Wall clock time and date at job start Tue Mar 31 2020 07:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35608 * 117.00078 * 2 1 4 4 C 1.39159 * 120.50381 * 0.02562 * 3 2 1 5 5 C 1.38307 * 118.62713 * 179.97438 * 4 3 2 6 6 C 1.39933 * 119.59934 * 0.02562 * 5 4 3 7 7 N 1.38905 * 119.49708 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00279 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47373 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47246 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.91086 * 53.89263 * 10 9 8 12 12 C 1.53996 * 109.91946 * 175.00156 * 10 9 8 13 13 C 1.54598 * 105.13914 * 120.57510 * 12 10 9 14 14 C 1.54937 * 102.92385 * 21.95665 * 13 12 10 15 15 N 1.47907 * 109.91296 * 292.58873 * 10 9 8 16 16 N 1.31866 * 121.00919 * 359.74020 * 6 5 4 17 17 C 1.33826 * 121.46930 * 0.52786 * 16 6 5 18 18 C 1.40915 * 119.84923 * 179.75630 * 17 16 6 19 19 H 1.08003 * 119.99559 * 188.76135 * 18 17 16 20 20 C 1.40022 * 120.00174 * 8.75345 * 18 17 16 21 21 N 1.30780 * 119.99912 * 195.95479 * 20 18 17 22 22 Si 1.86805 * 119.99877 * 15.95101 * 20 18 17 23 23 H 1.48491 * 109.47438 * 269.99950 * 22 20 18 24 24 H 1.48501 * 109.46740 * 149.99895 * 22 20 18 25 25 H 1.48497 * 109.46688 * 30.00315 * 22 20 18 26 26 H 1.09008 * 109.47423 * 60.00127 * 1 2 3 27 27 H 1.09004 * 109.47335 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47515 * 300.00265 * 1 2 3 29 29 H 1.07994 * 120.68472 * 0.02562 * 4 3 2 30 30 H 1.08008 * 120.20228 * 179.97438 * 5 4 3 31 31 H 0.97006 * 120.00154 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47019 * 299.99940 * 8 7 6 33 33 H 1.09003 * 109.47065 * 59.99954 * 8 7 6 34 34 H 1.09000 * 109.47056 * 299.99988 * 9 8 7 35 35 H 1.08998 * 109.47450 * 60.00178 * 9 8 7 36 36 H 1.09000 * 110.30920 * 239.49514 * 12 10 9 37 37 H 1.08999 * 110.30482 * 1.56307 * 12 10 9 38 38 H 1.09001 * 110.71897 * 140.31732 * 13 12 10 39 39 H 1.08999 * 110.72320 * 263.41885 * 13 12 10 40 40 H 1.09000 * 110.66357 * 81.01878 * 14 13 12 41 41 H 1.08995 * 110.66492 * 204.15194 * 14 13 12 42 42 H 1.00897 * 111.00476 * 335.82853 * 15 10 9 43 43 H 0.96998 * 120.00595 * 354.79549 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2970 2.3820 0.0005 5 6 1.9650 3.5931 0.0011 6 6 3.3642 3.6107 0.0005 7 7 4.0328 4.8282 0.0005 8 6 3.2734 6.0810 0.0016 9 6 4.2426 7.2649 0.0020 10 6 3.4494 8.5733 0.0038 11 1 2.7412 8.5769 0.8323 12 6 4.4110 9.7695 0.1304 13 6 4.1675 10.6192 -1.1381 14 6 2.7481 10.1829 -1.5802 15 7 2.7305 8.7284 -1.2794 16 7 4.0577 2.4892 0.0046 17 6 3.4544 1.2946 -0.0011 18 6 4.2291 0.1176 -0.0016 19 1 3.7543 -0.8413 -0.1486 20 6 5.6144 0.1911 0.1882 21 7 6.3713 -0.8310 -0.1163 22 14 6.3814 1.7492 0.8764 23 1 6.7362 2.6613 -0.2403 24 1 7.6066 1.4020 1.6404 25 1 5.4111 2.4226 1.7765 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2176 2.3479 0.0014 30 1 1.4100 4.5197 0.0011 31 1 5.0027 4.8490 0.0005 32 1 2.6450 6.1258 -0.8879 33 1 2.6464 6.1250 0.8921 34 1 4.8707 7.2200 0.8917 35 1 4.8699 7.2212 -0.8883 36 1 4.1787 10.3487 1.0241 37 1 5.4438 9.4228 0.1628 38 1 4.1875 11.6826 -0.8996 39 1 4.9034 10.3839 -1.9070 40 1 1.9871 10.7049 -1.0002 41 1 2.6071 10.3569 -2.6469 42 1 3.1816 8.2021 -2.0126 43 1 5.9677 -1.6654 -0.4020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169563121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:17 Heat of formation + Delta-G solvation = -18.700413 kcal Electronic energy + Delta-G solvation = -23012.736058 eV Core-core repulsion = 19671.061938 eV Total energy + Delta-G solvation = -3341.674120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.31103 -38.98505 -37.19916 -35.30752 -33.59183 -31.73977 -30.82474 -30.17956 -28.97633 -26.93959 -26.19223 -24.89536 -22.87277 -21.75751 -21.46538 -20.49182 -20.15258 -18.24453 -16.90623 -16.69728 -16.06645 -15.68615 -15.40501 -15.22195 -14.74895 -14.32050 -13.97917 -13.81035 -13.67115 -13.46095 -13.08232 -12.71437 -12.36168 -12.10242 -12.04942 -11.95470 -11.78351 -11.59857 -11.52377 -11.21399 -10.91606 -10.86788 -10.74907 -10.61547 -10.46201 -10.02786 -9.59716 -9.08263 -8.84011 -8.59769 -8.42423 -7.79834 -7.21576 -6.51057 -4.53576 2.66470 2.88410 3.55954 3.68292 3.83464 3.96944 4.04414 4.39950 4.45643 4.51333 4.56202 4.69012 4.75406 4.94257 5.06812 5.12341 5.24796 5.32178 5.54841 5.59139 5.60141 5.67425 5.68127 5.71407 5.77255 5.80243 5.84990 5.94052 5.99369 6.12810 6.17646 6.24707 6.50554 6.56032 6.57991 7.10580 7.14623 7.27069 7.46637 7.59490 7.92749 8.09821 8.21686 8.47882 8.59408 8.93175 9.66604 10.05424 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.004004 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.446167 B = 6991.841478 C = 8379.011577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.311 6.311 3 C -0.068 4.068 4 C -0.103 4.103 5 C -0.341 4.341 6 C 0.418 3.582 7 N -0.744 5.744 8 C 0.144 3.856 9 C -0.135 4.135 10 C 0.077 3.923 11 H 0.088 0.912 12 C -0.149 4.149 13 C -0.159 4.159 14 C 0.042 3.958 15 N -0.669 5.669 16 N -0.602 5.602 17 C 0.283 3.717 18 C -0.460 4.460 19 H 0.090 0.910 20 C 0.048 3.952 21 N -0.802 5.802 22 Si 1.146 2.854 23 H -0.288 1.288 24 H -0.330 1.330 25 H -0.278 1.278 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.392 0.608 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.340 0.660 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.095 17.874 -0.579 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.224 6.224 3 C -0.115 4.115 4 C -0.127 4.127 5 C -0.367 4.367 6 C 0.182 3.818 7 N -0.380 5.380 8 C 0.019 3.981 9 C -0.174 4.174 10 C -0.033 4.033 11 H 0.106 0.894 12 C -0.188 4.188 13 C -0.198 4.198 14 C -0.088 4.088 15 N -0.298 5.298 16 N -0.331 5.331 17 C 0.158 3.842 18 C -0.492 4.492 19 H 0.108 0.892 20 C -0.174 4.174 21 N -0.424 5.424 22 Si 0.979 3.021 23 H -0.215 1.215 24 H -0.263 1.263 25 H -0.206 1.206 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.226 0.774 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.157 0.843 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.620 18.316 -0.008 18.670 hybrid contribution -1.477 -0.496 -0.764 1.735 sum -5.097 17.820 -0.772 18.551 Atomic orbital electron populations 1.22721 0.81767 1.01776 0.99793 1.85926 1.18141 1.27570 1.90758 1.19694 0.92927 0.83381 1.15546 1.20763 0.97642 0.92177 1.02150 1.20225 0.92066 0.96801 1.27658 1.18018 0.88261 0.84988 0.90488 1.44206 1.07795 1.02009 1.84036 1.21075 0.93746 0.81877 1.01423 1.22114 0.98418 0.93781 1.03054 1.22329 0.93922 0.93236 0.93835 0.89372 1.22886 1.00457 0.97079 0.98385 1.23116 0.98539 1.00340 0.97791 1.23115 0.95711 0.89135 1.00854 1.62843 1.54633 1.07548 1.04762 1.66367 1.36876 0.96878 1.33011 1.17657 0.86569 0.90119 0.89850 1.20623 0.94094 0.93694 1.40803 0.89231 1.27724 0.94361 1.04607 0.90664 1.70620 1.40044 1.03768 1.27977 0.82089 0.71662 0.71495 0.76834 1.21530 1.26325 1.20557 0.94331 0.89992 0.94272 0.87712 0.87995 0.77370 0.91980 0.92796 0.90611 0.91342 0.91216 0.91135 0.91090 0.91577 0.90282 0.90863 0.84335 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.83 101.05 0.99 1.61 16 2 O -0.31 -7.32 9.63 -18.52 -0.18 -7.50 16 3 C -0.07 -1.71 6.74 -38.10 -0.26 -1.97 16 4 C -0.10 -2.31 9.12 -39.21 -0.36 -2.66 16 5 C -0.34 -7.48 9.33 -38.92 -0.36 -7.84 16 6 C 0.42 9.61 7.65 -155.27 -1.19 8.43 16 7 N -0.74 -13.76 5.72 -60.36 -0.35 -14.11 16 8 C 0.14 2.04 4.79 -4.05 -0.02 2.02 16 9 C -0.14 -1.44 4.46 -26.73 -0.12 -1.56 16 10 C 0.08 0.73 3.38 -66.64 -0.23 0.50 16 11 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 12 C -0.15 -1.18 6.57 -25.37 -0.17 -1.35 16 13 C -0.16 -1.14 7.06 -24.87 -0.18 -1.32 16 14 C 0.04 0.33 7.55 -1.90 -0.01 0.31 16 15 N -0.67 -6.48 6.99 -103.13 -0.72 -7.20 16 16 N -0.60 -15.72 5.05 -10.20 -0.05 -15.77 16 17 C 0.28 7.79 6.28 -84.85 -0.53 7.26 16 18 C -0.46 -13.11 9.29 -37.90 -0.35 -13.46 16 19 H 0.09 2.62 7.56 -52.48 -0.40 2.23 16 20 C 0.05 1.35 5.51 -17.33 -0.10 1.25 16 21 N -0.80 -22.32 13.65 55.55 0.76 -21.56 16 22 Si 1.15 28.44 25.93 -169.99 -4.41 24.03 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.33 -8.03 7.11 56.52 0.40 -7.63 16 25 H -0.28 -7.02 6.54 56.52 0.37 -6.65 16 26 H 0.04 0.61 7.69 -51.92 -0.40 0.22 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 29 H 0.10 2.02 6.43 -52.49 -0.34 1.68 16 30 H 0.10 1.98 6.67 -52.48 -0.35 1.63 16 31 H 0.39 7.06 8.59 -40.82 -0.35 6.70 16 32 H 0.06 0.91 7.63 -51.93 -0.40 0.51 16 33 H 0.05 0.78 7.92 -51.93 -0.41 0.37 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.71 8.00 -51.93 -0.42 0.30 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.56 7.69 -51.93 -0.40 0.16 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.34 3.27 8.31 -39.29 -0.33 2.94 16 43 H 0.28 7.62 8.73 -40.82 -0.36 7.26 16 LS Contribution 343.32 15.07 5.17 5.17 Total: -1.00 -30.93 343.32 -9.39 -40.32 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.75 Total: 5.40 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -2.87 Total: -8.79 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.36 Total: -58.64 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.18 Total: -7.50 kcal Atomic # 14 Polarization: 28.44 SS G_CDS: -4.41 Total: 24.03 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.93 -9.39 -40.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169563121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.623 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds