Wall clock time and date at job start Tue Mar 31 2020 06:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 N 1.46508 * 109.46900 * 119.99294 * 2 1 3 5 5 C 1.35397 * 126.43805 * 300.03217 * 4 2 1 6 6 C 1.35574 * 107.15745 * 179.97438 * 5 4 2 7 7 N 1.33103 * 108.34611 * 359.74182 * 6 5 4 8 8 C 1.31615 * 109.09828 * 0.42457 * 7 6 5 9 9 C 1.47406 * 125.86412 * 179.83366 * 8 7 6 10 10 O 1.21600 * 119.99911 * 179.70020 * 9 8 7 11 11 N 1.34777 * 119.99796 * 359.69272 * 9 8 7 12 12 C 1.46504 * 119.99760 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.35345 * 35.18305 * 12 11 9 14 14 C 1.52955 * 109.41106 * 155.00766 * 12 11 9 15 15 C 1.53236 * 109.40158 * 183.70548 * 14 12 11 16 16 C 1.51267 * 108.53381 * 305.36921 * 15 14 12 17 17 C 1.37882 * 120.84699 * 231.32347 * 16 15 14 18 18 N 1.31516 * 120.00075 * 0.02562 * 17 16 15 19 19 Si 1.86790 * 119.99834 * 180.02562 * 17 16 15 20 20 H 1.48505 * 109.47322 * 90.00265 * 19 17 16 21 21 H 1.48501 * 109.47600 * 210.00198 * 19 17 16 22 22 H 1.48502 * 109.47555 * 330.00163 * 19 17 16 23 23 C 1.51263 * 118.30394 * 51.35053 * 16 15 14 24 24 C 1.52965 * 109.41231 * 275.35883 * 12 11 9 25 25 H 1.08992 * 109.47805 * 300.00687 * 1 2 3 26 26 H 1.09000 * 109.46846 * 60.00819 * 1 2 3 27 27 H 1.09008 * 109.46846 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47384 * 239.99647 * 2 1 3 29 29 H 1.08998 * 109.47188 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47312 * 299.99622 * 3 2 1 31 31 H 1.09003 * 109.47290 * 59.99579 * 3 2 1 32 32 H 1.07996 * 126.42448 * 359.93769 * 5 4 2 33 33 H 1.07994 * 125.82171 * 180.02562 * 6 5 4 34 34 H 0.97002 * 120.00236 * 0.02562 * 11 9 8 35 35 H 1.08988 * 109.48772 * 63.72599 * 14 12 11 36 36 H 1.09004 * 109.47866 * 303.67773 * 14 12 11 37 37 H 1.09000 * 109.62824 * 65.08814 * 15 14 12 38 38 H 1.09004 * 109.62129 * 185.46159 * 15 14 12 39 39 H 0.97000 * 120.00069 * 179.97438 * 18 17 16 40 40 H 1.09005 * 109.62818 * 68.36240 * 23 16 15 41 41 H 1.08994 * 109.63088 * 188.93762 * 23 16 15 42 42 H 1.08995 * 109.48255 * 56.31883 * 24 12 11 43 43 H 1.08998 * 109.49045 * 296.27865 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.7723 -0.3436 2.4818 6 6 2.4096 -1.2454 3.2683 7 7 3.0254 -2.1256 2.4824 8 6 2.8071 -1.8062 1.2244 9 6 3.3202 -2.5310 0.0478 10 8 3.0468 -2.1434 -1.0719 11 7 4.0925 -3.6231 0.2131 12 6 4.6020 -4.3437 -0.9562 13 1 4.8240 -3.6316 -1.7510 14 6 5.8790 -5.0940 -0.5744 15 6 6.4624 -5.7720 -1.8186 16 6 5.3912 -6.6408 -2.4396 17 6 5.6407 -7.9625 -2.7430 18 7 6.8221 -8.4831 -2.4922 19 14 4.3007 -9.0137 -3.5101 20 1 4.3818 -8.9170 -4.9898 21 1 4.4828 -10.4281 -3.0958 22 1 2.9719 -8.5318 -3.0548 23 6 4.0394 -6.0225 -2.7199 24 6 3.5439 -5.3353 -1.4431 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.1801 0.4947 2.8177 33 1 2.4128 -1.2514 4.3483 34 1 4.3104 -3.9324 1.1063 35 1 5.6463 -5.8495 0.1759 36 1 6.6064 -4.3905 -0.1690 37 1 6.7792 -5.0134 -2.5344 38 1 7.3168 -6.3863 -1.5340 39 1 6.9975 -9.4130 -2.7053 40 1 4.1318 -5.2871 -3.5191 41 1 3.3349 -6.8003 -3.0140 42 1 2.6163 -4.8031 -1.6533 43 1 3.3662 -6.0852 -0.6722 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199414958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:01 Heat of formation + Delta-G solvation = -13.407594 kcal Electronic energy + Delta-G solvation = -23620.998467 eV Core-core repulsion = 20279.553861 eV Total energy + Delta-G solvation = -3341.444606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.33350 -40.69608 -38.44927 -37.11309 -35.39578 -33.50159 -31.89884 -31.53017 -30.93387 -28.93876 -28.27539 -25.25044 -23.85443 -23.45857 -23.20822 -21.71927 -21.36449 -20.69501 -18.82234 -17.95850 -17.33246 -16.98666 -16.83198 -16.40911 -15.65174 -15.54483 -15.42262 -14.95341 -14.87567 -14.60918 -14.55244 -14.21112 -14.00457 -13.95813 -13.48445 -13.21969 -13.20267 -12.81719 -12.68670 -12.61667 -12.48608 -12.29786 -11.96146 -11.85017 -11.41108 -11.27652 -11.11815 -10.85816 -10.81947 -10.71122 -10.54358 -10.04406 -9.48176 -8.16757 -6.11352 0.34066 1.39283 1.42264 1.43073 1.50294 1.65211 2.28019 2.38581 2.41481 3.10440 3.32411 3.59430 3.82757 3.90043 4.00409 4.15203 4.15984 4.40722 4.42344 4.45530 4.59854 4.65316 4.68870 4.73643 4.79394 4.87132 4.94938 5.02193 5.04838 5.05872 5.15771 5.19634 5.22670 5.35684 5.51284 5.54269 5.63524 5.69601 5.75107 5.80717 5.95919 6.34005 6.40131 6.87301 6.93889 7.09407 7.46775 8.93873 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027134 B = 0.003643 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.659184 B = 7684.524936 C = 8038.149217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.095 3.905 3 C -0.151 4.151 4 N -0.404 5.404 5 C -0.007 4.007 6 C -0.046 4.046 7 N -0.466 5.466 8 C 0.102 3.898 9 C 0.600 3.400 10 O -0.572 6.572 11 N -0.692 5.692 12 C 0.168 3.832 13 H 0.065 0.935 14 C -0.102 4.102 15 C 0.010 3.990 16 C -0.500 4.500 17 C 0.026 3.974 18 N -0.929 5.929 19 Si 0.939 3.061 20 H -0.275 1.275 21 H -0.290 1.290 22 H -0.252 1.252 23 C -0.019 4.019 24 C -0.105 4.105 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.044 0.956 28 H 0.103 0.897 29 H 0.045 0.955 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.224 0.776 33 H 0.205 0.795 34 H 0.414 0.586 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.000 1.000 38 H 0.034 0.966 39 H 0.264 0.736 40 H 0.018 0.982 41 H 0.038 0.962 42 H 0.041 0.959 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.315 19.623 10.419 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.006 4.006 3 C -0.208 4.208 4 N -0.085 5.085 5 C -0.146 4.146 6 C -0.200 4.200 7 N -0.189 5.189 8 C -0.156 4.156 9 C 0.385 3.615 10 O -0.451 6.451 11 N -0.341 5.341 12 C 0.065 3.935 13 H 0.083 0.917 14 C -0.140 4.140 15 C -0.027 4.027 16 C -0.519 4.519 17 C -0.173 4.173 18 N -0.568 5.568 19 Si 0.765 3.235 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.177 1.177 23 C -0.057 4.057 24 C -0.144 4.144 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.240 0.760 33 H 0.221 0.779 34 H 0.250 0.750 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.019 0.981 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.950 19.095 9.633 25.002 hybrid contribution -0.443 -0.558 -0.359 0.798 sum -13.392 18.537 9.274 24.678 Atomic orbital electron populations 1.22114 0.91081 1.02575 1.05116 1.22212 0.97164 0.95190 0.86062 1.22112 1.01076 0.92542 1.05110 1.45628 1.34271 1.19991 1.08562 1.23531 1.05077 1.04083 0.81950 1.23035 1.01524 0.94089 1.01334 1.70148 1.21909 1.27352 0.99453 1.22326 1.05523 0.94245 0.93462 1.16805 0.78397 0.80301 0.85950 1.90692 1.60467 1.68498 1.25485 1.45904 1.49822 1.27003 1.11348 1.20781 0.93949 0.92424 0.86367 0.91663 1.21722 0.94777 0.97943 0.99583 1.19289 0.96382 0.94460 0.92617 1.20585 0.96983 0.95327 1.38983 1.25570 0.97266 0.98595 0.95878 1.69957 1.23250 1.14451 1.49172 0.85838 0.81027 0.77606 0.79026 1.20071 1.21667 1.17653 1.19783 0.95339 0.96483 0.94071 1.21783 0.96420 0.97151 0.99072 0.89619 0.88534 0.93711 0.87866 0.93587 0.88539 0.89637 0.75965 0.77862 0.74978 0.92593 0.92412 0.98128 0.94697 0.92715 0.96369 0.94380 0.94029 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.24 71.98 0.67 -1.40 16 2 C 0.10 1.83 3.50 44.99 0.16 1.99 16 3 C -0.15 -2.02 9.25 71.98 0.67 -1.35 16 4 N -0.40 -9.18 2.62 -494.04 -1.29 -10.47 16 5 C -0.01 -0.11 10.53 83.53 0.88 0.77 16 6 C -0.05 -0.92 11.85 83.88 0.99 0.07 16 7 N -0.47 -13.24 10.89 -189.52 -2.06 -15.30 16 8 C 0.10 3.06 7.79 136.28 1.06 4.13 16 9 C 0.60 21.29 7.77 86.66 0.67 21.96 16 10 O -0.57 -22.56 14.02 -4.03 -0.06 -22.62 16 11 N -0.69 -24.32 5.07 -445.95 -2.26 -26.59 16 12 C 0.17 6.77 2.35 44.96 0.11 6.88 16 13 H 0.07 2.85 7.57 -2.39 -0.02 2.83 16 14 C -0.10 -4.26 5.40 30.66 0.17 -4.10 16 15 C 0.01 0.53 5.96 30.11 0.18 0.71 16 16 C -0.50 -26.60 5.51 -16.17 -0.09 -26.68 16 17 C 0.03 1.41 5.46 84.66 0.46 1.87 16 18 N -0.93 -54.51 12.74 21.45 0.27 -54.24 16 19 Si 0.94 43.55 27.53 68.60 1.89 45.44 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 22 H -0.25 -11.08 6.10 99.48 0.61 -10.48 16 23 C -0.02 -0.89 5.59 30.10 0.17 -0.72 16 24 C -0.11 -4.48 5.50 30.66 0.17 -4.31 16 25 H 0.08 0.75 7.95 -2.39 -0.02 0.74 16 26 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.10 2.76 5.35 -2.39 -0.01 2.75 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 0.73 7.95 -2.39 -0.02 0.71 16 32 H 0.22 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.20 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.41 13.33 8.28 -92.71 -0.77 12.56 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.03 1.93 7.08 -2.39 -0.02 1.91 16 39 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.04 1.77 4.59 -2.39 -0.01 1.76 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -67.99 343.53 2.89 -65.10 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.14 Total: 18.86 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 6.26 Total: -0.19 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -5.35 Total: -106.59 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.06 Total: -22.62 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.89 Total: 45.44 kcal Total: -67.99 2.89 -65.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199414958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.697 kcal (2) G-P(sol) polarization free energy of solvation -67.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds