186 -4.9833 20 1 8.2551 -7.2391 -3.6980 21 6 7.6985 -4.2623 -2.7192 22 6 6.9927 -4.3422 -1.3615 23 6 5.0276 -1.9157 -0.1799 24 7 3.8663 -1.2942 -0.0804 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1815 -1.9954 3.0971 33 1 7.1392 -3.7184 1.5790 34 1 9.3513 -2.6729 0.5214 35 1 9.1579 -4.4223 0.2545 36 1 9.7020 -2.3038 -1.8773 37 1 10.8308 -3.5649 -1.3153 38 1 11.8593 -5.8204 -3.4302 39 1 7.4244 -3.3339 -3.2204 40 1 7.4071 -5.1116 -3.3370 41 1 7.1963 -5.3095 -0.9023 42 1 5.9182 -4.2256 -1.5030 43 1 5.5709 -1.8993 -1.1132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:19 Heat of formation + Delta-G solvation = -22.052242 kcal Electronic energy + Delta-G solvation = -23197.469848 eV Core-core repulsion = 19855.650382 eV Total energy + Delta-G solvation = -3341.819466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.22676 -39.96011 -38.95337 -36.06929 -34.96764 -34.13155 -33.38971 -31.56728 -30.24511 -28.46118 -28.09401 -26.06633 -24.73737 -23.36255 -23.18624 -22.25856 -21.17758 -19.44343 -19.01644 -18.17246 -17.87277 -16.88124 -16.44196 -16.39235 -15.83671 -15.61809 -15.50181 -15.05416 -14.78884 -14.56616 -14.18342 -14.17789 -13.90621 -13.48244 -13.32867 -13.17005 -13.00639 -12.77281 -12.70604 -12.64436 -12.50771 -12.32007 -11.98215 -11.86917 -11.72669 -11.66636 -11.54579 -10.97898 -10.79241 -10.54300 -10.42964 -10.21198 -8.45508 -8.16751 -6.10286 -0.03823 0.30686 1.40145 1.42123 1.48869 1.90837 2.24171 2.41030 2.78097 3.12306 3.21432 3.50864 3.56561 3.95557 3.99970 4.07193 4.16941 4.25797 4.30796 4.42924 4.60822 4.63332 4.72147 4.73868 4.87181 4.89731 4.91314 4.97258 5.02678 5.07615 5.18980 5.23395 5.24431 5.27970 5.29325 5.59370 5.64187 5.76414 5.84233 5.86436 6.19963 6.34355 6.47094 6.58549 6.96614 6.98586 7.47987 8.93999 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025330 B = 0.003366 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.133099 B = 8316.413426 C = 8817.789991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 C -0.163 4.163 4 O -0.305 6.305 5 C 0.192 3.808 6 C 0.096 3.904 7 N -0.487 5.487 8 C 0.323 3.677 9 N -0.705 5.705 10 C 0.176 3.824 11 H 0.078 0.922 12 C -0.102 4.102 13 C 0.010 3.990 14 C -0.499 4.499 15 C 0.024 3.976 16 N -0.930 5.930 17 Si 0.939 3.061 18 H -0.266 1.266 19 H -0.297 1.297 20 H -0.268 1.268 21 C -0.012 4.012 22 C -0.113 4.113 23 C 0.018 3.982 24 N -0.466 5.466 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.200 0.800 33 H 0.406 0.594 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.007 0.993 37 H 0.029 0.971 38 H 0.262 0.738 39 H 0.030 0.970 40 H 0.025 0.975 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.678 9.092 7.325 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.017 3.983 3 C -0.221 4.221 4 O -0.213 6.213 5 C 0.009 3.991 6 C -0.067 4.067 7 N -0.211 5.211 8 C 0.085 3.915 9 N -0.337 5.337 10 C 0.071 3.929 11 H 0.096 0.904 12 C -0.140 4.140 13 C -0.028 4.028 14 C -0.518 4.518 15 C -0.174 4.174 16 N -0.570 5.570 17 Si 0.766 3.234 18 H -0.191 1.191 19 H -0.224 1.224 20 H -0.193 1.193 21 C -0.050 4.050 22 C -0.152 4.152 23 C -0.148 4.148 24 N -0.193 5.193 25 H 0.113 0.887 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.217 0.783 33 H 0.242 0.758 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.026 0.974 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -18.633 9.069 7.303 21.972 hybrid contribution 0.594 -1.023 -0.722 1.386 sum -18.039 8.046 6.580 20.819 Atomic orbital electron populations 1.21892 0.90913 1.03164 1.04096 1.22509 0.95905 0.92768 0.87102 1.22181 1.00797 0.95456 1.03638 1.86269 1.30755 1.65183 1.39085 1.20667 0.89282 0.97466 0.91695 1.22934 0.91282 0.93507 0.99010 1.68058 1.08014 1.20902 1.24086 1.19359 0.88756 0.92626 0.90741 1.44764 1.17700 1.56327 1.14904 1.20804 0.90960 0.98727 0.82380 0.90396 1.21688 0.93244 1.00293 0.98794 1.19298 0.96522 0.94892 0.92113 1.20642 0.91836 1.17386 1.21962 1.25549 0.94953 0.98676 0.98219 1.69954 1.05081 1.38468 1.43497 0.85871 0.77792 0.79611 0.80163 1.19099 1.22383 1.19300 1.19638 0.94237 0.97310 0.93856 1.21920 0.97995 0.98311 0.96962 1.22953 0.93076 0.98902 0.99892 1.67795 1.07827 1.18632 1.25046 0.88736 0.92148 0.91018 0.90999 0.94105 0.89441 0.91364 0.78339 0.75752 0.92487 0.93305 0.97428 0.95195 0.92851 0.95145 0.95668 0.93458 0.92858 0.81005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.56 71.98 0.69 -1.25 16 2 C 0.07 1.43 3.12 30.60 0.10 1.53 16 3 C -0.16 -2.83 9.53 71.98 0.69 -2.14 16 4 O -0.31 -7.19 9.78 -91.25 -0.89 -8.08 16 5 C 0.19 5.07 7.45 84.73 0.63 5.70 16 6 C 0.10 2.37 11.16 84.79 0.95 3.32 16 7 N -0.49 -13.85 10.52 -192.12 -2.02 -15.87 16 8 C 0.32 9.55 7.65 132.86 1.02 10.57 16 9 N -0.70 -20.74 5.25 -324.26 -1.70 -22.45 16 10 C 0.18 5.81 2.04 44.96 0.09 5.90 16 11 H 0.08 2.53 6.48 -2.39 -0.02 2.52 16 12 C -0.10 -3.82 5.40 30.66 0.17 -3.65 16 13 C 0.01 0.46 5.97 30.11 0.18 0.64 16 14 C -0.50 -24.78 5.51 -16.17 -0.09 -24.87 16 15 C 0.02 1.30 5.46 84.65 0.46 1.76 16 16 N -0.93 -53.22 12.73 21.45 0.27 -52.95 16 17 Si 0.94 42.45 26.80 68.60 1.84 44.29 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 21 C -0.01 -0.52 5.59 30.11 0.17 -0.35 16 22 C -0.11 -4.06 5.42 30.66 0.17 -3.90 16 23 C 0.02 0.54 9.97 84.85 0.85 1.38 16 24 N -0.47 -13.35 8.81 -307.59 -2.71 -16.06 16 25 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.62 7.00 -2.39 -0.02 1.60 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.20 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.41 11.33 8.73 -92.71 -0.81 10.52 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.03 1.57 7.07 -2.39 -0.02 1.55 16 38 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 39 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.02 1.06 5.17 -2.39 -0.01 1.04 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 1.74 7.69 -2.38 -0.02 1.72 16 43 H 0.17 4.84 6.12 -2.91 -0.02 4.82 16 Total: -1.00 -58.58 343.24 1.05 -57.53 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.21 Total: 18.94 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 6.05 Total: -5.35 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -6.16 Total: -107.33 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.89 Total: -8.08 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.84 Total: 44.29 kcal Total: -58.58 1.05 -57.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.477 kcal (2) G-P(sol) polarization free energy of solvation -58.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds