Wall clock time and date at job start Tue Mar 31 2020 07:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35613 * 116.99881 * 2 1 4 4 C 1.39158 * 120.50420 * 0.02562 * 3 2 1 5 5 C 1.38310 * 118.62899 * 179.97438 * 4 3 2 6 6 C 1.39948 * 119.59317 * 0.02562 * 5 4 3 7 7 N 1.38904 * 119.49089 * 179.97438 * 6 5 4 8 8 C 1.46495 * 120.00437 * 0.02562 * 7 6 5 9 9 C 1.53007 * 109.47270 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.46035 * 65.01820 * 9 8 7 11 11 C 1.53036 * 109.46054 * 185.00171 * 9 8 7 12 12 C 1.53122 * 109.27578 * 179.19580 * 11 9 8 13 13 C 1.53113 * 109.16056 * 302.34526 * 12 11 9 14 14 C 1.53040 * 109.28166 * 57.65291 * 13 12 11 15 15 N 1.46848 * 109.45927 * 305.05207 * 9 8 7 16 16 N 1.31863 * 121.00740 * 359.74101 * 6 5 4 17 17 C 1.33824 * 121.47343 * 0.52612 * 16 6 5 18 18 C 1.40917 * 119.84734 * 179.75591 * 17 16 6 19 19 H 1.08003 * 119.99946 * 186.22918 * 18 17 16 20 20 C 1.40020 * 120.00335 * 6.23110 * 18 17 16 21 21 N 1.30778 * 120.00365 * 176.86418 * 20 18 17 22 22 Si 1.86810 * 119.99881 * 356.86785 * 20 18 17 23 23 H 1.48502 * 109.47007 * 180.02562 * 22 20 18 24 24 H 1.48494 * 109.47051 * 60.00107 * 22 20 18 25 25 H 1.48498 * 109.46617 * 300.00059 * 22 20 18 26 26 H 1.09002 * 109.47242 * 60.00339 * 1 2 3 27 27 H 1.09002 * 109.47074 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47564 * 300.00100 * 1 2 3 29 29 H 1.07996 * 120.68568 * 0.02562 * 4 3 2 30 30 H 1.07998 * 120.20248 * 180.02562 * 5 4 3 31 31 H 0.97001 * 119.99490 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47374 * 299.99768 * 8 7 6 33 33 H 1.08999 * 109.47274 * 59.99531 * 8 7 6 34 34 H 1.09005 * 109.50093 * 299.13315 * 11 9 8 35 35 H 1.08995 * 109.50857 * 59.25189 * 11 9 8 36 36 H 1.09002 * 109.52199 * 62.24989 * 12 11 9 37 37 H 1.09000 * 109.52166 * 182.37296 * 12 11 9 38 38 H 1.08997 * 109.50673 * 177.59743 * 13 12 11 39 39 H 1.09000 * 109.50478 * 297.71484 * 13 12 11 40 40 H 1.09000 * 109.45838 * 60.83972 * 14 13 12 41 41 H 1.09002 * 109.46310 * 180.80744 * 14 13 12 42 42 H 1.00892 * 111.00207 * 302.33712 * 15 9 8 43 43 H 0.97002 * 119.99916 * 355.07778 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2970 2.3820 0.0005 5 6 1.9649 3.5932 0.0011 6 6 3.3642 3.6107 0.0005 7 7 4.0328 4.8283 0.0005 8 6 3.2734 6.0810 0.0016 9 6 4.2426 7.2650 0.0020 10 1 4.8081 7.2717 -0.9298 11 6 3.4533 8.5700 0.1290 12 6 4.4283 9.7505 0.1491 13 6 5.4116 9.5704 1.3088 14 6 6.1441 8.2364 1.1477 15 7 5.1683 7.1391 1.1350 16 7 4.0577 2.4892 0.0046 17 6 3.4543 1.2947 -0.0011 18 6 4.2291 0.1176 -0.0016 19 1 3.7497 -0.8444 -0.1077 20 6 5.6204 0.1951 0.1353 21 7 6.3335 -0.8994 0.1964 22 14 6.4581 1.8621 0.2307 23 1 7.9241 1.6720 0.3722 24 1 5.9400 2.6100 1.4043 25 1 6.1763 2.6293 -1.0091 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2176 2.3479 0.0014 30 1 1.4099 4.5196 0.0019 31 1 5.0026 4.8490 0.0005 32 1 2.6450 6.1258 -0.8878 33 1 2.6463 6.1250 0.8921 34 1 2.7775 8.6706 -0.7203 35 1 2.8769 8.5582 1.0540 36 1 4.9773 9.7856 -0.7919 37 1 3.8732 10.6791 0.2818 38 1 6.1350 10.3858 1.3027 39 1 4.8661 9.5743 2.2525 40 1 6.7006 8.2385 0.2105 41 1 6.8348 8.0985 1.9797 42 1 4.6660 7.0917 2.0088 43 1 5.8941 -1.7639 0.2189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171329300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:20 Heat of formation + Delta-G solvation = -44.118678 kcal Electronic energy + Delta-G solvation = -23451.114281 eV Core-core repulsion = 20108.337942 eV Total energy + Delta-G solvation = -3342.776339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98808 -40.02377 -38.76390 -36.57723 -35.29981 -32.78421 -32.65746 -32.45696 -30.39629 -28.13377 -26.99290 -26.47981 -24.21817 -23.55320 -22.68724 -21.85900 -21.25865 -20.26397 -18.59782 -18.26196 -17.26159 -16.60102 -16.46374 -16.27547 -15.81979 -15.67876 -15.43609 -15.23526 -15.05646 -14.87342 -14.59072 -14.10726 -13.89814 -13.82143 -13.60776 -13.28606 -12.96109 -12.91508 -12.59764 -12.39825 -12.19701 -12.12650 -12.00463 -11.94221 -11.54147 -11.40895 -11.32304 -11.20084 -10.33400 -10.21178 -9.67511 -9.22297 -9.20208 -8.24809 -6.58184 0.72987 1.04583 1.62881 1.77899 2.06392 2.46417 2.56284 2.73969 2.94192 3.31859 3.63894 3.75156 3.92610 4.04814 4.13396 4.18804 4.31612 4.34397 4.37254 4.47588 4.47765 4.53395 4.64505 4.70011 4.75582 4.77285 4.80918 4.89464 4.94526 5.08213 5.13256 5.18446 5.20924 5.32617 5.41788 5.44602 5.57169 5.69456 5.98804 6.09742 6.14528 6.48031 6.56230 6.64403 6.84622 7.14378 7.76475 8.00745 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.004715 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.191471 B = 5937.431527 C = 7438.626058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.343 6.343 3 C -0.092 4.092 4 C -0.091 4.091 5 C -0.322 4.322 6 C 0.403 3.597 7 N -0.724 5.724 8 C 0.143 3.857 9 C 0.084 3.916 10 H 0.079 0.921 11 C -0.142 4.142 12 C -0.117 4.117 13 C -0.152 4.152 14 C 0.057 3.943 15 N -0.697 5.697 16 N -0.621 5.621 17 C 0.263 3.737 18 C -0.496 4.496 19 H 0.063 0.937 20 C 0.014 3.986 21 N -0.833 5.833 22 Si 1.204 2.796 23 H -0.338 1.338 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.054 0.946 27 H 0.107 0.893 28 H 0.054 0.946 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.398 0.602 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.344 0.656 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.338 21.121 0.950 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.258 6.258 3 C -0.140 4.140 4 C -0.115 4.115 5 C -0.347 4.347 6 C 0.166 3.834 7 N -0.359 5.359 8 C 0.019 3.981 9 C -0.027 4.027 10 H 0.097 0.903 11 C -0.181 4.181 12 C -0.154 4.154 13 C -0.192 4.192 14 C -0.072 4.072 15 N -0.327 5.327 16 N -0.352 5.352 17 C 0.136 3.864 18 C -0.530 4.530 19 H 0.081 0.919 20 C -0.201 4.201 21 N -0.457 5.457 22 Si 1.039 2.961 23 H -0.273 1.273 24 H -0.221 1.221 25 H -0.220 1.220 26 H 0.072 0.928 27 H 0.125 0.875 28 H 0.072 0.928 29 H 0.162 0.838 30 H 0.158 0.842 31 H 0.233 0.767 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.162 0.838 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.723 21.225 0.701 21.755 hybrid contribution -2.798 -0.787 0.174 2.912 sum -7.521 20.439 0.874 21.796 Atomic orbital electron populations 1.23076 0.78501 1.04120 1.01094 1.85885 1.21577 1.27340 1.90976 1.19718 0.92416 0.85061 1.16771 1.21208 0.99569 0.91085 0.99671 1.20708 0.91598 0.98168 1.24260 1.18516 0.89395 0.85423 0.90018 1.44306 1.08580 1.01282 1.81747 1.21439 0.93779 0.81374 1.01528 1.21729 0.92768 0.92877 0.95276 0.90250 1.22129 0.98482 0.94215 1.03307 1.21536 0.97188 0.97987 0.98724 1.22209 0.99273 0.98911 0.98766 1.22035 0.94531 0.88047 1.02588 1.60544 1.19669 1.46154 1.06317 1.65786 1.37583 0.97754 1.34060 1.17883 0.88386 0.90187 0.89937 1.20536 0.94304 0.93323 1.44790 0.91914 1.28579 0.95503 1.07843 0.88196 1.70681 1.40490 1.00114 1.34436 0.81064 0.68406 0.68085 0.78522 1.27299 1.22104 1.22014 0.92753 0.87510 0.92782 0.83793 0.84241 0.76663 0.91218 0.92074 0.90218 0.91268 0.91937 0.90862 0.90598 0.91911 0.91357 0.90476 0.83770 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.83 113.37 1.11 1.98 16 2 O -0.34 -16.12 9.62 -89.24 -0.86 -16.97 16 3 C -0.09 -4.57 6.74 23.23 0.16 -4.41 16 4 C -0.09 -3.70 9.12 22.51 0.21 -3.50 16 5 C -0.32 -12.55 9.33 22.70 0.21 -12.34 16 6 C 0.40 17.70 7.65 133.46 1.02 18.72 16 7 N -0.72 -25.64 5.56 -344.85 -1.92 -27.55 16 8 C 0.14 3.47 4.53 86.38 0.39 3.87 16 9 C 0.08 1.63 2.58 44.94 0.12 1.75 16 10 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 11 C -0.14 -1.98 5.36 30.65 0.16 -1.81 16 12 C -0.12 -1.46 6.00 30.67 0.18 -1.27 16 13 C -0.15 -1.96 6.08 30.65 0.19 -1.77 16 14 C 0.06 0.96 6.55 86.33 0.57 1.53 16 15 N -0.70 -14.57 5.94 -491.67 -2.92 -17.49 16 16 N -0.62 -32.61 4.54 -186.17 -0.85 -33.46 16 17 C 0.26 14.77 6.43 40.23 0.26 15.03 16 18 C -0.50 -30.13 9.36 23.36 0.22 -29.91 16 19 H 0.06 3.99 7.54 -2.91 -0.02 3.97 16 20 C 0.01 0.86 5.52 85.28 0.47 1.33 16 21 N -0.83 -49.61 13.65 21.84 0.30 -49.31 16 22 Si 1.20 62.71 25.45 68.60 1.75 64.46 16 23 H -0.34 -17.25 7.11 99.48 0.71 -16.54 16 24 H -0.29 -15.19 6.93 99.48 0.69 -14.50 16 25 H -0.29 -15.00 6.94 99.48 0.69 -14.31 16 26 H 0.05 1.53 7.69 -2.39 -0.02 1.52 16 27 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.05 1.53 7.69 -2.39 -0.02 1.51 16 29 H 0.14 4.67 6.43 -2.91 -0.02 4.65 16 30 H 0.14 4.34 6.67 -2.91 -0.02 4.33 16 31 H 0.40 14.90 8.26 -92.71 -0.77 14.13 16 32 H 0.07 1.58 7.91 -2.39 -0.02 1.56 16 33 H 0.06 1.41 7.92 -2.39 -0.02 1.39 16 34 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.34 6.94 8.79 -89.70 -0.79 6.16 16 43 H 0.28 16.16 8.72 -92.71 -0.81 15.35 16 Total: -1.00 -70.23 339.87 0.16 -70.07 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.60 Total: 21.10 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 5.26 Total: -10.83 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -5.38 Total: -127.81 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.86 Total: -16.97 kcal Atomic # 14 Polarization: 62.71 SS G_CDS: 1.75 Total: 64.46 kcal Total: -70.23 0.16 -70.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171329300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.950 kcal (2) G-P(sol) polarization free energy of solvation -70.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds