Wall clock time and date at job start Tue Mar 31 2020 07:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35697 * 116.99730 * 2 1 4 4 C 1.39267 * 120.13542 * 179.97438 * 3 2 1 5 5 C 1.38638 * 117.91911 * 180.02562 * 4 3 2 6 6 C 1.38757 * 118.01943 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.01160 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47342 * 95.02496 * 7 6 5 9 9 C 1.46899 * 110.99913 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47342 * 274.99462 * 9 8 7 11 11 C 1.52997 * 109.47178 * 300.00475 * 10 9 8 12 12 C 1.52995 * 109.47100 * 299.99600 * 11 10 9 13 13 C 1.50705 * 109.47194 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99946 * 239.99835 * 13 12 11 15 15 C 1.37881 * 119.99606 * 59.99960 * 13 12 11 16 16 N 1.31506 * 120.00097 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99590 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47109 * 60.00322 * 17 15 13 19 19 H 1.48502 * 109.46833 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47144 * 300.00431 * 17 15 13 21 21 C 1.52997 * 109.47112 * 60.00325 * 12 11 10 22 22 C 1.53002 * 109.47167 * 299.99743 * 21 12 11 23 23 N 1.31808 * 119.97654 * 0.02562 * 6 5 4 24 24 N 1.28354 * 122.26004 * 359.97438 * 23 6 5 25 25 H 1.09000 * 109.46799 * 60.00370 * 1 2 3 26 26 H 1.08991 * 109.47046 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46950 * 300.00170 * 1 2 3 28 28 H 1.08007 * 121.04418 * 359.97438 * 4 3 2 29 29 H 1.08008 * 120.98826 * 180.02562 * 5 4 3 30 30 H 1.09006 * 109.47110 * 215.02082 * 7 6 5 31 31 H 1.08996 * 109.47146 * 335.02154 * 7 6 5 32 32 H 1.00895 * 110.99712 * 56.04003 * 8 7 6 33 33 H 1.09001 * 109.47142 * 34.99996 * 9 8 7 34 34 H 1.09004 * 109.46998 * 60.00238 * 10 9 8 35 35 H 1.08996 * 109.47485 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.46823 * 179.97438 * 11 10 9 37 37 H 1.09006 * 109.47232 * 60.00210 * 11 10 9 38 38 H 1.08997 * 109.47396 * 299.99859 * 12 11 10 39 39 H 0.97009 * 119.99695 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.47332 * 180.02562 * 21 12 11 41 41 H 1.08996 * 109.47457 * 60.00068 * 21 12 11 42 42 H 1.08996 * 109.47197 * 300.00484 * 22 21 12 43 43 H 1.09003 * 109.47286 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 3.4356 1.2853 0.0005 5 6 4.0167 2.5441 0.0011 6 6 3.1778 3.6493 0.0005 7 6 3.7615 5.0387 0.0016 8 7 3.8410 5.5376 -1.3778 9 6 4.4061 6.8930 -1.4156 10 6 3.2935 7.9163 -1.1794 11 6 2.2312 7.7759 -2.2714 12 6 2.8701 8.0240 -3.6393 13 6 1.8236 7.8864 -4.7150 14 1 1.9401 7.1432 -5.4898 15 6 0.7173 8.7094 -4.7098 16 7 0.5756 9.6147 -3.7665 17 14 -0.5795 8.5393 -6.0435 18 1 -1.1514 7.1693 -6.0060 19 1 -1.6594 9.5323 -5.8134 20 1 0.0410 8.7805 -7.3709 21 6 3.9827 7.0008 -3.8756 22 6 5.0451 7.1411 -2.7836 23 7 1.8702 3.4836 0.0000 24 7 1.3270 2.3206 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.0424 0.3918 0.0014 29 1 5.0905 2.6608 0.0011 30 1 3.1257 5.6995 0.5909 31 1 4.7606 5.0127 0.4367 32 1 2.9368 5.5105 -1.8247 33 1 5.1629 6.9930 -0.6376 34 1 2.8382 7.7395 -0.2048 35 1 3.7127 8.9220 -1.2079 36 1 1.4383 8.5046 -2.1028 37 1 1.8118 6.7702 -2.2433 38 1 3.2893 9.0297 -3.6674 39 1 -0.2025 10.1939 -3.7631 40 1 4.4382 7.1778 -4.8500 41 1 3.5634 5.9951 -3.8476 42 1 5.4643 8.1468 -2.8116 43 1 5.8375 6.4118 -2.9517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:10 Heat of formation + Delta-G solvation = -14.097808 kcal Electronic energy + Delta-G solvation = -23331.605937 eV Core-core repulsion = 19990.131401 eV Total energy + Delta-G solvation = -3341.474536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.25401 -40.08507 -39.43717 -36.22919 -34.63938 -33.97463 -32.57689 -31.23490 -30.31128 -28.56308 -27.12226 -26.24393 -24.95571 -23.55844 -23.04367 -22.40036 -19.67233 -19.55278 -18.70913 -18.38058 -17.54346 -17.32104 -16.59315 -16.21790 -15.76330 -15.63814 -15.31597 -15.09077 -14.94356 -14.85095 -14.33300 -13.92591 -13.76775 -13.66206 -13.13707 -13.03513 -12.93667 -12.81981 -12.68700 -12.52227 -12.47952 -12.12292 -11.87361 -11.71255 -11.69176 -11.20238 -11.10926 -10.65292 -10.58963 -10.50592 -10.29999 -10.13522 -9.23459 -8.06525 -6.19929 -0.18030 -0.02837 1.38176 1.39754 1.46871 1.90296 2.42787 2.45632 3.01440 3.19419 3.34830 3.54922 3.67138 3.99136 4.07475 4.12365 4.21569 4.29398 4.33925 4.36225 4.52428 4.55915 4.67109 4.70206 4.73208 4.76420 4.91228 4.96491 5.01428 5.04100 5.13051 5.20298 5.31232 5.32737 5.47411 5.54779 5.65071 5.75057 5.95539 6.08799 6.17413 6.28283 6.38350 6.46152 6.93469 7.47746 7.65472 8.96378 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014662 B = 0.004127 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.190776 B = 6783.024786 C = 8061.340965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.307 6.307 3 C 0.241 3.759 4 C -0.130 4.130 5 C -0.055 4.055 6 C 0.041 3.959 7 C 0.115 3.885 8 N -0.678 5.678 9 C 0.101 3.899 10 C -0.141 4.141 11 C -0.097 4.097 12 C 0.048 3.952 13 C -0.536 4.536 14 H 0.046 0.954 15 C 0.014 3.986 16 N -0.915 5.915 17 Si 0.946 3.054 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.270 1.270 21 C -0.099 4.099 22 C -0.096 4.096 23 N -0.245 5.245 24 N -0.334 5.334 25 H 0.050 0.950 26 H 0.133 0.867 27 H 0.057 0.943 28 H 0.191 0.809 29 H 0.200 0.800 30 H 0.040 0.960 31 H 0.127 0.873 32 H 0.337 0.663 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.021 0.979 38 H -0.008 1.008 39 H 0.258 0.742 40 H 0.036 0.964 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.470 -16.921 11.333 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.211 6.211 3 C 0.054 3.946 4 C -0.159 4.159 5 C -0.083 4.083 6 C -0.109 4.109 7 C -0.015 4.015 8 N -0.311 5.311 9 C -0.008 4.008 10 C -0.180 4.180 11 C -0.135 4.135 12 C 0.030 3.970 13 C -0.574 4.574 14 H 0.064 0.936 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.772 3.228 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.195 1.195 21 C -0.137 4.137 22 C -0.134 4.134 23 N -0.088 5.088 24 N -0.189 5.189 25 H 0.069 0.931 26 H 0.151 0.849 27 H 0.076 0.924 28 H 0.208 0.792 29 H 0.217 0.783 30 H 0.058 0.942 31 H 0.145 0.855 32 H 0.157 0.843 33 H 0.120 0.880 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.010 0.990 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.494 -16.749 11.261 21.897 hybrid contribution -1.180 0.343 -0.603 1.368 sum 7.314 -16.406 10.659 20.887 Atomic orbital electron populations 1.23161 0.75701 1.05257 1.02182 1.86216 1.24343 1.22919 1.87638 1.21911 0.92367 0.87054 0.93245 1.21996 0.91344 1.01400 1.01196 1.22607 1.03962 0.89697 0.92010 1.22982 0.90849 0.98962 0.98060 1.20858 1.01489 0.88105 0.91044 1.60870 1.31232 1.23680 1.15320 1.21503 0.95365 0.85714 0.98243 1.22165 0.97876 1.00137 0.97822 1.21323 0.98158 0.98404 0.95655 1.18599 0.92536 0.93251 0.92633 1.21650 1.06668 1.17742 1.11324 0.93602 1.25686 0.99960 0.95095 0.97742 1.70009 1.29635 1.21615 1.34223 0.85804 0.79085 0.77694 0.80234 1.20200 1.20863 1.19530 1.21424 0.96239 0.98658 0.97360 1.21479 0.97276 1.00974 0.93666 1.72649 1.13119 1.14119 1.08871 1.72937 1.33138 0.94832 1.18017 0.93080 0.84888 0.92447 0.79170 0.78303 0.94226 0.85516 0.84271 0.87993 0.93042 0.92647 0.93108 0.96064 0.99026 0.93258 0.94495 0.93666 0.92233 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.40 113.37 1.18 1.75 16 2 O -0.31 -6.76 10.49 -90.17 -0.95 -7.71 16 3 C 0.24 6.02 7.57 84.87 0.64 6.66 16 4 C -0.13 -2.32 10.16 22.61 0.23 -2.09 16 5 C -0.05 -0.94 9.85 22.49 0.22 -0.72 16 6 C 0.04 1.02 6.38 42.69 0.27 1.30 16 7 C 0.12 2.70 5.82 85.56 0.50 3.20 16 8 N -0.68 -19.83 5.75 -495.56 -2.85 -22.68 16 9 C 0.10 2.98 2.86 44.92 0.13 3.11 16 10 C -0.14 -5.19 5.52 30.59 0.17 -5.02 16 11 C -0.10 -4.66 4.73 30.59 0.14 -4.51 16 12 C 0.05 2.45 2.10 -11.54 -0.02 2.43 16 13 C -0.54 -30.73 8.56 25.60 0.22 -30.51 16 14 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 15 C 0.01 0.78 5.30 84.66 0.45 1.23 16 16 N -0.92 -54.62 11.32 21.45 0.24 -54.38 16 17 Si 0.95 45.55 29.54 68.60 2.03 47.57 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 19 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 20 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 21 C -0.10 -4.11 4.90 30.59 0.15 -3.96 16 22 C -0.10 -3.06 5.64 30.60 0.17 -2.88 16 23 N -0.25 -8.04 11.42 -47.60 -0.54 -8.59 16 24 N -0.33 -10.53 10.41 -170.23 -1.77 -12.30 16 25 H 0.05 1.04 8.11 -2.39 -0.02 1.02 16 26 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.07 8.11 -2.39 -0.02 1.05 16 28 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 29 H 0.20 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.04 1.04 7.44 -2.38 -0.02 1.02 16 31 H 0.13 1.95 7.97 -2.39 -0.02 1.93 16 32 H 0.34 12.44 5.55 -89.70 -0.50 11.94 16 33 H 0.10 2.31 7.80 -2.39 -0.02 2.29 16 34 H 0.05 1.77 7.45 -2.39 -0.02 1.76 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 2.84 6.07 -2.39 -0.01 2.82 16 37 H 0.02 1.04 6.26 -2.38 -0.01 1.02 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.04 1.92 7.21 -2.39 -0.02 1.90 16 42 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -70.88 343.02 1.11 -69.76 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.51 Total: 18.36 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 4.45 Total: -30.03 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -4.92 Total: -97.95 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.95 Total: -7.71 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -70.88 1.11 -69.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.666 kcal (2) G-P(sol) polarization free energy of solvation -70.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds