Wall clock time and date at job start Tue Mar 31 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47042 * 2 1 4 4 N 1.28466 * 124.88210 * 90.02601 * 3 2 1 5 5 C 1.31813 * 110.07410 * 179.97438 * 4 3 2 6 6 C 1.47706 * 126.51788 * 179.97438 * 5 4 3 7 7 O 1.21571 * 119.99754 * 180.02562 * 6 5 4 8 8 N 1.34766 * 120.00418 * 0.02562 * 6 5 4 9 9 C 1.46499 * 120.00232 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.41567 * 325.00213 * 9 8 6 11 11 C 1.52957 * 109.41233 * 84.86180 * 9 8 6 12 12 C 1.53244 * 109.40112 * 183.77685 * 11 9 8 13 13 C 1.51276 * 108.48119 * 305.26321 * 12 11 9 14 14 C 1.37875 * 120.85372 * 231.36618 * 13 12 11 15 15 N 1.31519 * 119.99674 * 348.88064 * 14 13 12 16 16 Si 1.86799 * 120.00294 * 168.87873 * 14 13 12 17 17 H 1.48501 * 109.46763 * 354.66146 * 16 14 13 18 18 H 1.48501 * 109.46883 * 114.66058 * 16 14 13 19 19 H 1.48491 * 109.47059 * 234.66067 * 16 14 13 20 20 C 1.51273 * 118.29828 * 51.38643 * 13 12 11 21 21 C 1.52961 * 109.41584 * 205.14091 * 9 8 6 22 22 C 1.41503 * 106.95824 * 0.02562 * 5 4 3 23 23 C 1.35030 * 124.88575 * 269.72061 * 3 2 1 24 24 C 1.50706 * 126.38531 * 0.02562 * 23 3 2 25 25 H 1.08999 * 109.47214 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46812 * 300.00081 * 1 2 3 27 27 H 1.09001 * 109.46971 * 59.99699 * 1 2 3 28 28 H 1.09001 * 109.46971 * 120.00301 * 2 1 3 29 29 H 1.09002 * 109.46812 * 239.99919 * 2 1 3 30 30 H 0.97004 * 120.00211 * 359.97438 * 8 6 5 31 31 H 1.09003 * 109.48497 * 303.68451 * 11 9 8 32 32 H 1.09002 * 109.48929 * 63.72595 * 11 9 8 33 33 H 1.08997 * 109.62090 * 185.58952 * 12 11 9 34 34 H 1.08995 * 109.84335 * 65.07011 * 12 11 9 35 35 H 0.96994 * 119.99640 * 179.97438 * 15 14 13 36 36 H 1.09003 * 109.62577 * 188.93890 * 20 13 12 37 37 H 1.09000 * 109.78486 * 68.46338 * 20 13 12 38 38 H 1.09005 * 109.48443 * 296.27725 * 21 9 8 39 39 H 1.09004 * 109.48262 * 56.30113 * 21 9 8 40 40 H 1.07998 * 127.24513 * 180.02562 * 22 5 4 41 41 H 1.08999 * 109.46777 * 90.00208 * 24 23 3 42 42 H 1.08997 * 109.47311 * 210.00186 * 24 23 3 43 43 H 1.08998 * 109.46657 * 330.00276 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2637 2.0738 1.0538 5 6 2.6888 3.2751 0.7170 6 6 3.0733 4.3623 1.6400 7 8 3.4507 5.4300 1.1978 8 7 3.0057 4.1707 2.9722 9 6 3.3876 5.2488 3.8876 10 1 4.2133 5.8148 3.4565 11 6 2.1925 6.1786 4.1047 12 6 2.6183 7.3575 4.9863 13 6 3.2200 6.8098 6.2617 14 6 2.7841 7.2479 7.4942 15 7 1.9988 8.2995 7.5782 16 14 3.3090 6.3479 9.0446 17 1 4.0786 5.1328 8.6750 18 1 4.1604 7.2409 9.8711 19 1 2.1053 5.9546 9.8201 20 6 4.3124 5.7694 6.1501 21 6 3.8257 4.6492 5.2249 22 6 2.7057 3.3254 -0.6971 23 6 2.2809 2.1076 -1.1076 24 6 2.1256 1.6492 -2.5349 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.7042 3.3189 3.3251 31 1 1.8437 6.5531 3.1423 32 1 1.3884 5.6290 4.5942 33 1 1.7481 7.9689 5.2252 34 1 3.3584 7.9626 4.4628 35 1 1.6919 8.6075 8.4452 36 1 4.5307 5.3605 7.1367 37 1 5.2124 6.2225 5.7344 38 1 2.9821 4.1365 5.6873 39 1 4.6351 3.9387 5.0569 40 1 3.0006 4.1584 -1.3180 41 1 1.1194 1.8816 -2.8837 42 1 2.8550 2.1613 -3.1624 43 1 2.2901 0.5731 -2.5907 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190123841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:13 Heat of formation + Delta-G solvation = -1.119211 kcal Electronic energy + Delta-G solvation = -23163.437642 eV Core-core repulsion = 19822.525900 eV Total energy + Delta-G solvation = -3340.911742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.70094 -40.72588 -38.42073 -35.60032 -35.37671 -33.73145 -33.28746 -31.51460 -30.99693 -29.16733 -27.84897 -25.82604 -24.06158 -23.53277 -23.02811 -21.82813 -21.32452 -20.39511 -18.38577 -17.96349 -17.53814 -17.13921 -16.86204 -16.38365 -15.75579 -15.64778 -15.29437 -14.92525 -14.60658 -14.46221 -14.17144 -14.02586 -14.00152 -13.89382 -13.44461 -13.36276 -13.23133 -12.83458 -12.79883 -12.74063 -12.57054 -12.18742 -11.96487 -11.86767 -11.80386 -11.34753 -11.20976 -10.88493 -10.68137 -10.47584 -10.19224 -9.89367 -9.85200 -8.16498 -6.10793 0.52254 1.11906 1.42047 1.45028 1.52862 1.54879 2.21923 2.37903 2.43751 3.10679 3.32681 3.74109 3.86251 4.01569 4.03301 4.10006 4.20000 4.33699 4.46861 4.49642 4.63720 4.69258 4.75508 4.79909 4.83946 4.85024 4.98201 5.03093 5.04195 5.08795 5.11665 5.19849 5.22666 5.27993 5.35515 5.53862 5.56779 5.65117 5.77188 5.79463 5.92549 6.34117 6.51615 6.93289 6.93889 7.21183 7.46798 8.95230 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028188 B = 0.003288 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.079596 B = 8514.174734 C = 8948.657581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.272 5.272 4 N -0.273 5.273 5 C -0.041 4.041 6 C 0.595 3.405 7 O -0.578 6.578 8 N -0.701 5.701 9 C 0.165 3.835 10 H 0.059 0.941 11 C -0.102 4.102 12 C 0.013 3.987 13 C -0.502 4.502 14 C 0.018 3.982 15 N -0.933 5.933 16 Si 0.942 3.058 17 H -0.228 1.228 18 H -0.285 1.285 19 H -0.287 1.287 20 C -0.023 4.023 21 C -0.105 4.105 22 C -0.210 4.210 23 C 0.025 3.975 24 C -0.080 4.080 25 H 0.109 0.891 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.137 0.863 30 H 0.411 0.589 31 H 0.026 0.974 32 H 0.049 0.951 33 H 0.022 0.978 34 H -0.010 1.010 35 H 0.263 0.737 36 H 0.054 0.946 37 H 0.018 0.982 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.158 0.842 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.680 -23.380 -18.330 29.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.016 4.016 3 N -0.062 5.062 4 N -0.110 5.110 5 C -0.199 4.199 6 C 0.381 3.619 7 O -0.456 6.456 8 N -0.351 5.351 9 C 0.061 3.939 10 H 0.077 0.923 11 C -0.141 4.141 12 C -0.025 4.025 13 C -0.521 4.521 14 C -0.180 4.180 15 N -0.572 5.572 16 Si 0.767 3.233 17 H -0.152 1.152 18 H -0.211 1.211 19 H -0.214 1.214 20 C -0.061 4.061 21 C -0.143 4.143 22 C -0.238 4.238 23 C -0.100 4.100 24 C -0.138 4.138 25 H 0.127 0.873 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.126 0.874 29 H 0.155 0.845 30 H 0.248 0.752 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.008 0.992 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.175 0.825 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.783 -23.318 -17.572 29.252 hybrid contribution -0.076 0.859 0.591 1.046 sum -1.859 -22.458 -16.981 28.217 Atomic orbital electron populations 1.22155 0.92815 1.04945 1.02485 1.22473 0.96498 0.75187 1.07412 1.46046 1.44668 1.13455 1.02055 1.73439 1.17825 1.04489 1.15261 1.21724 1.10331 0.93191 0.94639 1.17340 0.76871 0.85572 0.82123 1.90748 1.49494 1.27530 1.77834 1.46017 1.66335 1.17723 1.04975 1.20743 0.96361 0.87360 0.89427 0.92309 1.21785 0.97290 0.97806 0.97217 1.19259 0.96026 0.93372 0.93888 1.20606 1.19114 1.21161 0.91249 1.25757 0.95198 0.95134 1.01890 1.70067 1.36940 1.24679 1.25514 0.85750 0.78123 0.80579 0.78809 1.15191 1.21098 1.21383 1.19913 0.95419 0.93613 0.97108 1.21749 1.00633 0.98323 0.93572 1.21713 1.09710 0.99528 0.92862 1.21950 1.03504 0.91595 0.92974 1.20541 1.04642 1.03323 0.85319 0.87263 0.93795 0.91583 0.87410 0.84513 0.75247 0.95523 0.93235 0.95962 0.99183 0.92806 0.92735 0.96312 0.91745 0.91273 0.82476 0.88965 0.88784 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.24 71.98 0.74 -0.56 16 2 C 0.10 0.90 6.80 86.38 0.59 1.48 16 3 N -0.27 -5.22 3.30 -334.58 -1.10 -6.32 16 4 N -0.27 -7.45 11.67 -48.18 -0.56 -8.02 16 5 C -0.04 -1.31 7.13 42.46 0.30 -1.01 16 6 C 0.60 23.24 7.79 86.75 0.68 23.92 16 7 O -0.58 -26.80 16.59 -3.94 -0.07 -26.87 16 8 N -0.70 -25.69 5.07 -445.68 -2.26 -27.95 16 9 C 0.16 6.96 2.35 44.96 0.11 7.07 16 10 H 0.06 2.75 7.57 -2.39 -0.02 2.73 16 11 C -0.10 -4.87 5.50 30.66 0.17 -4.71 16 12 C 0.01 0.70 5.93 30.11 0.18 0.88 16 13 C -0.50 -27.37 5.48 -16.17 -0.09 -27.46 16 14 C 0.02 1.03 5.44 84.65 0.46 1.49 16 15 N -0.93 -56.59 12.82 21.45 0.28 -56.31 16 16 Si 0.94 42.58 27.95 68.60 1.92 44.50 16 17 H -0.23 -9.22 5.58 99.48 0.56 -8.66 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 20 C -0.02 -1.04 5.65 30.11 0.17 -0.87 16 21 C -0.10 -4.09 5.40 30.66 0.17 -3.93 16 22 C -0.21 -5.68 10.73 22.41 0.24 -5.44 16 23 C 0.02 0.46 6.92 41.40 0.29 0.75 16 24 C -0.08 -0.62 10.10 71.24 0.72 0.10 16 25 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.14 0.21 6.94 -2.39 -0.02 0.19 16 30 H 0.41 13.00 8.33 -92.71 -0.77 12.22 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.02 1.33 7.19 -2.39 -0.02 1.31 16 34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.05 2.36 4.36 -2.39 -0.01 2.35 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.16 4.14 8.06 -2.91 -0.02 4.11 16 41 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.10 0.22 6.99 -2.39 -0.02 0.20 16 Total: -1.00 -76.17 348.11 3.00 -73.16 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.09 Total: 16.09 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 4.71 Total: -8.28 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -3.65 Total: -98.60 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.07 Total: -26.87 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.92 Total: 44.50 kcal Total: -76.17 3.00 -73.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190123841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.043 kcal (2) G-P(sol) polarization free energy of solvation -76.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds