Wall clock time and date at job start Tue Mar 31 2020 07:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35613 * 116.99881 * 2 1 4 4 C 1.39158 * 120.50420 * 0.02562 * 3 2 1 5 5 C 1.38310 * 118.62899 * 179.97438 * 4 3 2 6 6 C 1.39948 * 119.59317 * 0.02562 * 5 4 3 7 7 N 1.38904 * 119.49089 * 179.97438 * 6 5 4 8 8 C 1.46495 * 120.00437 * 0.02562 * 7 6 5 9 9 C 1.53007 * 109.47270 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.46035 * 65.01820 * 9 8 7 11 11 C 1.53036 * 109.46054 * 185.00171 * 9 8 7 12 12 C 1.53122 * 109.27578 * 179.19580 * 11 9 8 13 13 C 1.53113 * 109.16056 * 302.34526 * 12 11 9 14 14 C 1.53040 * 109.28166 * 57.65291 * 13 12 11 15 15 N 1.46848 * 109.45927 * 305.05207 * 9 8 7 16 16 N 1.31863 * 121.00740 * 359.74101 * 6 5 4 17 17 C 1.33824 * 121.47343 * 0.52612 * 16 6 5 18 18 C 1.40917 * 119.84734 * 179.75591 * 17 16 6 19 19 H 1.08003 * 119.99946 * 186.22918 * 18 17 16 20 20 C 1.40020 * 120.00335 * 6.23110 * 18 17 16 21 21 N 1.30778 * 120.00365 * 176.86418 * 20 18 17 22 22 Si 1.86810 * 119.99881 * 356.86785 * 20 18 17 23 23 H 1.48502 * 109.47007 * 180.02562 * 22 20 18 24 24 H 1.48494 * 109.47051 * 60.00107 * 22 20 18 25 25 H 1.48498 * 109.46617 * 300.00059 * 22 20 18 26 26 H 1.09002 * 109.47242 * 60.00339 * 1 2 3 27 27 H 1.09002 * 109.47074 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47564 * 300.00100 * 1 2 3 29 29 H 1.07996 * 120.68568 * 0.02562 * 4 3 2 30 30 H 1.07998 * 120.20248 * 180.02562 * 5 4 3 31 31 H 0.97001 * 119.99490 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47374 * 299.99768 * 8 7 6 33 33 H 1.08999 * 109.47274 * 59.99531 * 8 7 6 34 34 H 1.09005 * 109.50093 * 299.13315 * 11 9 8 35 35 H 1.08995 * 109.50857 * 59.25189 * 11 9 8 36 36 H 1.09002 * 109.52199 * 62.24989 * 12 11 9 37 37 H 1.09000 * 109.52166 * 182.37296 * 12 11 9 38 38 H 1.08997 * 109.50673 * 177.59743 * 13 12 11 39 39 H 1.09000 * 109.50478 * 297.71484 * 13 12 11 40 40 H 1.09000 * 109.45838 * 60.83972 * 14 13 12 41 41 H 1.09002 * 109.46310 * 180.80744 * 14 13 12 42 42 H 1.00892 * 111.00207 * 302.33712 * 15 9 8 43 43 H 0.97002 * 119.99916 * 355.07778 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2970 2.3820 0.0005 5 6 1.9649 3.5932 0.0011 6 6 3.3642 3.6107 0.0005 7 7 4.0328 4.8283 0.0005 8 6 3.2734 6.0810 0.0016 9 6 4.2426 7.2650 0.0020 10 1 4.8081 7.2717 -0.9298 11 6 3.4533 8.5700 0.1290 12 6 4.4283 9.7505 0.1491 13 6 5.4116 9.5704 1.3088 14 6 6.1441 8.2364 1.1477 15 7 5.1683 7.1391 1.1350 16 7 4.0577 2.4892 0.0046 17 6 3.4543 1.2947 -0.0011 18 6 4.2291 0.1176 -0.0016 19 1 3.7497 -0.8444 -0.1077 20 6 5.6204 0.1951 0.1353 21 7 6.3335 -0.8994 0.1964 22 14 6.4581 1.8621 0.2307 23 1 7.9241 1.6720 0.3722 24 1 5.9400 2.6100 1.4043 25 1 6.1763 2.6293 -1.0091 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2176 2.3479 0.0014 30 1 1.4099 4.5196 0.0019 31 1 5.0026 4.8490 0.0005 32 1 2.6450 6.1258 -0.8878 33 1 2.6463 6.1250 0.8921 34 1 2.7775 8.6706 -0.7203 35 1 2.8769 8.5582 1.0540 36 1 4.9773 9.7856 -0.7919 37 1 3.8732 10.6791 0.2818 38 1 6.1350 10.3858 1.3027 39 1 4.8661 9.5743 2.2525 40 1 6.7006 8.2385 0.2105 41 1 6.8348 8.0985 1.9797 42 1 4.6660 7.0917 2.0088 43 1 5.8941 -1.7639 0.2189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171329300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:21 Heat of formation + Delta-G solvation = -22.794747 kcal Electronic energy + Delta-G solvation = -23450.189606 eV Core-core repulsion = 20108.337942 eV Total energy + Delta-G solvation = -3341.851664 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.41239 -38.93759 -37.11333 -35.00427 -33.47783 -31.85486 -31.42763 -30.84511 -28.80321 -26.66351 -25.56988 -24.88812 -23.44435 -21.91189 -21.44172 -20.58226 -20.14431 -18.22999 -16.91479 -16.65164 -15.69580 -15.54028 -15.40613 -14.86558 -14.74939 -14.43252 -14.17643 -13.66984 -13.53006 -13.49507 -13.14011 -12.70310 -12.54181 -12.15964 -12.07897 -11.98952 -11.92965 -11.68891 -11.38637 -11.30771 -10.84992 -10.71602 -10.63124 -10.58632 -10.48329 -10.09303 -9.39227 -9.15321 -8.57427 -8.43926 -8.41670 -7.65821 -7.14507 -6.47722 -4.54127 2.65546 2.90548 3.70760 3.82670 3.86128 4.12567 4.21722 4.44223 4.56014 4.60208 4.64165 4.73572 4.77263 4.94587 5.09291 5.18277 5.28030 5.47313 5.56439 5.59382 5.67173 5.70211 5.72781 5.76680 5.78583 5.81551 5.84140 5.87160 5.96340 5.98631 6.12856 6.21707 6.48960 6.58328 6.92526 7.11080 7.26886 7.32363 7.46289 7.61522 7.93814 8.14994 8.24322 8.55499 8.61358 8.94624 9.66397 10.10458 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.004715 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.191471 B = 5937.431527 C = 7438.626058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.311 6.311 3 C -0.069 4.069 4 C -0.101 4.101 5 C -0.348 4.348 6 C 0.425 3.575 7 N -0.730 5.730 8 C 0.148 3.852 9 C 0.076 3.924 10 H 0.086 0.914 11 C -0.149 4.149 12 C -0.118 4.118 13 C -0.159 4.159 14 C 0.057 3.943 15 N -0.677 5.677 16 N -0.604 5.604 17 C 0.284 3.716 18 C -0.454 4.454 19 H 0.089 0.911 20 C 0.042 3.958 21 N -0.804 5.804 22 Si 1.162 2.838 23 H -0.339 1.339 24 H -0.287 1.287 25 H -0.289 1.289 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.403 0.597 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.343 0.657 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.019 17.507 0.895 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.224 6.224 3 C -0.117 4.117 4 C -0.125 4.125 5 C -0.374 4.374 6 C 0.189 3.811 7 N -0.366 5.366 8 C 0.022 3.978 9 C -0.034 4.034 10 H 0.105 0.895 11 C -0.189 4.189 12 C -0.156 4.156 13 C -0.198 4.198 14 C -0.072 4.072 15 N -0.306 5.306 16 N -0.334 5.334 17 C 0.158 3.842 18 C -0.487 4.487 19 H 0.107 0.893 20 C -0.179 4.179 21 N -0.426 5.426 22 Si 0.999 3.001 23 H -0.273 1.273 24 H -0.215 1.215 25 H -0.217 1.217 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.238 0.762 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.162 0.838 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.386 17.563 0.649 17.736 hybrid contribution -3.236 0.095 0.196 3.243 sum -5.621 17.658 0.846 18.550 Atomic orbital electron populations 1.22716 0.81792 1.01771 0.99746 1.85930 1.18117 1.27577 1.90790 1.19641 0.92843 0.83376 1.15800 1.20747 0.97571 0.92193 1.02007 1.20167 0.92019 0.96657 1.28584 1.18038 0.88213 0.84980 0.89839 1.44050 1.08416 1.01088 1.83087 1.21122 0.93233 0.82729 1.00733 1.21840 0.93111 0.92864 0.95622 0.89548 1.22201 0.98525 0.95474 1.02706 1.21534 0.97314 0.97897 0.98823 1.22281 0.99185 0.99687 0.98659 1.22027 0.94811 0.87659 1.02747 1.60554 1.19169 1.44718 1.06203 1.65927 1.36309 0.97049 1.34152 1.17738 0.86711 0.90161 0.89549 1.20706 0.93793 0.93505 1.40658 0.89275 1.27896 0.95081 1.06418 0.88511 1.70665 1.40594 1.00120 1.31209 0.81654 0.69097 0.70177 0.79181 1.27339 1.21526 1.21740 0.94336 0.90002 0.94327 0.87779 0.88231 0.76156 0.92347 0.93011 0.91119 0.91695 0.91832 0.92078 0.91626 0.92080 0.90885 0.90595 0.83835 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.83 101.05 0.99 1.61 16 2 O -0.31 -7.32 9.62 -18.54 -0.18 -7.50 16 3 C -0.07 -1.74 6.74 -38.10 -0.26 -2.00 16 4 C -0.10 -2.23 9.12 -39.21 -0.36 -2.59 16 5 C -0.35 -7.50 9.33 -38.91 -0.36 -7.87 16 6 C 0.42 9.79 7.65 -155.27 -1.19 8.60 16 7 N -0.73 -13.76 5.56 -60.35 -0.34 -14.09 16 8 C 0.15 2.06 4.53 -4.04 -0.02 2.04 16 9 C 0.08 0.84 2.58 -67.72 -0.17 0.67 16 10 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 11 C -0.15 -1.31 5.36 -26.65 -0.14 -1.45 16 12 C -0.12 -0.93 6.00 -26.61 -0.16 -1.09 16 13 C -0.16 -1.24 6.08 -26.65 -0.16 -1.40 16 14 C 0.06 0.54 6.55 -3.83 -0.03 0.51 16 15 N -0.68 -7.77 5.94 -106.76 -0.63 -8.40 16 16 N -0.60 -15.91 4.54 -10.20 -0.05 -15.95 16 17 C 0.28 7.83 6.43 -84.85 -0.55 7.29 16 18 C -0.45 -13.09 9.36 -37.90 -0.35 -13.44 16 19 H 0.09 2.63 7.54 -52.48 -0.40 2.23 16 20 C 0.04 1.19 5.52 -17.33 -0.10 1.10 16 21 N -0.80 -22.72 13.65 55.55 0.76 -21.96 16 22 Si 1.16 29.79 25.45 -169.99 -4.33 25.47 16 23 H -0.34 -8.60 7.11 56.52 0.40 -8.20 16 24 H -0.29 -7.40 6.93 56.52 0.39 -7.01 16 25 H -0.29 -7.38 6.94 56.52 0.39 -6.99 16 26 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 29 H 0.10 1.97 6.43 -52.49 -0.34 1.63 16 30 H 0.10 1.86 6.67 -52.49 -0.35 1.51 16 31 H 0.40 7.82 8.26 -40.82 -0.34 7.48 16 32 H 0.06 0.79 7.91 -51.93 -0.41 0.38 16 33 H 0.05 0.71 7.92 -51.93 -0.41 0.30 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.34 3.84 8.79 -39.30 -0.35 3.49 16 43 H 0.28 7.67 8.72 -40.82 -0.36 7.32 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -31.15 339.87 -9.28 -40.43 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.79 Total: 4.92 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.85 Total: -8.02 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.26 Total: -60.42 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.18 Total: -7.50 kcal Atomic # 14 Polarization: 29.79 SS G_CDS: -4.33 Total: 25.47 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.15 -9.28 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171329300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.635 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds