Wall clock time and date at job start Tue Mar 31 2020 07:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35697 * 116.99730 * 2 1 4 4 C 1.39267 * 120.13542 * 179.97438 * 3 2 1 5 5 C 1.38638 * 117.91911 * 180.02562 * 4 3 2 6 6 C 1.38757 * 118.01943 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.01160 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47342 * 95.02496 * 7 6 5 9 9 C 1.46899 * 110.99913 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47342 * 274.99462 * 9 8 7 11 11 C 1.52997 * 109.47178 * 300.00475 * 10 9 8 12 12 C 1.52995 * 109.47100 * 299.99600 * 11 10 9 13 13 C 1.50705 * 109.47194 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99946 * 239.99835 * 13 12 11 15 15 C 1.37881 * 119.99606 * 59.99960 * 13 12 11 16 16 N 1.31506 * 120.00097 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99590 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47109 * 60.00322 * 17 15 13 19 19 H 1.48502 * 109.46833 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47144 * 300.00431 * 17 15 13 21 21 C 1.52997 * 109.47112 * 60.00325 * 12 11 10 22 22 C 1.53002 * 109.47167 * 299.99743 * 21 12 11 23 23 N 1.31808 * 119.97654 * 0.02562 * 6 5 4 24 24 N 1.28354 * 122.26004 * 359.97438 * 23 6 5 25 25 H 1.09000 * 109.46799 * 60.00370 * 1 2 3 26 26 H 1.08991 * 109.47046 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46950 * 300.00170 * 1 2 3 28 28 H 1.08007 * 121.04418 * 359.97438 * 4 3 2 29 29 H 1.08008 * 120.98826 * 180.02562 * 5 4 3 30 30 H 1.09006 * 109.47110 * 215.02082 * 7 6 5 31 31 H 1.08996 * 109.47146 * 335.02154 * 7 6 5 32 32 H 1.00895 * 110.99712 * 56.04003 * 8 7 6 33 33 H 1.09001 * 109.47142 * 34.99996 * 9 8 7 34 34 H 1.09004 * 109.46998 * 60.00238 * 10 9 8 35 35 H 1.08996 * 109.47485 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.46823 * 179.97438 * 11 10 9 37 37 H 1.09006 * 109.47232 * 60.00210 * 11 10 9 38 38 H 1.08997 * 109.47396 * 299.99859 * 12 11 10 39 39 H 0.97009 * 119.99695 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.47332 * 180.02562 * 21 12 11 41 41 H 1.08996 * 109.47457 * 60.00068 * 21 12 11 42 42 H 1.08996 * 109.47197 * 300.00484 * 22 21 12 43 43 H 1.09003 * 109.47286 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 3.4356 1.2853 0.0005 5 6 4.0167 2.5441 0.0011 6 6 3.1778 3.6493 0.0005 7 6 3.7615 5.0387 0.0016 8 7 3.8410 5.5376 -1.3778 9 6 4.4061 6.8930 -1.4156 10 6 3.2935 7.9163 -1.1794 11 6 2.2312 7.7759 -2.2714 12 6 2.8701 8.0240 -3.6393 13 6 1.8236 7.8864 -4.7150 14 1 1.9401 7.1432 -5.4898 15 6 0.7173 8.7094 -4.7098 16 7 0.5756 9.6147 -3.7665 17 14 -0.5795 8.5393 -6.0435 18 1 -1.1514 7.1693 -6.0060 19 1 -1.6594 9.5323 -5.8134 20 1 0.0410 8.7805 -7.3709 21 6 3.9827 7.0008 -3.8756 22 6 5.0451 7.1411 -2.7836 23 7 1.8702 3.4836 0.0000 24 7 1.3270 2.3206 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.0424 0.3918 0.0014 29 1 5.0905 2.6608 0.0011 30 1 3.1257 5.6995 0.5909 31 1 4.7606 5.0127 0.4367 32 1 2.9368 5.5105 -1.8247 33 1 5.1629 6.9930 -0.6376 34 1 2.8382 7.7395 -0.2048 35 1 3.7127 8.9220 -1.2079 36 1 1.4383 8.5046 -2.1028 37 1 1.8118 6.7702 -2.2433 38 1 3.2893 9.0297 -3.6674 39 1 -0.2025 10.1939 -3.7631 40 1 4.4382 7.1778 -4.8500 41 1 3.5634 5.9951 -3.8476 42 1 5.4643 8.1468 -2.8116 43 1 5.8375 6.4118 -2.9517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:10 Heat of formation + Delta-G solvation = 7.725917 kcal Electronic energy + Delta-G solvation = -23330.659590 eV Core-core repulsion = 19990.131401 eV Total energy + Delta-G solvation = -3340.528189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31963 -38.84227 -38.31283 -34.80272 -33.32989 -32.65654 -31.19540 -29.59637 -28.78873 -27.74110 -25.85103 -24.47505 -24.05660 -22.53881 -21.44419 -20.68099 -18.76554 -18.03444 -17.79703 -16.43172 -16.37693 -16.24952 -15.17308 -14.82172 -14.69114 -14.43264 -14.32084 -13.90730 -13.68191 -13.40836 -12.88720 -12.49391 -12.39819 -12.22542 -12.03512 -11.72578 -11.54575 -11.46606 -11.25365 -11.00915 -10.70530 -10.60963 -10.34413 -10.11959 -10.01730 -9.86087 -9.66241 -9.27486 -9.16182 -8.85835 -8.59494 -8.21777 -7.96651 -5.91039 -3.96739 0.67567 0.89226 2.72437 3.36838 3.41149 3.41538 3.44303 3.95083 4.24490 4.45880 4.50248 4.70344 4.77900 4.94741 5.02664 5.09746 5.30336 5.36423 5.38802 5.44322 5.51695 5.63284 5.67568 5.78767 5.90159 6.06664 6.20463 6.29210 6.43332 6.51331 6.62334 6.72842 6.82331 6.84348 7.02907 7.25746 7.26388 7.41581 7.58644 7.77800 7.82232 8.10430 8.23448 8.55804 8.61973 9.07438 9.67809 11.14294 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014662 B = 0.004127 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.190776 B = 6783.024786 C = 8061.340965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.305 6.305 3 C 0.254 3.746 4 C -0.138 4.138 5 C -0.065 4.065 6 C 0.051 3.949 7 C 0.114 3.886 8 N -0.680 5.680 9 C 0.093 3.907 10 C -0.149 4.149 11 C -0.108 4.108 12 C 0.050 3.950 13 C -0.512 4.512 14 H 0.052 0.948 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.108 4.108 22 C -0.102 4.102 23 N -0.196 5.196 24 N -0.298 5.298 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.357 0.643 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.032 0.968 38 H 0.023 0.977 39 H 0.259 0.741 40 H 0.042 0.958 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.100 -15.094 10.644 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.209 6.209 3 C 0.069 3.931 4 C -0.168 4.168 5 C -0.094 4.094 6 C -0.097 4.097 7 C -0.017 4.017 8 N -0.315 5.315 9 C -0.016 4.016 10 C -0.188 4.188 11 C -0.146 4.146 12 C 0.031 3.969 13 C -0.550 4.550 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.715 3.285 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.145 4.145 22 C -0.140 4.140 23 N -0.040 5.040 24 N -0.153 5.153 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.081 0.919 28 H 0.172 0.828 29 H 0.175 0.825 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.180 0.820 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.051 0.949 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.120 -14.916 10.567 19.277 hybrid contribution -0.424 -0.180 -0.384 0.600 sum 5.697 -15.096 10.183 19.080 Atomic orbital electron populations 1.22992 0.76608 1.03347 1.03085 1.86209 1.23371 1.23550 1.87760 1.21516 0.91013 0.87232 0.93386 1.21527 0.92304 0.99890 1.03079 1.22183 1.02368 0.90925 0.93943 1.22758 0.91165 0.97772 0.98016 1.20695 0.99634 0.88630 0.92739 1.60849 1.32662 1.24271 1.13722 1.21519 0.95835 0.86528 0.97736 1.22263 0.98167 0.99099 0.99269 1.21593 0.97898 1.00549 0.94572 1.18636 0.91908 0.93758 0.92571 1.21221 1.05441 1.17877 1.10481 0.92946 1.24950 0.97987 0.95258 0.95712 1.69861 1.29189 1.21059 1.32919 0.86739 0.81451 0.77765 0.82513 1.20378 1.21388 1.20391 1.21581 0.96426 1.00614 0.95903 1.21515 0.98016 0.99841 0.94667 1.72766 1.11144 1.13332 1.06767 1.73083 1.31857 0.94210 1.16190 0.91725 0.88253 0.91947 0.82790 0.82456 0.92901 0.89503 0.81972 0.91975 0.94068 0.92277 0.89039 0.94914 0.95928 0.93127 0.93910 0.92977 0.92610 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.40 101.05 1.05 1.37 16 2 O -0.30 -3.51 10.49 -18.79 -0.20 -3.71 16 3 C 0.25 3.29 7.57 -16.95 -0.13 3.17 16 4 C -0.14 -1.44 10.16 -39.05 -0.40 -1.84 16 5 C -0.07 -0.68 9.85 -39.24 -0.39 -1.07 16 6 C 0.05 0.68 6.38 -82.41 -0.53 0.16 16 7 C 0.11 1.49 5.82 -4.97 -0.03 1.46 16 8 N -0.68 -10.67 5.75 -107.99 -0.62 -11.29 16 9 C 0.09 1.50 2.86 -67.71 -0.19 1.31 16 10 C -0.15 -2.78 5.52 -26.74 -0.15 -2.93 16 11 C -0.11 -2.50 4.73 -26.74 -0.13 -2.63 16 12 C 0.05 1.22 2.10 -91.77 -0.19 1.03 16 13 C -0.51 -14.22 8.56 -34.44 -0.29 -14.51 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 16 N -0.89 -25.69 11.32 55.43 0.63 -25.06 16 17 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.11 -2.24 4.90 -26.73 -0.13 -2.37 16 22 C -0.10 -1.76 5.64 -26.73 -0.15 -1.91 16 23 N -0.20 -3.19 11.42 33.60 0.38 -2.80 16 24 N -0.30 -4.61 10.41 30.50 0.32 -4.29 16 25 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 28 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.16 1.13 8.06 -52.48 -0.42 0.70 16 30 H 0.05 0.73 7.44 -51.93 -0.39 0.35 16 31 H 0.09 0.89 7.97 -51.93 -0.41 0.48 16 32 H 0.36 6.63 5.55 -39.29 -0.22 6.41 16 33 H 0.06 0.87 7.80 -51.93 -0.41 0.46 16 34 H 0.04 0.72 7.45 -51.93 -0.39 0.34 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 37 H 0.03 0.77 6.26 -51.93 -0.32 0.44 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 1.11 7.21 -51.93 -0.37 0.73 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -30.65 343.02 -7.68 -38.33 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.59 Total: 4.07 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -1.75 Total: -17.14 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.71 Total: -43.45 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.20 Total: -3.71 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.65 -7.68 -38.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.056 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds