Wall clock time and date at job start Tue Mar 31 2020 06:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47210 * 2 1 4 4 N 1.46499 * 109.47267 * 120.00147 * 2 1 3 5 5 N 1.28443 * 125.19129 * 305.63399 * 4 2 1 6 6 C 1.30858 * 110.92909 * 180.27869 * 5 4 2 7 7 C 1.39679 * 107.86082 * 359.70840 * 6 5 4 8 8 C 1.36597 * 125.19242 * 125.41694 * 4 2 1 9 9 C 1.47164 * 126.88354 * 0.02562 * 8 4 2 10 10 O 1.21634 * 119.99896 * 5.22649 * 9 8 4 11 11 N 1.34776 * 120.00181 * 185.22556 * 9 8 4 12 12 C 1.46504 * 119.99676 * 174.95181 * 11 9 8 13 13 H 1.08997 * 109.41194 * 324.99637 * 12 11 9 14 14 C 1.52951 * 109.41362 * 84.85917 * 12 11 9 15 15 C 1.53093 * 109.47731 * 183.70095 * 14 12 11 16 16 C 1.51266 * 108.50045 * 305.32064 * 15 14 12 17 17 C 1.37874 * 120.85006 * 231.32842 * 16 15 14 18 18 N 1.31512 * 119.99695 * 180.02562 * 17 16 15 19 19 Si 1.86799 * 120.00040 * 0.02562 * 17 16 15 20 20 H 1.48500 * 109.46945 * 89.99774 * 19 17 16 21 21 H 1.48498 * 109.46973 * 209.99542 * 19 17 16 22 22 H 1.48497 * 109.47185 * 329.99865 * 19 17 16 23 23 C 1.51268 * 118.29515 * 51.35063 * 16 15 14 24 24 C 1.52960 * 109.40719 * 205.13900 * 12 11 9 25 25 H 1.09007 * 109.46582 * 300.00087 * 1 2 3 26 26 H 1.09000 * 109.47299 * 59.99978 * 1 2 3 27 27 H 1.09004 * 109.46870 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46412 * 240.00009 * 2 1 3 29 29 H 1.09004 * 109.47384 * 59.99908 * 3 2 1 30 30 H 1.08999 * 109.47112 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47431 * 300.00053 * 3 2 1 32 32 H 1.08002 * 126.07107 * 179.75211 * 6 5 4 33 33 H 1.07994 * 127.31677 * 179.97438 * 7 6 5 34 34 H 0.96993 * 120.00066 * 354.94971 * 11 9 8 35 35 H 1.08999 * 109.48744 * 303.60658 * 14 12 11 36 36 H 1.09007 * 109.48335 * 63.65350 * 14 12 11 37 37 H 1.09001 * 109.64068 * 185.61597 * 15 14 12 38 38 H 1.09005 * 109.80619 * 65.11853 * 15 14 12 39 39 H 0.97008 * 119.99771 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.62356 * 188.93865 * 23 16 15 41 41 H 1.08996 * 109.62631 * 68.37203 * 23 16 15 42 42 H 1.09000 * 109.48523 * 296.34716 * 24 12 11 43 43 H 1.09002 * 109.48374 * 56.38803 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.6886 -0.4027 2.4036 6 6 2.2930 -1.1924 3.2542 7 6 3.0860 -2.0811 2.5247 8 6 2.8908 -1.7418 1.1972 9 6 3.5052 -2.3809 0.0227 10 8 3.3240 -1.9164 -1.0868 11 7 4.2688 -3.4808 0.1762 12 6 4.7893 -4.1812 -1.0005 13 1 4.0565 -4.1308 -1.8057 14 6 6.0898 -3.5161 -1.4541 15 6 6.5863 -4.1879 -2.7370 16 6 6.7032 -5.6750 -2.4858 17 6 7.8655 -6.3534 -2.7854 18 7 7.9486 -7.6465 -2.5606 19 14 9.3221 -5.4359 -3.5106 20 1 10.1894 -4.9376 -2.4130 21 1 10.1018 -6.3531 -4.3800 22 1 8.8330 -4.2876 -4.3152 23 6 5.5120 -6.3987 -1.8980 24 6 5.0540 -5.6452 -0.6448 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 2.1954 -1.1627 4.3294 33 1 3.7177 -2.8659 2.9139 34 1 4.4737 -3.8086 1.0658 35 1 5.9095 -2.4584 -1.6461 36 1 6.8433 -3.6208 -0.6734 37 1 7.5621 -3.7845 -3.0079 38 1 5.8784 -4.0078 -3.5461 39 1 8.7665 -8.1238 -2.7711 40 1 5.7975 -7.4158 -1.6297 41 1 4.7022 -6.4231 -2.6271 42 1 5.8320 -5.6994 0.1167 43 1 4.1389 -6.0976 -0.2628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189373309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:16 Heat of formation + Delta-G solvation = 1.000037 kcal Electronic energy + Delta-G solvation = -23624.904190 eV Core-core repulsion = 20284.084345 eV Total energy + Delta-G solvation = -3340.819845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.54629 -40.72949 -38.43430 -36.74671 -35.40418 -33.60292 -31.84338 -31.46133 -31.28134 -28.99170 -28.30456 -25.15479 -23.92802 -23.52161 -23.28739 -21.82265 -21.36706 -20.47692 -18.93367 -17.92517 -17.31168 -17.00583 -16.69646 -16.40101 -15.78087 -15.68681 -15.55163 -14.97232 -14.88325 -14.52787 -14.17696 -14.09729 -13.97476 -13.90286 -13.53842 -13.18692 -13.12481 -12.79320 -12.70015 -12.59137 -12.43481 -12.31085 -11.90960 -11.83378 -11.75211 -11.50678 -11.11854 -10.82438 -10.68235 -10.53332 -10.27925 -10.01433 -9.87580 -8.16926 -6.10781 0.24365 1.35876 1.39072 1.42927 1.50779 1.69390 2.17438 2.20712 2.41516 3.11705 3.48864 3.56489 3.86541 3.98963 4.02988 4.16452 4.17964 4.20831 4.47954 4.56985 4.59420 4.62114 4.70853 4.71418 4.80971 4.86524 4.89234 4.96658 5.06639 5.07497 5.11251 5.16003 5.23396 5.23576 5.53562 5.56061 5.60458 5.66788 5.76539 5.81220 5.82780 6.35031 6.48238 6.94976 7.08067 7.14721 7.47636 8.93622 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.003615 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.787166 B = 7743.577342 C = 8104.095288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.117 3.883 3 C -0.150 4.150 4 N -0.258 5.258 5 N -0.291 5.291 6 C -0.008 4.008 7 C -0.178 4.178 8 C -0.063 4.063 9 C 0.586 3.414 10 O -0.576 6.576 11 N -0.694 5.694 12 C 0.170 3.830 13 H 0.061 0.939 14 C -0.106 4.106 15 C -0.015 4.015 16 C -0.500 4.500 17 C 0.027 3.973 18 N -0.927 5.927 19 Si 0.937 3.063 20 H -0.271 1.271 21 H -0.292 1.292 22 H -0.260 1.260 23 C 0.009 3.991 24 C -0.101 4.101 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.219 0.781 33 H 0.188 0.812 34 H 0.414 0.586 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.031 0.969 38 H 0.013 0.987 39 H 0.264 0.736 40 H 0.035 0.965 41 H -0.002 1.002 42 H 0.060 0.940 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.487 13.884 11.107 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.018 3.982 3 C -0.207 4.207 4 N -0.047 5.047 5 N -0.124 5.124 6 C -0.183 4.183 7 C -0.207 4.207 8 C -0.191 4.191 9 C 0.372 3.628 10 O -0.456 6.456 11 N -0.344 5.344 12 C 0.066 3.934 13 H 0.079 0.921 14 C -0.145 4.145 15 C -0.053 4.053 16 C -0.519 4.519 17 C -0.171 4.171 18 N -0.567 5.567 19 Si 0.763 3.237 20 H -0.197 1.197 21 H -0.219 1.219 22 H -0.185 1.185 23 C -0.029 4.029 24 C -0.139 4.139 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.068 0.932 28 H 0.133 0.867 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.235 0.765 33 H 0.205 0.795 34 H 0.252 0.748 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.017 0.983 42 H 0.079 0.921 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.309 15.004 10.101 21.878 hybrid contribution 1.666 -0.885 -0.200 1.897 sum -10.643 14.119 9.901 20.265 Atomic orbital electron populations 1.22055 0.91315 1.02694 1.04624 1.22193 0.97178 0.94984 0.83882 1.22060 1.00952 0.93223 1.04509 1.46159 1.30379 1.22150 1.06020 1.73087 1.23675 1.25621 0.90012 1.24175 0.98053 0.94841 1.01240 1.22680 1.04472 1.03955 0.89628 1.21499 1.03600 0.97854 0.96151 1.17230 0.78376 0.80461 0.86727 1.90706 1.63347 1.64184 1.27407 1.45811 1.50351 1.27009 1.11216 1.20718 0.94612 0.91680 0.86358 0.92110 1.21766 0.96535 0.97278 0.98960 1.19694 0.96725 0.94759 0.94159 1.20584 0.98627 0.92678 1.39988 1.25523 1.00542 0.95304 0.95775 1.69948 1.28318 1.08939 1.49492 0.85865 0.79866 0.78771 0.79162 1.19658 1.21850 1.18461 1.19299 0.94100 0.96746 0.92798 1.21716 0.99910 0.92757 0.99548 0.90921 0.88135 0.93155 0.86713 0.91096 0.93544 0.88114 0.76471 0.79479 0.74848 0.94084 0.92414 0.95038 0.96833 0.92726 0.94636 0.98341 0.92107 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.30 71.98 0.67 -2.06 16 2 C 0.12 2.73 3.53 44.99 0.16 2.89 16 3 C -0.15 -2.89 9.45 71.98 0.68 -2.21 16 4 N -0.26 -6.68 3.09 -314.30 -0.97 -7.65 16 5 N -0.29 -6.96 11.52 -57.14 -0.66 -7.62 16 6 C -0.01 -0.15 12.03 85.19 1.02 0.87 16 7 C -0.18 -3.58 10.50 22.66 0.24 -3.34 16 8 C -0.06 -1.68 6.96 40.79 0.28 -1.40 16 9 C 0.59 18.45 7.75 86.59 0.67 19.12 16 10 O -0.58 -21.75 14.04 -4.14 -0.06 -21.81 16 11 N -0.69 -20.29 5.06 -446.19 -2.26 -22.55 16 12 C 0.17 6.23 2.32 44.96 0.10 6.33 16 13 H 0.06 2.49 7.65 -2.39 -0.02 2.47 16 14 C -0.11 -4.24 5.49 30.61 0.17 -4.08 16 15 C -0.02 -0.70 5.59 30.06 0.17 -0.53 16 16 C -0.50 -25.74 5.51 -16.17 -0.09 -25.83 16 17 C 0.03 1.47 5.46 84.65 0.46 1.93 16 18 N -0.93 -53.11 12.73 21.45 0.27 -52.83 16 19 Si 0.94 42.81 27.27 68.60 1.87 44.68 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.26 -11.47 6.46 99.48 0.64 -10.83 16 23 C 0.01 0.41 5.97 30.11 0.18 0.59 16 24 C -0.10 -3.83 5.40 30.66 0.17 -3.66 16 25 H 0.07 1.29 8.09 -2.38 -0.02 1.27 16 26 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.12 3.20 5.38 -2.39 -0.01 3.19 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.22 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.19 2.51 7.59 -2.91 -0.02 2.48 16 34 H 0.41 9.37 7.64 -92.71 -0.71 8.66 16 35 H 0.04 1.61 8.06 -2.39 -0.02 1.59 16 36 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.03 1.43 4.78 -2.39 -0.01 1.41 16 38 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 40 H 0.03 1.88 7.07 -2.39 -0.02 1.87 16 41 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -65.25 343.69 3.32 -61.93 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.24 Total: 17.22 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 4.88 Total: -11.37 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -3.62 Total: -90.65 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.06 Total: -21.81 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.87 Total: 44.68 kcal Total: -65.25 3.32 -61.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189373309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.926 kcal (2) G-P(sol) polarization free energy of solvation -65.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds