Wall clock time and date at job start Tue Mar 31 2020 07:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35618 * 117.00004 * 2 1 4 4 C 1.39158 * 120.50435 * 0.24504 * 3 2 1 5 5 C 1.38309 * 118.62605 * 180.26434 * 4 3 2 6 6 C 1.39939 * 119.59791 * 359.73594 * 5 4 3 7 7 N 1.38901 * 119.49568 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00296 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.47343 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.45940 * 295.02053 * 9 8 7 11 11 C 1.53039 * 109.46367 * 175.05722 * 9 8 7 12 12 C 1.53120 * 109.27970 * 180.80337 * 11 9 8 13 13 C 1.53122 * 109.15991 * 57.64979 * 12 11 9 14 14 C 1.53030 * 109.27924 * 302.34831 * 13 12 11 15 15 N 1.46842 * 109.46619 * 55.00006 * 9 8 7 16 16 N 1.31871 * 121.00545 * 0.02562 * 6 5 4 17 17 C 1.33815 * 121.47616 * 359.97438 * 16 6 5 18 18 C 1.40916 * 119.85103 * 179.97438 * 17 16 6 19 19 H 1.08005 * 119.99741 * 187.30918 * 18 17 16 20 20 C 1.40023 * 120.00171 * 7.30478 * 18 17 16 21 21 N 1.30782 * 119.99643 * 7.53794 * 20 18 17 22 22 Si 1.86800 * 120.00271 * 187.26718 * 20 18 17 23 23 H 1.48503 * 109.47030 * 84.98890 * 22 20 18 24 24 H 1.48498 * 109.47006 * 204.98546 * 22 20 18 25 25 H 1.48497 * 109.46912 * 324.98835 * 22 20 18 26 26 H 1.08997 * 109.47071 * 60.00244 * 1 2 3 27 27 H 1.08999 * 109.47072 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47136 * 300.00176 * 1 2 3 29 29 H 1.07997 * 120.68470 * 359.97438 * 4 3 2 30 30 H 1.07998 * 120.20020 * 179.75065 * 5 4 3 31 31 H 0.97002 * 119.99880 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.47272 * 300.00238 * 8 7 6 33 33 H 1.09008 * 109.47133 * 60.00201 * 8 7 6 34 34 H 1.09000 * 109.49994 * 300.74309 * 11 9 8 35 35 H 1.08996 * 109.50362 * 60.85677 * 11 9 8 36 36 H 1.08999 * 109.51965 * 297.74834 * 12 11 9 37 37 H 1.08997 * 109.57206 * 177.58709 * 12 11 9 38 38 H 1.08999 * 109.50176 * 182.40009 * 13 12 11 39 39 H 1.09005 * 109.53065 * 62.30742 * 13 12 11 40 40 H 1.09001 * 109.46389 * 299.16339 * 14 13 12 41 41 H 1.09001 * 109.46387 * 179.19472 * 14 13 12 42 42 H 1.00903 * 111.00114 * 305.85976 * 15 9 8 43 43 H 0.97007 * 120.00090 * 179.72293 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3821 0.0051 5 6 1.9650 3.5932 -0.0007 6 6 3.3643 3.6108 -0.0058 7 7 4.0329 4.8282 -0.0122 8 6 3.2735 6.0810 -0.0129 9 6 4.2427 7.2649 -0.0210 10 1 4.8132 7.2735 0.9078 11 6 3.4528 8.5697 -0.1460 12 6 4.4276 9.7502 -0.1739 13 6 5.4045 9.5677 -1.3388 14 6 6.1378 8.2341 -1.1791 15 7 5.1621 7.1369 -1.1588 16 7 4.0577 2.4891 -0.0058 17 6 3.4545 1.2947 -0.0003 18 6 4.2292 0.1176 -0.0010 19 1 3.7505 -0.8438 -0.1156 20 6 5.6194 0.1943 0.1468 21 7 6.1844 1.3387 0.4324 22 14 6.6665 -1.3393 -0.0564 23 1 6.9733 -1.5421 -1.4951 24 1 7.9331 -1.1779 0.7018 25 1 5.9254 -2.5168 0.4626 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2177 2.3479 0.0088 30 1 1.4100 4.5196 -0.0010 31 1 5.0027 4.8489 -0.0162 32 1 2.6421 6.1227 -0.9004 33 1 2.6494 6.1281 0.8796 34 1 2.8713 8.5561 -1.0679 35 1 2.7817 8.6719 0.7067 36 1 4.9818 9.7870 0.7639 37 1 3.8727 10.6789 -0.3059 38 1 6.1278 10.3832 -1.3382 39 1 4.8542 9.5701 -2.2797 40 1 6.6994 8.2379 -0.2450 41 1 6.8239 8.0945 -2.0146 42 1 5.6257 6.2407 -1.1500 43 1 7.1472 1.3912 0.5388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171329302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:24 Heat of formation + Delta-G solvation = -22.673860 kcal Electronic energy + Delta-G solvation = -23252.989227 eV Core-core repulsion = 19911.142805 eV Total energy + Delta-G solvation = -3341.846422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67697 -39.87687 -38.49637 -36.37851 -35.05172 -32.90059 -32.42983 -32.15522 -30.24579 -28.03116 -27.12774 -26.49725 -24.30237 -23.51992 -22.59369 -21.86974 -20.60207 -19.28909 -18.51564 -18.18217 -17.25175 -16.76876 -16.50617 -16.29140 -16.14788 -15.65092 -15.21571 -14.86683 -14.73614 -14.53751 -14.37972 -14.08710 -14.00187 -13.57130 -13.43947 -13.24387 -12.91695 -12.86779 -12.80365 -12.46035 -12.12589 -12.05285 -11.92471 -11.66734 -11.58668 -11.35478 -11.25543 -11.21359 -10.11445 -9.90266 -9.55740 -9.40690 -8.33055 -8.02683 -6.30205 1.00490 1.28873 1.42335 1.55225 1.58888 2.27265 2.57965 2.91250 3.04882 3.18412 3.79126 3.91935 3.98173 4.05011 4.18677 4.28301 4.32739 4.40945 4.46704 4.52915 4.57727 4.59776 4.68505 4.76481 4.80133 4.85969 4.88600 4.95185 4.98774 5.03169 5.10015 5.22513 5.28062 5.33611 5.48146 5.52409 5.73669 5.87063 6.10809 6.27306 6.32411 6.43735 6.74523 6.85107 6.99824 7.34765 8.29535 8.49548 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.004238 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.340417 B = 6606.036600 C = 8238.299147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.338 6.338 3 C -0.100 4.100 4 C -0.112 4.112 5 C -0.343 4.343 6 C 0.376 3.624 7 N -0.730 5.730 8 C 0.150 3.850 9 C 0.087 3.913 10 H 0.036 0.964 11 C -0.107 4.107 12 C -0.117 4.117 13 C -0.115 4.115 14 C 0.054 3.946 15 N -0.694 5.694 16 N -0.546 5.546 17 C 0.256 3.744 18 C -0.455 4.455 19 H 0.083 0.917 20 C 0.030 3.970 21 N -0.753 5.753 22 Si 0.984 3.016 23 H -0.264 1.264 24 H -0.265 1.265 25 H -0.259 1.259 26 H 0.047 0.953 27 H 0.111 0.889 28 H 0.047 0.953 29 H 0.132 0.868 30 H 0.119 0.881 31 H 0.389 0.611 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.028 0.972 41 H 0.077 0.923 42 H 0.338 0.662 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 12.924 -0.757 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.252 6.252 3 C -0.148 4.148 4 C -0.136 4.136 5 C -0.369 4.369 6 C 0.138 3.862 7 N -0.367 5.367 8 C 0.025 3.975 9 C -0.023 4.023 10 H 0.054 0.946 11 C -0.145 4.145 12 C -0.155 4.155 13 C -0.152 4.152 14 C -0.075 4.075 15 N -0.327 5.327 16 N -0.269 5.269 17 C 0.128 3.872 18 C -0.487 4.487 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.375 5.375 22 Si 0.805 3.195 23 H -0.189 1.189 24 H -0.190 1.190 25 H -0.183 1.183 26 H 0.066 0.934 27 H 0.129 0.871 28 H 0.065 0.935 29 H 0.149 0.851 30 H 0.137 0.863 31 H 0.223 0.777 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.046 0.954 41 H 0.095 0.905 42 H 0.157 0.843 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.681 13.333 -1.137 13.487 hybrid contribution 0.184 -0.874 0.673 1.118 sum -1.497 12.460 -0.463 12.558 Atomic orbital electron populations 1.23022 0.79140 1.03989 1.00554 1.85852 1.21027 1.27272 1.91040 1.20085 0.93262 0.84561 1.16848 1.21044 0.98890 0.91640 1.02069 1.20699 0.92655 0.97480 1.26050 1.18849 0.88728 0.87217 0.91455 1.44110 1.07614 1.01580 1.83393 1.21308 0.94089 0.81493 1.00639 1.21646 0.93824 0.95026 0.91789 0.94580 1.21566 0.97856 0.92185 1.02942 1.21563 0.97342 0.98102 0.98489 1.21594 0.98701 0.95859 0.99094 1.22014 0.93449 0.91688 1.00319 1.60340 1.21962 1.06010 1.44426 1.68224 1.36349 0.95802 1.26549 1.18167 0.86742 0.91598 0.90739 1.19697 0.92496 0.93140 1.43412 0.89890 1.26883 0.99299 1.00439 0.92564 1.70174 1.11739 1.27156 1.28450 0.85199 0.77215 0.77800 0.79298 1.18882 1.18975 1.18298 0.93429 0.87082 0.93479 0.85054 0.86319 0.77672 0.92716 0.92318 0.91253 0.90214 0.92142 0.90089 0.90053 0.91724 0.95386 0.90456 0.84284 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.83 113.37 1.11 2.07 16 2 O -0.34 -16.23 9.62 -89.30 -0.86 -17.09 16 3 C -0.10 -5.27 6.74 23.23 0.16 -5.11 16 4 C -0.11 -5.20 9.12 22.51 0.21 -5.00 16 5 C -0.34 -15.81 9.33 22.70 0.21 -15.59 16 6 C 0.38 18.71 7.65 133.45 1.02 19.73 16 7 N -0.73 -29.37 5.42 -344.86 -1.87 -31.24 16 8 C 0.15 4.64 4.58 86.38 0.40 5.03 16 9 C 0.09 2.20 2.67 44.94 0.12 2.32 16 10 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 11 C -0.11 -2.11 5.37 30.65 0.16 -1.95 16 12 C -0.12 -1.92 6.00 30.68 0.18 -1.74 16 13 C -0.11 -1.97 6.09 30.64 0.19 -1.78 16 14 C 0.05 1.14 6.55 86.32 0.57 1.70 16 15 N -0.69 -18.17 6.50 -491.70 -3.20 -21.36 16 16 N -0.55 -31.20 7.99 -186.18 -1.49 -32.69 16 17 C 0.26 15.06 6.53 40.24 0.26 15.32 16 18 C -0.46 -26.33 8.92 23.36 0.21 -26.12 16 19 H 0.08 4.71 7.34 -2.91 -0.02 4.69 16 20 C 0.03 1.58 5.47 85.28 0.47 2.05 16 21 N -0.75 -41.16 11.57 21.84 0.25 -40.91 16 22 Si 0.98 39.91 29.57 68.60 2.03 41.94 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 H 0.05 1.48 7.70 -2.39 -0.02 1.47 16 27 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 28 H 0.05 1.47 7.68 -2.39 -0.02 1.46 16 29 H 0.13 5.09 6.43 -2.91 -0.02 5.07 16 30 H 0.12 4.73 6.67 -2.91 -0.02 4.71 16 31 H 0.39 15.74 7.23 -92.71 -0.67 15.07 16 32 H 0.05 1.76 7.91 -2.39 -0.02 1.74 16 33 H 0.06 1.77 7.92 -2.38 -0.02 1.75 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.34 9.94 7.07 -89.69 -0.63 9.31 16 43 H 0.28 13.69 8.30 -92.70 -0.77 12.92 16 Total: -1.00 -67.69 342.51 -0.15 -67.84 By element: Atomic # 1 Polarization: 42.86 SS G_CDS: -0.28 Total: 42.58 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 5.26 Total: -9.07 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -6.30 Total: -126.20 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.86 Total: -17.09 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -67.69 -0.15 -67.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171329302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.168 kcal (2) G-P(sol) polarization free energy of solvation -67.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds