Wall clock time and date at job start Tue Mar 31 2020 07:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35618 * 117.00004 * 2 1 4 4 C 1.39158 * 120.50435 * 0.24504 * 3 2 1 5 5 C 1.38309 * 118.62605 * 180.26434 * 4 3 2 6 6 C 1.39939 * 119.59791 * 359.73594 * 5 4 3 7 7 N 1.38901 * 119.49568 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00296 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.47343 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.45940 * 295.02053 * 9 8 7 11 11 C 1.53039 * 109.46367 * 175.05722 * 9 8 7 12 12 C 1.53120 * 109.27970 * 180.80337 * 11 9 8 13 13 C 1.53122 * 109.15991 * 57.64979 * 12 11 9 14 14 C 1.53030 * 109.27924 * 302.34831 * 13 12 11 15 15 N 1.46842 * 109.46619 * 55.00006 * 9 8 7 16 16 N 1.31871 * 121.00545 * 0.02562 * 6 5 4 17 17 C 1.33815 * 121.47616 * 359.97438 * 16 6 5 18 18 C 1.40916 * 119.85103 * 179.97438 * 17 16 6 19 19 H 1.08005 * 119.99741 * 187.30918 * 18 17 16 20 20 C 1.40023 * 120.00171 * 7.30478 * 18 17 16 21 21 N 1.30782 * 119.99643 * 7.53794 * 20 18 17 22 22 Si 1.86800 * 120.00271 * 187.26718 * 20 18 17 23 23 H 1.48503 * 109.47030 * 84.98890 * 22 20 18 24 24 H 1.48498 * 109.47006 * 204.98546 * 22 20 18 25 25 H 1.48497 * 109.46912 * 324.98835 * 22 20 18 26 26 H 1.08997 * 109.47071 * 60.00244 * 1 2 3 27 27 H 1.08999 * 109.47072 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47136 * 300.00176 * 1 2 3 29 29 H 1.07997 * 120.68470 * 359.97438 * 4 3 2 30 30 H 1.07998 * 120.20020 * 179.75065 * 5 4 3 31 31 H 0.97002 * 119.99880 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.47272 * 300.00238 * 8 7 6 33 33 H 1.09008 * 109.47133 * 60.00201 * 8 7 6 34 34 H 1.09000 * 109.49994 * 300.74309 * 11 9 8 35 35 H 1.08996 * 109.50362 * 60.85677 * 11 9 8 36 36 H 1.08999 * 109.51965 * 297.74834 * 12 11 9 37 37 H 1.08997 * 109.57206 * 177.58709 * 12 11 9 38 38 H 1.08999 * 109.50176 * 182.40009 * 13 12 11 39 39 H 1.09005 * 109.53065 * 62.30742 * 13 12 11 40 40 H 1.09001 * 109.46389 * 299.16339 * 14 13 12 41 41 H 1.09001 * 109.46387 * 179.19472 * 14 13 12 42 42 H 1.00903 * 111.00114 * 305.85976 * 15 9 8 43 43 H 0.97007 * 120.00090 * 179.72293 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3821 0.0051 5 6 1.9650 3.5932 -0.0007 6 6 3.3643 3.6108 -0.0058 7 7 4.0329 4.8282 -0.0122 8 6 3.2735 6.0810 -0.0129 9 6 4.2427 7.2649 -0.0210 10 1 4.8132 7.2735 0.9078 11 6 3.4528 8.5697 -0.1460 12 6 4.4276 9.7502 -0.1739 13 6 5.4045 9.5677 -1.3388 14 6 6.1378 8.2341 -1.1791 15 7 5.1621 7.1369 -1.1588 16 7 4.0577 2.4891 -0.0058 17 6 3.4545 1.2947 -0.0003 18 6 4.2292 0.1176 -0.0010 19 1 3.7505 -0.8438 -0.1156 20 6 5.6194 0.1943 0.1468 21 7 6.1844 1.3387 0.4324 22 14 6.6665 -1.3393 -0.0564 23 1 6.9733 -1.5421 -1.4951 24 1 7.9331 -1.1779 0.7018 25 1 5.9254 -2.5168 0.4626 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2177 2.3479 0.0088 30 1 1.4100 4.5196 -0.0010 31 1 5.0027 4.8489 -0.0162 32 1 2.6421 6.1227 -0.9004 33 1 2.6494 6.1281 0.8796 34 1 2.8713 8.5561 -1.0679 35 1 2.7817 8.6719 0.7067 36 1 4.9818 9.7870 0.7639 37 1 3.8727 10.6789 -0.3059 38 1 6.1278 10.3832 -1.3382 39 1 4.8542 9.5701 -2.2797 40 1 6.6994 8.2379 -0.2450 41 1 6.8239 8.0945 -2.0146 42 1 5.6257 6.2407 -1.1500 43 1 7.1472 1.3912 0.5388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171329302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:25 Heat of formation + Delta-G solvation = -2.671759 kcal Electronic energy + Delta-G solvation = -23252.121871 eV Core-core repulsion = 19911.142805 eV Total energy + Delta-G solvation = -3340.979066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.09911 -38.58608 -36.80763 -34.78008 -33.29766 -31.94667 -31.17638 -30.25205 -28.57987 -26.47276 -25.61612 -24.90528 -23.35314 -21.91826 -21.14858 -20.18796 -19.69125 -17.37739 -17.02090 -16.44064 -15.92433 -15.23085 -15.03242 -14.76642 -14.56523 -14.29300 -14.14854 -13.80901 -13.22632 -13.11566 -12.98699 -12.89841 -12.49087 -12.23629 -11.94048 -11.74961 -11.51777 -11.23060 -11.14522 -11.09779 -10.88576 -10.59737 -10.45395 -10.40090 -10.35534 -10.34322 -9.78055 -9.36304 -8.39633 -8.37735 -7.97503 -7.61397 -6.42873 -6.19827 -4.30307 2.86687 3.14246 3.17508 3.18808 3.31910 4.02083 4.04961 4.25526 4.65678 4.73838 4.79823 4.84686 4.91875 5.17070 5.27842 5.36301 5.48496 5.62291 5.67359 5.79880 5.83092 5.84437 5.85229 5.93043 6.01551 6.02284 6.03059 6.12656 6.14061 6.18494 6.34117 6.45444 6.75731 6.84574 7.08416 7.24135 7.35250 7.42257 7.54987 7.74442 8.24701 8.33353 8.48630 8.71520 8.84008 9.22039 10.21235 10.38787 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.004238 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.340417 B = 6606.036600 C = 8238.299147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.078 4.078 4 C -0.113 4.113 5 C -0.344 4.344 6 C 0.395 3.605 7 N -0.737 5.737 8 C 0.149 3.851 9 C 0.080 3.920 10 H 0.040 0.960 11 C -0.110 4.110 12 C -0.120 4.120 13 C -0.117 4.117 14 C 0.058 3.942 15 N -0.683 5.683 16 N -0.517 5.517 17 C 0.293 3.707 18 C -0.417 4.417 19 H 0.091 0.909 20 C 0.072 3.928 21 N -0.719 5.719 22 Si 0.907 3.093 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.262 1.262 26 H 0.036 0.964 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.390 0.610 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.027 0.973 41 H 0.073 0.927 42 H 0.349 0.651 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 11.748 -0.762 11.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.225 6.225 3 C -0.125 4.125 4 C -0.138 4.138 5 C -0.370 4.370 6 C 0.158 3.842 7 N -0.375 5.375 8 C 0.023 3.977 9 C -0.030 4.030 10 H 0.058 0.942 11 C -0.148 4.148 12 C -0.158 4.158 13 C -0.155 4.155 14 C -0.072 4.072 15 N -0.318 5.318 16 N -0.240 5.240 17 C 0.165 3.835 18 C -0.449 4.449 19 H 0.109 0.891 20 C -0.153 4.153 21 N -0.341 5.341 22 Si 0.732 3.268 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.186 1.186 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.225 0.775 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.170 0.830 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.142 12.100 -1.142 12.207 hybrid contribution 0.160 -0.613 0.682 0.931 sum -0.982 11.487 -0.460 11.538 Atomic orbital electron populations 1.22679 0.82253 1.01460 0.99629 1.85918 1.17784 1.27912 1.90927 1.20030 0.93447 0.83094 1.15960 1.20676 0.97256 0.92387 1.03477 1.20340 0.92813 0.96319 1.27557 1.18412 0.87716 0.86547 0.91571 1.43969 1.07454 1.01653 1.84439 1.21127 0.93609 0.82248 1.00749 1.21691 0.94230 0.95143 0.91970 0.94162 1.21557 0.97663 0.93023 1.02589 1.21559 0.97591 0.98104 0.98502 1.21590 0.98369 0.96299 0.99267 1.21899 0.93572 0.91637 1.00077 1.60267 1.21268 1.05880 1.44362 1.68278 1.35051 0.95053 1.25585 1.17722 0.85007 0.90986 0.89829 1.19497 0.91036 0.93311 1.41063 0.89141 1.26040 0.98763 0.97001 0.93484 1.70105 1.11071 1.25069 1.27874 0.86349 0.78982 0.82281 0.79225 1.19342 1.20401 1.18554 0.94528 0.90220 0.94522 0.88304 0.88986 0.77515 0.92308 0.92869 0.90849 0.91468 0.92410 0.91900 0.91974 0.91164 0.95457 0.90892 0.83020 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.83 101.05 0.99 1.64 16 2 O -0.31 -7.44 9.62 -18.55 -0.18 -7.62 16 3 C -0.08 -2.02 6.74 -38.10 -0.26 -2.27 16 4 C -0.11 -2.68 9.12 -39.21 -0.36 -3.03 16 5 C -0.34 -8.05 9.33 -38.92 -0.36 -8.41 16 6 C 0.40 9.69 7.65 -155.26 -1.19 8.51 16 7 N -0.74 -14.69 5.42 -60.35 -0.33 -15.01 16 8 C 0.15 2.37 4.58 -4.04 -0.02 2.35 16 9 C 0.08 1.05 2.67 -67.73 -0.18 0.87 16 10 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 11 C -0.11 -1.20 5.37 -26.65 -0.14 -1.34 16 12 C -0.12 -1.14 6.00 -26.61 -0.16 -1.30 16 13 C -0.12 -1.14 6.09 -26.65 -0.16 -1.30 16 14 C 0.06 0.64 6.55 -3.84 -0.03 0.61 16 15 N -0.68 -9.12 6.50 -106.77 -0.69 -9.81 16 16 N -0.52 -14.30 7.99 -10.20 -0.08 -14.38 16 17 C 0.29 8.30 6.53 -84.85 -0.55 7.75 16 18 C -0.42 -11.58 8.92 -37.90 -0.34 -11.92 16 19 H 0.09 2.45 7.34 -52.48 -0.39 2.06 16 20 C 0.07 1.86 5.47 -17.33 -0.09 1.77 16 21 N -0.72 -19.08 11.57 55.55 0.64 -18.44 16 22 Si 0.91 19.07 29.57 -169.99 -5.03 14.04 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 26 H 0.04 0.61 7.70 -51.93 -0.40 0.21 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.04 0.61 7.68 -51.93 -0.40 0.21 16 29 H 0.10 2.03 6.43 -52.49 -0.34 1.69 16 30 H 0.09 1.92 6.67 -52.49 -0.35 1.57 16 31 H 0.39 7.69 7.23 -40.82 -0.30 7.39 16 32 H 0.06 0.98 7.91 -51.93 -0.41 0.57 16 33 H 0.05 0.84 7.92 -51.92 -0.41 0.43 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.35 5.06 7.07 -39.29 -0.28 4.78 16 43 H 0.27 6.51 8.30 -40.82 -0.34 6.18 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -30.25 342.51 -9.98 -40.23 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -6.63 Total: 11.92 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -2.85 Total: -6.09 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.46 Total: -57.65 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.18 Total: -7.62 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.25 -9.98 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171329302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.559 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds