Wall clock time and date at job start Tue Mar 31 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47042 * 2 1 4 4 N 1.28466 * 124.88210 * 90.02601 * 3 2 1 5 5 C 1.31813 * 110.07410 * 179.97438 * 4 3 2 6 6 C 1.47706 * 126.51788 * 179.97438 * 5 4 3 7 7 O 1.21571 * 119.99754 * 180.02562 * 6 5 4 8 8 N 1.34766 * 120.00418 * 0.02562 * 6 5 4 9 9 C 1.46499 * 120.00232 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.41567 * 325.00213 * 9 8 6 11 11 C 1.52957 * 109.41233 * 84.86180 * 9 8 6 12 12 C 1.53244 * 109.40112 * 183.77685 * 11 9 8 13 13 C 1.51276 * 108.48119 * 305.26321 * 12 11 9 14 14 C 1.37875 * 120.85372 * 231.36618 * 13 12 11 15 15 N 1.31519 * 119.99674 * 348.88064 * 14 13 12 16 16 Si 1.86799 * 120.00294 * 168.87873 * 14 13 12 17 17 H 1.48501 * 109.46763 * 354.66146 * 16 14 13 18 18 H 1.48501 * 109.46883 * 114.66058 * 16 14 13 19 19 H 1.48491 * 109.47059 * 234.66067 * 16 14 13 20 20 C 1.51273 * 118.29828 * 51.38643 * 13 12 11 21 21 C 1.52961 * 109.41584 * 205.14091 * 9 8 6 22 22 C 1.41503 * 106.95824 * 0.02562 * 5 4 3 23 23 C 1.35030 * 124.88575 * 269.72061 * 3 2 1 24 24 C 1.50706 * 126.38531 * 0.02562 * 23 3 2 25 25 H 1.08999 * 109.47214 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46812 * 300.00081 * 1 2 3 27 27 H 1.09001 * 109.46971 * 59.99699 * 1 2 3 28 28 H 1.09001 * 109.46971 * 120.00301 * 2 1 3 29 29 H 1.09002 * 109.46812 * 239.99919 * 2 1 3 30 30 H 0.97004 * 120.00211 * 359.97438 * 8 6 5 31 31 H 1.09003 * 109.48497 * 303.68451 * 11 9 8 32 32 H 1.09002 * 109.48929 * 63.72595 * 11 9 8 33 33 H 1.08997 * 109.62090 * 185.58952 * 12 11 9 34 34 H 1.08995 * 109.84335 * 65.07011 * 12 11 9 35 35 H 0.96994 * 119.99640 * 179.97438 * 15 14 13 36 36 H 1.09003 * 109.62577 * 188.93890 * 20 13 12 37 37 H 1.09000 * 109.78486 * 68.46338 * 20 13 12 38 38 H 1.09005 * 109.48443 * 296.27725 * 21 9 8 39 39 H 1.09004 * 109.48262 * 56.30113 * 21 9 8 40 40 H 1.07998 * 127.24513 * 180.02562 * 22 5 4 41 41 H 1.08999 * 109.46777 * 90.00208 * 24 23 3 42 42 H 1.08997 * 109.47311 * 210.00186 * 24 23 3 43 43 H 1.08998 * 109.46657 * 330.00276 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2637 2.0738 1.0538 5 6 2.6888 3.2751 0.7170 6 6 3.0733 4.3623 1.6400 7 8 3.4507 5.4300 1.1978 8 7 3.0057 4.1707 2.9722 9 6 3.3876 5.2488 3.8876 10 1 4.2133 5.8148 3.4565 11 6 2.1925 6.1786 4.1047 12 6 2.6183 7.3575 4.9863 13 6 3.2200 6.8098 6.2617 14 6 2.7841 7.2479 7.4942 15 7 1.9988 8.2995 7.5782 16 14 3.3090 6.3479 9.0446 17 1 4.0786 5.1328 8.6750 18 1 4.1604 7.2409 9.8711 19 1 2.1053 5.9546 9.8201 20 6 4.3124 5.7694 6.1501 21 6 3.8257 4.6492 5.2249 22 6 2.7057 3.3254 -0.6971 23 6 2.2809 2.1076 -1.1076 24 6 2.1256 1.6492 -2.5349 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.7042 3.3189 3.3251 31 1 1.8437 6.5531 3.1423 32 1 1.3884 5.6290 4.5942 33 1 1.7481 7.9689 5.2252 34 1 3.3584 7.9626 4.4628 35 1 1.6919 8.6075 8.4452 36 1 4.5307 5.3605 7.1367 37 1 5.2124 6.2225 5.7344 38 1 2.9821 4.1365 5.6873 39 1 4.6351 3.9387 5.0569 40 1 3.0006 4.1584 -1.3180 41 1 1.1194 1.8816 -2.8837 42 1 2.8550 2.1613 -3.1624 43 1 2.2901 0.5731 -2.5907 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190123841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:13 Heat of formation + Delta-G solvation = 20.992732 kcal Electronic energy + Delta-G solvation = -23162.478797 eV Core-core repulsion = 19822.525900 eV Total energy + Delta-G solvation = -3339.952896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.75567 -39.15088 -36.62747 -34.84239 -33.63021 -32.83511 -31.51629 -30.14001 -29.54120 -27.53302 -26.98110 -24.76864 -22.88293 -21.68317 -21.45347 -20.73659 -19.56693 -19.06785 -17.26985 -16.66383 -16.15532 -15.84183 -15.41055 -14.98515 -14.41017 -14.28244 -13.88332 -13.66459 -13.47803 -13.34363 -13.05604 -12.88164 -12.74621 -12.60569 -12.25054 -12.17571 -12.02203 -11.74883 -11.54318 -10.98554 -10.85595 -10.79773 -10.68373 -10.19509 -9.87266 -9.68369 -9.32654 -9.16556 -8.98790 -8.98034 -8.75371 -8.35887 -8.16175 -6.05716 -3.94403 1.65247 2.09734 2.29105 3.29161 3.38330 3.39189 3.63701 3.75220 4.12518 4.40536 4.42391 4.49121 4.64146 4.71631 4.84680 5.08364 5.17169 5.20565 5.25267 5.44798 5.49145 5.61162 5.63689 5.79062 5.86028 5.96922 6.26151 6.39317 6.55990 6.61510 6.68187 6.80816 6.86092 6.90713 7.13445 7.17885 7.33797 7.48036 7.70466 7.79693 7.85273 7.92227 8.12000 8.45865 8.67386 9.02757 9.59785 11.03910 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028188 B = 0.003288 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.079596 B = 8514.174734 C = 8948.657581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.115 3.885 3 N -0.282 5.282 4 N -0.263 5.263 5 C -0.006 4.006 6 C 0.597 3.403 7 O -0.536 6.536 8 N -0.710 5.710 9 C 0.154 3.846 10 H 0.080 0.920 11 C -0.115 4.115 12 C 0.014 3.986 13 C -0.488 4.488 14 C 0.076 3.924 15 N -0.886 5.886 16 Si 0.878 3.122 17 H -0.256 1.256 18 H -0.284 1.284 19 H -0.287 1.287 20 C -0.021 4.021 21 C -0.113 4.113 22 C -0.180 4.180 23 C 0.004 3.996 24 C -0.081 4.081 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.399 0.601 31 H 0.035 0.965 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.007 0.993 35 H 0.263 0.737 36 H 0.043 0.957 37 H 0.020 0.980 38 H 0.055 0.945 39 H 0.037 0.963 40 H 0.160 0.840 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.959 -19.035 -17.219 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.006 4.006 3 N -0.071 5.071 4 N -0.098 5.098 5 C -0.167 4.167 6 C 0.380 3.620 7 O -0.411 6.411 8 N -0.359 5.359 9 C 0.051 3.949 10 H 0.098 0.902 11 C -0.154 4.154 12 C -0.024 4.024 13 C -0.507 4.507 14 C -0.127 4.127 15 N -0.523 5.523 16 Si 0.706 3.294 17 H -0.181 1.181 18 H -0.210 1.210 19 H -0.213 1.213 20 C -0.059 4.059 21 C -0.152 4.152 22 C -0.208 4.208 23 C -0.120 4.120 24 C -0.139 4.139 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.233 0.767 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.026 0.974 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.178 0.822 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.063 -18.919 -16.456 25.159 hybrid contribution 0.078 -0.460 0.390 0.608 sum -1.985 -19.379 -16.066 25.251 Atomic orbital electron populations 1.22169 0.93509 1.03463 1.03714 1.21944 0.95968 0.77508 1.05149 1.45503 1.46587 1.12341 1.02694 1.73526 1.17609 1.04986 1.13682 1.22127 1.07386 0.92908 0.94271 1.16906 0.77947 0.85273 0.81852 1.90784 1.47625 1.25569 1.77149 1.46273 1.66370 1.17992 1.05295 1.21101 0.98336 0.87044 0.88402 0.90226 1.21985 0.96264 0.98525 0.98585 1.19327 0.97718 0.92621 0.92761 1.20058 1.18529 1.20656 0.91441 1.24855 0.94932 0.94516 0.98374 1.69914 1.34933 1.22734 1.24762 0.86759 0.78390 0.80993 0.83238 1.18086 1.20973 1.21301 1.19912 0.96714 0.93558 0.95724 1.21872 0.99310 0.98936 0.95042 1.21531 1.07798 0.97750 0.93730 1.21352 1.06503 0.93031 0.91106 1.20320 1.03437 1.01432 0.88733 0.90099 0.91182 0.91767 0.88001 0.88335 0.76746 0.94580 0.93301 0.92743 0.97427 0.92727 0.93846 0.96195 0.92633 0.94443 0.82209 0.90501 0.89652 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.24 37.16 0.38 -0.57 16 2 C 0.11 0.72 6.80 -4.04 -0.03 0.70 16 3 N -0.28 -3.07 3.30 -57.11 -0.19 -3.25 16 4 N -0.26 -3.74 11.67 33.42 0.39 -3.35 16 5 C -0.01 -0.10 7.13 -82.76 -0.59 -0.69 16 6 C 0.60 11.38 7.79 -12.40 -0.10 11.28 16 7 O -0.54 -11.90 16.59 5.30 0.09 -11.81 16 8 N -0.71 -13.04 5.07 -54.84 -0.28 -13.32 16 9 C 0.15 3.23 2.35 -67.97 -0.16 3.07 16 10 H 0.08 1.82 7.57 -51.93 -0.39 1.43 16 11 C -0.11 -2.65 5.50 -26.63 -0.15 -2.80 16 12 C 0.01 0.36 5.93 -27.47 -0.16 0.20 16 13 C -0.49 -13.11 5.48 -98.92 -0.54 -13.66 16 14 C 0.08 2.10 5.44 -17.82 -0.10 2.01 16 15 N -0.89 -25.99 12.82 55.43 0.71 -25.28 16 16 Si 0.88 20.87 27.95 -169.99 -4.75 16.12 16 17 H -0.26 -5.75 5.58 56.52 0.32 -5.44 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 C -0.02 -0.50 5.65 -27.49 -0.16 -0.65 16 21 C -0.11 -2.32 5.40 -26.63 -0.14 -2.47 16 22 C -0.18 -2.47 10.73 -39.36 -0.42 -2.89 16 23 C 0.00 0.04 6.92 -82.21 -0.57 -0.53 16 24 C -0.08 -0.48 10.10 36.01 0.36 -0.11 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.10 0.35 6.94 -51.93 -0.36 -0.01 16 30 H 0.40 6.50 8.33 -40.82 -0.34 6.16 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.05 1.55 7.19 -51.93 -0.37 1.18 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.04 1.00 4.36 -51.93 -0.23 0.78 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.16 2.05 8.06 -52.49 -0.42 1.62 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.27 6.99 -51.93 -0.36 -0.09 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -33.15 348.11 -7.92 -41.07 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.77 Total: 1.71 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.37 Total: -7.11 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.63 Total: -45.21 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.75 Total: 16.12 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.15 -7.92 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190123841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.066 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds