Wall clock time and date at job start Tue Mar 31 2020 07:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35608 * 117.00078 * 2 1 4 4 C 1.39159 * 120.50381 * 0.02562 * 3 2 1 5 5 C 1.38307 * 118.62713 * 179.97438 * 4 3 2 6 6 C 1.39933 * 119.59934 * 0.02562 * 5 4 3 7 7 N 1.38905 * 119.49708 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00279 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47373 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47246 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.91086 * 53.89263 * 10 9 8 12 12 C 1.53996 * 109.91946 * 175.00156 * 10 9 8 13 13 C 1.54598 * 105.13914 * 120.57510 * 12 10 9 14 14 C 1.54937 * 102.92385 * 21.95665 * 13 12 10 15 15 N 1.47907 * 109.91296 * 292.58873 * 10 9 8 16 16 N 1.31866 * 121.00919 * 359.74020 * 6 5 4 17 17 C 1.33826 * 121.46930 * 0.52786 * 16 6 5 18 18 C 1.40915 * 119.84923 * 179.75630 * 17 16 6 19 19 H 1.08003 * 119.99559 * 188.76135 * 18 17 16 20 20 C 1.40022 * 120.00174 * 8.75345 * 18 17 16 21 21 N 1.30780 * 119.99912 * 195.95479 * 20 18 17 22 22 Si 1.86805 * 119.99877 * 15.95101 * 20 18 17 23 23 H 1.48491 * 109.47438 * 269.99950 * 22 20 18 24 24 H 1.48501 * 109.46740 * 149.99895 * 22 20 18 25 25 H 1.48497 * 109.46688 * 30.00315 * 22 20 18 26 26 H 1.09008 * 109.47423 * 60.00127 * 1 2 3 27 27 H 1.09004 * 109.47335 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47515 * 300.00265 * 1 2 3 29 29 H 1.07994 * 120.68472 * 0.02562 * 4 3 2 30 30 H 1.08008 * 120.20228 * 179.97438 * 5 4 3 31 31 H 0.97006 * 120.00154 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47019 * 299.99940 * 8 7 6 33 33 H 1.09003 * 109.47065 * 59.99954 * 8 7 6 34 34 H 1.09000 * 109.47056 * 299.99988 * 9 8 7 35 35 H 1.08998 * 109.47450 * 60.00178 * 9 8 7 36 36 H 1.09000 * 110.30920 * 239.49514 * 12 10 9 37 37 H 1.08999 * 110.30482 * 1.56307 * 12 10 9 38 38 H 1.09001 * 110.71897 * 140.31732 * 13 12 10 39 39 H 1.08999 * 110.72320 * 263.41885 * 13 12 10 40 40 H 1.09000 * 110.66357 * 81.01878 * 14 13 12 41 41 H 1.08995 * 110.66492 * 204.15194 * 14 13 12 42 42 H 1.00897 * 111.00476 * 335.82853 * 15 10 9 43 43 H 0.96998 * 120.00595 * 354.79549 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2970 2.3820 0.0005 5 6 1.9650 3.5931 0.0011 6 6 3.3642 3.6107 0.0005 7 7 4.0328 4.8282 0.0005 8 6 3.2734 6.0810 0.0016 9 6 4.2426 7.2649 0.0020 10 6 3.4494 8.5733 0.0038 11 1 2.7412 8.5769 0.8323 12 6 4.4110 9.7695 0.1304 13 6 4.1675 10.6192 -1.1381 14 6 2.7481 10.1829 -1.5802 15 7 2.7305 8.7284 -1.2794 16 7 4.0577 2.4892 0.0046 17 6 3.4544 1.2946 -0.0011 18 6 4.2291 0.1176 -0.0016 19 1 3.7543 -0.8413 -0.1486 20 6 5.6144 0.1911 0.1882 21 7 6.3713 -0.8310 -0.1163 22 14 6.3814 1.7492 0.8764 23 1 6.7362 2.6613 -0.2403 24 1 7.6066 1.4020 1.6404 25 1 5.4111 2.4226 1.7765 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2176 2.3479 0.0014 30 1 1.4100 4.5197 0.0011 31 1 5.0027 4.8490 0.0005 32 1 2.6450 6.1258 -0.8879 33 1 2.6464 6.1250 0.8921 34 1 4.8707 7.2200 0.8917 35 1 4.8699 7.2212 -0.8883 36 1 4.1787 10.3487 1.0241 37 1 5.4438 9.4228 0.1628 38 1 4.1875 11.6826 -0.8996 39 1 4.9034 10.3839 -1.9070 40 1 1.9871 10.7049 -1.0002 41 1 2.6071 10.3569 -2.6469 42 1 3.1816 8.2021 -2.0126 43 1 5.9677 -1.6654 -0.4020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169563121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:16 Heat of formation + Delta-G solvation = -39.889496 kcal Electronic energy + Delta-G solvation = -23013.654885 eV Core-core repulsion = 19671.061938 eV Total energy + Delta-G solvation = -3342.592948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.95702 -39.88886 -38.83972 -36.83267 -35.44598 -32.93757 -32.69582 -30.81926 -30.52500 -28.22072 -27.59031 -26.64136 -24.01395 -23.35038 -22.37386 -21.95373 -21.08702 -20.25929 -18.56943 -18.29259 -17.36349 -16.61512 -16.55640 -16.36062 -16.15489 -15.86640 -15.50666 -15.24436 -14.87169 -14.69655 -14.54997 -14.16052 -14.00113 -13.86144 -13.36527 -13.25168 -12.88104 -12.72029 -12.48237 -12.34617 -12.29362 -12.12721 -11.94101 -11.81858 -11.65611 -11.54846 -11.41106 -11.07996 -10.33381 -10.23786 -9.76268 -9.52479 -9.26619 -8.28209 -6.56838 0.73774 1.02251 1.54870 1.71909 2.00236 2.41623 2.49691 2.69156 2.93056 3.29506 3.64158 3.81313 3.85760 3.98266 4.13530 4.20103 4.24385 4.32884 4.34543 4.46969 4.47429 4.60418 4.64322 4.69237 4.71259 4.72820 4.76704 4.88514 4.98304 5.06057 5.10105 5.16742 5.26322 5.33075 5.36552 5.43845 5.56815 5.69090 5.89930 6.00363 6.09574 6.44506 6.51874 6.62242 6.79673 7.12531 7.76306 7.98067 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.004004 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.446167 B = 6991.841478 C = 8379.011577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C -0.091 4.091 4 C -0.095 4.095 5 C -0.322 4.322 6 C 0.398 3.602 7 N -0.736 5.736 8 C 0.143 3.857 9 C -0.124 4.124 10 C 0.081 3.919 11 H 0.084 0.916 12 C -0.147 4.147 13 C -0.154 4.154 14 C 0.040 3.960 15 N -0.683 5.683 16 N -0.616 5.616 17 C 0.262 3.738 18 C -0.499 4.499 19 H 0.062 0.938 20 C 0.020 3.980 21 N -0.828 5.828 22 Si 1.184 2.816 23 H -0.280 1.280 24 H -0.324 1.324 25 H -0.286 1.286 26 H 0.052 0.948 27 H 0.108 0.892 28 H 0.054 0.946 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.395 0.605 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.339 0.661 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.593 21.205 -0.476 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.256 6.256 3 C -0.139 4.139 4 C -0.119 4.119 5 C -0.347 4.347 6 C 0.162 3.838 7 N -0.372 5.372 8 C 0.020 3.980 9 C -0.163 4.163 10 C -0.029 4.029 11 H 0.102 0.898 12 C -0.186 4.186 13 C -0.193 4.193 14 C -0.089 4.089 15 N -0.312 5.312 16 N -0.346 5.346 17 C 0.136 3.864 18 C -0.533 4.533 19 H 0.080 0.920 20 C -0.197 4.197 21 N -0.452 5.452 22 Si 1.014 2.986 23 H -0.207 1.207 24 H -0.257 1.257 25 H -0.214 1.214 26 H 0.071 0.929 27 H 0.126 0.874 28 H 0.072 0.928 29 H 0.160 0.840 30 H 0.152 0.848 31 H 0.229 0.771 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.156 0.844 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.128 21.688 0.085 22.286 hybrid contribution -1.308 -1.321 -0.813 2.029 sum -6.436 20.366 -0.728 21.371 Atomic orbital electron populations 1.23077 0.78541 1.04142 1.01051 1.85880 1.21538 1.27298 1.90930 1.19787 0.92615 0.84965 1.16515 1.21192 0.99520 0.91166 1.00039 1.20713 0.91919 0.98037 1.24077 1.18468 0.89284 0.85609 0.90444 1.44435 1.08250 1.01836 1.82664 1.21284 0.94334 0.81083 1.01333 1.22035 0.97831 0.92836 1.03565 1.22272 0.93959 0.93002 0.93716 0.89827 1.22866 1.00089 0.96606 0.99071 1.23086 0.98017 1.00865 0.97367 1.23161 0.96145 0.88116 1.01462 1.62856 1.54813 1.08692 1.04820 1.66293 1.37954 0.97423 1.32910 1.17819 0.88109 0.90268 0.90232 1.20464 0.94754 0.93397 1.44644 0.91984 1.28527 0.94629 1.06085 0.90424 1.70649 1.39939 1.04062 1.30541 0.81597 0.71013 0.69573 0.76408 1.20689 1.25687 1.21409 0.92900 0.87395 0.92793 0.84018 0.84756 0.77108 0.91973 0.92652 0.90052 0.90930 0.90568 0.90990 0.90000 0.91560 0.90245 0.90060 0.84422 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 9.83 113.37 1.11 1.98 16 2 O -0.34 -16.14 9.63 -89.18 -0.86 -17.00 16 3 C -0.09 -4.56 6.74 23.23 0.16 -4.41 16 4 C -0.09 -3.97 9.12 22.51 0.21 -3.76 16 5 C -0.32 -13.03 9.33 22.70 0.21 -12.82 16 6 C 0.40 17.55 7.65 133.45 1.02 18.57 16 7 N -0.74 -25.46 5.72 -344.87 -1.97 -27.43 16 8 C 0.14 3.62 4.79 86.38 0.41 4.03 16 9 C -0.12 -2.29 4.46 30.59 0.14 -2.15 16 10 C 0.08 1.30 3.38 45.06 0.15 1.45 16 11 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 12 C -0.15 -1.92 6.57 31.47 0.21 -1.71 16 13 C -0.15 -1.79 7.06 31.80 0.22 -1.57 16 14 C 0.04 0.53 7.55 86.65 0.65 1.18 16 15 N -0.68 -11.44 6.99 -480.18 -3.36 -14.80 16 16 N -0.62 -31.97 5.05 -186.18 -0.94 -32.91 16 17 C 0.26 14.67 6.28 40.23 0.25 14.92 16 18 C -0.50 -29.90 9.29 23.36 0.22 -29.69 16 19 H 0.06 3.91 7.56 -2.91 -0.02 3.88 16 20 C 0.02 1.15 5.51 85.28 0.47 1.62 16 21 N -0.83 -48.18 13.65 21.84 0.30 -47.88 16 22 Si 1.18 58.80 25.93 68.60 1.78 60.58 16 23 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.32 -15.53 7.11 99.48 0.71 -14.82 16 25 H -0.29 -14.37 6.54 99.48 0.65 -13.72 16 26 H 0.05 1.53 7.69 -2.38 -0.02 1.52 16 27 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.05 1.56 7.69 -2.39 -0.02 1.54 16 29 H 0.14 4.81 6.43 -2.91 -0.02 4.79 16 30 H 0.13 4.57 6.67 -2.91 -0.02 4.55 16 31 H 0.39 13.36 8.59 -92.70 -0.80 12.56 16 32 H 0.06 1.61 7.63 -2.39 -0.02 1.59 16 33 H 0.06 1.42 7.92 -2.39 -0.02 1.40 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.31 8.00 -2.39 -0.02 1.29 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 0.93 7.69 -2.39 -0.02 0.91 16 38 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.34 5.68 8.31 -89.70 -0.75 4.93 16 43 H 0.28 15.90 8.73 -92.71 -0.81 15.10 16 Total: -1.00 -68.65 343.32 -0.23 -68.88 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.61 Total: 22.91 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 5.44 Total: -12.35 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -5.97 Total: -123.03 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.86 Total: -17.00 kcal Atomic # 14 Polarization: 58.80 SS G_CDS: 1.78 Total: 60.58 kcal Total: -68.65 -0.23 -68.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169563121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.988 kcal (2) G-P(sol) polarization free energy of solvation -68.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds