Wall clock time and date at job start Tue Mar 31 2020 06:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 N 1.46508 * 109.46900 * 119.99294 * 2 1 3 5 5 C 1.35397 * 126.43805 * 300.03217 * 4 2 1 6 6 C 1.35574 * 107.15745 * 179.97438 * 5 4 2 7 7 N 1.33103 * 108.34611 * 359.74182 * 6 5 4 8 8 C 1.31615 * 109.09828 * 0.42457 * 7 6 5 9 9 C 1.47406 * 125.86412 * 179.83366 * 8 7 6 10 10 O 1.21600 * 119.99911 * 179.70020 * 9 8 7 11 11 N 1.34777 * 119.99796 * 359.69272 * 9 8 7 12 12 C 1.46504 * 119.99760 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.35345 * 35.18305 * 12 11 9 14 14 C 1.52955 * 109.41106 * 155.00766 * 12 11 9 15 15 C 1.53236 * 109.40158 * 183.70548 * 14 12 11 16 16 C 1.51267 * 108.53381 * 305.36921 * 15 14 12 17 17 C 1.37882 * 120.84699 * 231.32347 * 16 15 14 18 18 N 1.31516 * 120.00075 * 0.02562 * 17 16 15 19 19 Si 1.86790 * 119.99834 * 180.02562 * 17 16 15 20 20 H 1.48505 * 109.47322 * 90.00265 * 19 17 16 21 21 H 1.48501 * 109.47600 * 210.00198 * 19 17 16 22 22 H 1.48502 * 109.47555 * 330.00163 * 19 17 16 23 23 C 1.51263 * 118.30394 * 51.35053 * 16 15 14 24 24 C 1.52965 * 109.41231 * 275.35883 * 12 11 9 25 25 H 1.08992 * 109.47805 * 300.00687 * 1 2 3 26 26 H 1.09000 * 109.46846 * 60.00819 * 1 2 3 27 27 H 1.09008 * 109.46846 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47384 * 239.99647 * 2 1 3 29 29 H 1.08998 * 109.47188 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47312 * 299.99622 * 3 2 1 31 31 H 1.09003 * 109.47290 * 59.99579 * 3 2 1 32 32 H 1.07996 * 126.42448 * 359.93769 * 5 4 2 33 33 H 1.07994 * 125.82171 * 180.02562 * 6 5 4 34 34 H 0.97002 * 120.00236 * 0.02562 * 11 9 8 35 35 H 1.08988 * 109.48772 * 63.72599 * 14 12 11 36 36 H 1.09004 * 109.47866 * 303.67773 * 14 12 11 37 37 H 1.09000 * 109.62824 * 65.08814 * 15 14 12 38 38 H 1.09004 * 109.62129 * 185.46159 * 15 14 12 39 39 H 0.97000 * 120.00069 * 179.97438 * 18 17 16 40 40 H 1.09005 * 109.62818 * 68.36240 * 23 16 15 41 41 H 1.08994 * 109.63088 * 188.93762 * 23 16 15 42 42 H 1.08995 * 109.48255 * 56.31883 * 24 12 11 43 43 H 1.08998 * 109.49045 * 296.27865 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.7723 -0.3436 2.4818 6 6 2.4096 -1.2454 3.2683 7 7 3.0254 -2.1256 2.4824 8 6 2.8071 -1.8062 1.2244 9 6 3.3202 -2.5310 0.0478 10 8 3.0468 -2.1434 -1.0719 11 7 4.0925 -3.6231 0.2131 12 6 4.6020 -4.3437 -0.9562 13 1 4.8240 -3.6316 -1.7510 14 6 5.8790 -5.0940 -0.5744 15 6 6.4624 -5.7720 -1.8186 16 6 5.3912 -6.6408 -2.4396 17 6 5.6407 -7.9625 -2.7430 18 7 6.8221 -8.4831 -2.4922 19 14 4.3007 -9.0137 -3.5101 20 1 4.3818 -8.9170 -4.9898 21 1 4.4828 -10.4281 -3.0958 22 1 2.9719 -8.5318 -3.0548 23 6 4.0394 -6.0225 -2.7199 24 6 3.5439 -5.3353 -1.4431 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.1801 0.4947 2.8177 33 1 2.4128 -1.2514 4.3483 34 1 4.3104 -3.9324 1.1063 35 1 5.6463 -5.8495 0.1759 36 1 6.6064 -4.3905 -0.1690 37 1 6.7792 -5.0134 -2.5344 38 1 7.3168 -6.3863 -1.5340 39 1 6.9975 -9.4130 -2.7053 40 1 4.1318 -5.2871 -3.5191 41 1 3.3349 -6.8003 -3.0140 42 1 2.6163 -4.8031 -1.6533 43 1 3.3662 -6.0852 -0.6722 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199414958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:02 Heat of formation + Delta-G solvation = 4.870332 kcal Electronic energy + Delta-G solvation = -23620.205877 eV Core-core repulsion = 20279.553861 eV Total energy + Delta-G solvation = -3340.652016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.38266 -39.25919 -36.79290 -36.23401 -33.71600 -31.69779 -31.00015 -29.89145 -29.60854 -27.66315 -27.21265 -23.94839 -22.81275 -21.88221 -21.47946 -20.64900 -19.83595 -19.29762 -17.69147 -16.34221 -15.88211 -15.84778 -15.57330 -14.87820 -14.46686 -14.23341 -14.12096 -14.07468 -13.64683 -13.30792 -13.11517 -12.73704 -12.64822 -12.54941 -12.30775 -12.08621 -11.77066 -11.68488 -11.45197 -10.99753 -10.82553 -10.70084 -10.29424 -10.16015 -9.99543 -9.89488 -9.79075 -9.52562 -9.01584 -8.88987 -8.63605 -8.47398 -8.27813 -6.09008 -3.99863 1.40554 2.39668 2.61915 3.29247 3.37542 3.38715 3.49638 3.55990 4.32809 4.39967 4.41666 4.59796 4.71366 4.88680 5.12911 5.13943 5.18364 5.23279 5.32240 5.39236 5.54980 5.67636 5.72087 5.77865 5.88674 6.18895 6.20016 6.46810 6.50399 6.53001 6.73422 6.75122 6.86601 6.90263 6.97963 7.11226 7.22291 7.44334 7.63097 7.66514 7.72652 7.82397 7.98366 8.39122 8.42167 8.97305 9.55751 11.00481 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027134 B = 0.003643 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.659184 B = 7684.524936 C = 8038.149217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 C -0.158 4.158 4 N -0.407 5.407 5 C -0.035 4.035 6 C -0.031 4.031 7 N -0.448 5.448 8 C 0.147 3.853 9 C 0.601 3.399 10 O -0.547 6.547 11 N -0.694 5.694 12 C 0.155 3.845 13 H 0.081 0.919 14 C -0.115 4.115 15 C 0.014 3.986 16 C -0.488 4.488 17 C 0.076 3.924 18 N -0.890 5.890 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.264 1.264 23 C -0.018 4.018 24 C -0.113 4.113 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.138 0.862 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.177 0.823 33 H 0.175 0.825 34 H 0.407 0.593 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.006 0.994 38 H 0.061 0.939 39 H 0.264 0.736 40 H 0.019 0.981 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.870 17.333 8.802 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.000 4.000 3 C -0.216 4.216 4 N -0.088 5.088 5 C -0.173 4.173 6 C -0.184 4.184 7 N -0.169 5.169 8 C -0.113 4.113 9 C 0.384 3.616 10 O -0.425 6.425 11 N -0.342 5.342 12 C 0.052 3.948 13 H 0.099 0.901 14 C -0.153 4.153 15 C -0.024 4.024 16 C -0.507 4.507 17 C -0.126 4.126 18 N -0.528 5.528 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.189 1.189 23 C -0.056 4.056 24 C -0.152 4.152 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.155 0.845 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.194 0.806 33 H 0.192 0.808 34 H 0.242 0.758 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.025 0.975 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.497 16.796 8.024 21.370 hybrid contribution -1.189 0.011 0.078 1.191 sum -11.686 16.807 8.102 22.015 Atomic orbital electron populations 1.22136 0.93150 1.03283 1.03040 1.22103 0.95617 0.94450 0.87780 1.22136 1.02323 0.94078 1.03048 1.45410 1.35320 1.20942 1.07126 1.22752 1.06954 1.04141 0.83448 1.22384 1.01700 0.94407 0.99916 1.70218 1.21340 1.26111 0.99268 1.22900 1.02248 0.92031 0.94140 1.16518 0.79076 0.80656 0.85312 1.90705 1.59657 1.67899 1.24205 1.46169 1.49354 1.26751 1.11964 1.21191 0.94725 0.93062 0.85789 0.90131 1.21948 0.94005 0.97770 1.01594 1.19338 0.97170 0.94840 0.91053 1.20049 0.95749 0.94995 1.39915 1.24839 0.95502 0.97187 0.95091 1.69834 1.21445 1.14186 1.47337 0.86681 0.82843 0.79194 0.79766 1.20408 1.21667 1.18946 1.19790 0.96488 0.96413 0.92930 1.21907 0.95948 0.97048 1.00281 0.92057 0.90235 0.91667 0.84461 0.91686 0.90236 0.92061 0.80591 0.80789 0.75812 0.92449 0.94394 0.97541 0.92021 0.92593 0.96244 0.94578 0.94514 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.24 37.16 0.34 -0.96 16 2 C 0.10 1.08 3.50 -67.93 -0.24 0.84 16 3 C -0.16 -1.27 9.25 37.16 0.34 -0.93 16 4 N -0.41 -5.04 2.62 -107.51 -0.28 -5.32 16 5 C -0.03 -0.35 10.53 -16.93 -0.18 -0.53 16 6 C -0.03 -0.35 11.85 -17.95 -0.21 -0.57 16 7 N -0.45 -6.67 10.89 -11.26 -0.12 -6.79 16 8 C 0.15 2.26 7.79 -154.52 -1.20 1.06 16 9 C 0.60 10.57 7.77 -12.53 -0.10 10.47 16 10 O -0.55 -10.55 14.02 5.28 0.07 -10.47 16 11 N -0.69 -12.17 5.07 -54.93 -0.28 -12.45 16 12 C 0.15 3.09 2.35 -67.97 -0.16 2.93 16 13 H 0.08 1.73 7.57 -51.93 -0.39 1.33 16 14 C -0.11 -2.38 5.40 -26.63 -0.14 -2.53 16 15 C 0.01 0.34 5.96 -27.48 -0.16 0.18 16 16 C -0.49 -12.81 5.51 -98.93 -0.55 -13.35 16 17 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 18 N -0.89 -25.46 12.74 55.43 0.71 -24.76 16 19 Si 0.89 21.12 27.53 -169.99 -4.68 16.44 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.26 -6.12 6.10 56.52 0.35 -5.77 16 23 C -0.02 -0.43 5.59 -27.49 -0.15 -0.59 16 24 C -0.11 -2.41 5.50 -26.63 -0.15 -2.56 16 25 H 0.06 0.41 7.95 -51.93 -0.41 0.00 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.14 1.82 5.35 -51.93 -0.28 1.55 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.40 7.95 -51.93 -0.41 -0.01 16 32 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.41 6.58 8.28 -40.82 -0.34 6.24 16 35 H 0.06 1.20 8.14 -51.94 -0.42 0.78 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.06 1.65 7.08 -51.93 -0.37 1.28 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.04 0.85 4.59 -51.93 -0.24 0.61 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -30.37 343.53 -8.76 -39.14 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.71 Total: 3.58 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.65 Total: -4.55 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.02 Total: -49.32 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.47 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.68 Total: 16.44 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.37 -8.76 -39.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199414958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.007 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds