Wall clock time and date at job start Tue Mar 31 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47210 * 2 1 4 4 N 1.46499 * 109.47267 * 120.00147 * 2 1 3 5 5 N 1.28443 * 125.19129 * 305.63399 * 4 2 1 6 6 C 1.30858 * 110.92909 * 180.27869 * 5 4 2 7 7 C 1.39679 * 107.86082 * 359.70840 * 6 5 4 8 8 C 1.36597 * 125.19242 * 125.41694 * 4 2 1 9 9 C 1.47164 * 126.88354 * 0.02562 * 8 4 2 10 10 O 1.21634 * 119.99896 * 5.22649 * 9 8 4 11 11 N 1.34776 * 120.00181 * 185.22556 * 9 8 4 12 12 C 1.46504 * 119.99676 * 174.95181 * 11 9 8 13 13 H 1.08997 * 109.41194 * 324.99637 * 12 11 9 14 14 C 1.52951 * 109.41362 * 84.85917 * 12 11 9 15 15 C 1.53093 * 109.47731 * 183.70095 * 14 12 11 16 16 C 1.51266 * 108.50045 * 305.32064 * 15 14 12 17 17 C 1.37874 * 120.85006 * 231.32842 * 16 15 14 18 18 N 1.31512 * 119.99695 * 180.02562 * 17 16 15 19 19 Si 1.86799 * 120.00040 * 0.02562 * 17 16 15 20 20 H 1.48500 * 109.46945 * 89.99774 * 19 17 16 21 21 H 1.48498 * 109.46973 * 209.99542 * 19 17 16 22 22 H 1.48497 * 109.47185 * 329.99865 * 19 17 16 23 23 C 1.51268 * 118.29515 * 51.35063 * 16 15 14 24 24 C 1.52960 * 109.40719 * 205.13900 * 12 11 9 25 25 H 1.09007 * 109.46582 * 300.00087 * 1 2 3 26 26 H 1.09000 * 109.47299 * 59.99978 * 1 2 3 27 27 H 1.09004 * 109.46870 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46412 * 240.00009 * 2 1 3 29 29 H 1.09004 * 109.47384 * 59.99908 * 3 2 1 30 30 H 1.08999 * 109.47112 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47431 * 300.00053 * 3 2 1 32 32 H 1.08002 * 126.07107 * 179.75211 * 6 5 4 33 33 H 1.07994 * 127.31677 * 179.97438 * 7 6 5 34 34 H 0.96993 * 120.00066 * 354.94971 * 11 9 8 35 35 H 1.08999 * 109.48744 * 303.60658 * 14 12 11 36 36 H 1.09007 * 109.48335 * 63.65350 * 14 12 11 37 37 H 1.09001 * 109.64068 * 185.61597 * 15 14 12 38 38 H 1.09005 * 109.80619 * 65.11853 * 15 14 12 39 39 H 0.97008 * 119.99771 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.62356 * 188.93865 * 23 16 15 41 41 H 1.08996 * 109.62631 * 68.37203 * 23 16 15 42 42 H 1.09000 * 109.48523 * 296.34716 * 24 12 11 43 43 H 1.09002 * 109.48374 * 56.38803 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.6886 -0.4027 2.4036 6 6 2.2930 -1.1924 3.2542 7 6 3.0860 -2.0811 2.5247 8 6 2.8908 -1.7418 1.1972 9 6 3.5052 -2.3809 0.0227 10 8 3.3240 -1.9164 -1.0868 11 7 4.2688 -3.4808 0.1762 12 6 4.7893 -4.1812 -1.0005 13 1 4.0565 -4.1308 -1.8057 14 6 6.0898 -3.5161 -1.4541 15 6 6.5863 -4.1879 -2.7370 16 6 6.7032 -5.6750 -2.4858 17 6 7.8655 -6.3534 -2.7854 18 7 7.9486 -7.6465 -2.5606 19 14 9.3221 -5.4359 -3.5106 20 1 10.1894 -4.9376 -2.4130 21 1 10.1018 -6.3531 -4.3800 22 1 8.8330 -4.2876 -4.3152 23 6 5.5120 -6.3987 -1.8980 24 6 5.0540 -5.6452 -0.6448 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 2.1954 -1.1627 4.3294 33 1 3.7177 -2.8659 2.9139 34 1 4.4737 -3.8086 1.0658 35 1 5.9095 -2.4584 -1.6461 36 1 6.8433 -3.6208 -0.6734 37 1 7.5621 -3.7845 -3.0079 38 1 5.8784 -4.0078 -3.5461 39 1 8.7665 -8.1238 -2.7711 40 1 5.7975 -7.4158 -1.6297 41 1 4.7022 -6.4231 -2.6271 42 1 5.8320 -5.6994 0.1167 43 1 4.1389 -6.0976 -0.2628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189373309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:17 Heat of formation + Delta-G solvation = 19.162003 kcal Electronic energy + Delta-G solvation = -23624.116628 eV Core-core repulsion = 20284.084345 eV Total energy + Delta-G solvation = -3340.032283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.59786 -39.37066 -36.82127 -35.84009 -33.81473 -31.90164 -30.62766 -30.39515 -29.70451 -27.52776 -27.27923 -23.86356 -22.92876 -22.04726 -21.58040 -20.61622 -19.86046 -19.23148 -17.77358 -16.24283 -16.00533 -15.93577 -15.46988 -14.91486 -14.52265 -14.35617 -14.28825 -14.01505 -13.25608 -13.17073 -13.06960 -12.77498 -12.46363 -12.35927 -12.31020 -12.11455 -11.77570 -11.59750 -11.41558 -11.07276 -10.85409 -10.80168 -10.74312 -10.20724 -10.02938 -9.82747 -9.61660 -9.26956 -9.10454 -9.04439 -8.89155 -8.49915 -8.38753 -6.13631 -4.04444 1.29915 2.32670 2.58222 3.25153 3.33993 3.34925 3.37139 3.42553 4.34769 4.36452 4.67999 4.69615 4.80838 5.03789 5.08928 5.14781 5.30758 5.38847 5.48502 5.49289 5.62902 5.66846 5.69133 5.81870 5.90192 5.95667 6.12678 6.37503 6.43528 6.45900 6.66276 6.68714 6.72627 6.84516 6.91485 7.05528 7.16515 7.40151 7.61131 7.64781 7.68799 7.81887 8.04765 8.33827 8.34865 8.92752 9.51609 10.95872 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.003615 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.787166 B = 7743.577342 C = 8104.095288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 C -0.157 4.157 4 N -0.250 5.250 5 N -0.280 5.280 6 C -0.008 4.008 7 C -0.194 4.194 8 C -0.032 4.032 9 C 0.584 3.416 10 O -0.544 6.544 11 N -0.704 5.704 12 C 0.156 3.844 13 H 0.080 0.920 14 C -0.114 4.114 15 C -0.013 4.013 16 C -0.490 4.490 17 C 0.077 3.923 18 N -0.890 5.890 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.267 1.267 23 C 0.013 3.987 24 C -0.115 4.115 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.137 0.863 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.184 0.816 33 H 0.159 0.841 34 H 0.398 0.602 35 H 0.038 0.962 36 H 0.052 0.948 37 H 0.031 0.969 38 H 0.019 0.981 39 H 0.264 0.736 40 H 0.062 0.938 41 H 0.006 0.994 42 H 0.056 0.944 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.943 12.345 9.264 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.026 3.974 3 C -0.215 4.215 4 N -0.038 5.038 5 N -0.112 5.112 6 C -0.184 4.184 7 C -0.223 4.223 8 C -0.161 4.161 9 C 0.369 3.631 10 O -0.423 6.423 11 N -0.353 5.353 12 C 0.054 3.946 13 H 0.098 0.902 14 C -0.153 4.153 15 C -0.051 4.051 16 C -0.509 4.509 17 C -0.126 4.126 18 N -0.527 5.527 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.192 1.192 23 C -0.024 4.024 24 C -0.153 4.153 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.155 0.845 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.201 0.799 33 H 0.177 0.823 34 H 0.232 0.768 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.025 0.975 42 H 0.075 0.925 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.758 13.453 8.230 19.672 hybrid contribution 1.579 -0.411 0.348 1.668 sum -10.180 13.041 8.578 18.636 Atomic orbital electron populations 1.22098 0.92900 1.03093 1.03446 1.22113 0.95897 0.94554 0.84847 1.22102 1.02098 0.94036 1.03283 1.45981 1.30246 1.22065 1.05548 1.73084 1.23202 1.24974 0.89951 1.23519 0.99176 0.95906 0.99811 1.22254 1.05208 1.03976 0.90867 1.21632 1.01919 0.96472 0.96076 1.16968 0.78891 0.80793 0.86426 1.90715 1.62352 1.63296 1.25894 1.46166 1.50483 1.27219 1.11456 1.21153 0.95821 0.92009 0.85596 0.90210 1.21892 0.95691 0.97406 1.00298 1.19690 0.96685 0.95916 0.92834 1.20042 0.98372 0.91387 1.41122 1.24833 0.98027 0.94733 0.94998 1.69831 1.27717 1.07610 1.47577 0.86661 0.82420 0.79705 0.79608 1.20417 1.21627 1.19162 1.19336 0.94632 0.97541 0.90938 1.21955 0.98799 0.92777 1.01792 0.91160 0.90314 0.92026 0.84510 0.91451 0.91902 0.90262 0.79943 0.82319 0.76787 0.94309 0.92914 0.95050 0.96215 0.92558 0.91982 0.97515 0.92525 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.30 37.16 0.35 -1.19 16 2 C 0.13 1.50 3.53 -67.93 -0.24 1.26 16 3 C -0.16 -1.60 9.45 37.15 0.35 -1.25 16 4 N -0.25 -3.39 3.09 -50.69 -0.16 -3.55 16 5 N -0.28 -3.65 11.52 30.59 0.35 -3.30 16 6 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 7 C -0.19 -2.25 10.50 -38.98 -0.41 -2.66 16 8 C -0.03 -0.46 6.96 -82.06 -0.57 -1.03 16 9 C 0.58 9.51 7.75 -12.64 -0.10 9.42 16 10 O -0.54 -10.26 14.04 5.25 0.07 -10.19 16 11 N -0.70 -10.95 5.06 -55.01 -0.28 -11.23 16 12 C 0.16 2.95 2.32 -67.97 -0.16 2.79 16 13 H 0.08 1.65 7.65 -51.93 -0.40 1.25 16 14 C -0.11 -2.34 5.49 -26.71 -0.15 -2.48 16 15 C -0.01 -0.31 5.59 -27.56 -0.15 -0.46 16 16 C -0.49 -12.59 5.51 -98.93 -0.55 -13.13 16 17 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 18 N -0.89 -25.01 12.73 55.43 0.71 -24.31 16 19 Si 0.89 20.88 27.27 -169.99 -4.64 16.25 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.15 6.46 56.52 0.37 -5.78 16 23 C 0.01 0.32 5.97 -27.49 -0.16 0.16 16 24 C -0.11 -2.25 5.40 -26.63 -0.14 -2.39 16 25 H 0.07 0.68 8.09 -51.92 -0.42 0.26 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.14 1.89 5.38 -51.93 -0.28 1.61 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.16 1.41 7.59 -52.49 -0.40 1.01 16 34 H 0.40 5.08 7.64 -40.82 -0.31 4.77 16 35 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 36 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 37 H 0.03 0.73 4.78 -51.93 -0.25 0.48 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 41 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -29.90 343.69 -7.66 -37.56 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.66 Total: 2.90 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -2.24 Total: -9.31 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.62 Total: -42.39 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.07 Total: -10.19 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.64 Total: 16.25 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.90 -7.66 -37.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189373309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.720 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds