Wall clock time and date at job start Tue Mar 31 2020 07:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36450 * 124.85067 * 2 1 4 4 C 1.34480 * 108.85415 * 180.02562 * 3 2 1 5 5 C 1.46680 * 106.33550 * 0.02562 * 4 3 2 6 6 C 1.47266 * 126.94175 * 179.97438 * 5 4 3 7 7 O 1.21632 * 120.00079 * 207.50943 * 6 5 4 8 8 N 1.34774 * 120.00233 * 27.23468 * 6 5 4 9 9 C 1.46935 * 120.62643 * 6.12615 * 8 6 5 10 10 C 1.53626 * 108.54094 * 126.36758 * 9 8 6 11 11 C 1.53042 * 109.23995 * 54.85568 * 10 9 8 12 12 C 1.52998 * 109.46155 * 178.48788 * 11 10 9 13 13 N 1.46510 * 109.47131 * 295.07260 * 12 11 10 14 14 C 1.36932 * 119.99716 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00562 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99884 * 179.97438 * 14 13 12 17 17 N 1.31616 * 119.99785 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00448 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46700 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46871 * 119.99695 * 18 16 14 21 21 H 1.48492 * 109.47356 * 240.00043 * 18 16 14 22 22 C 1.53036 * 109.54141 * 298.51198 * 11 10 9 23 23 C 1.46925 * 120.63427 * 186.40576 * 8 6 5 24 24 C 1.34654 * 124.85152 * 180.31887 * 2 1 3 25 25 H 1.09002 * 109.47428 * 89.97326 * 1 2 3 26 26 H 1.09007 * 109.47235 * 209.97140 * 1 2 3 27 27 H 1.08996 * 109.47311 * 329.96978 * 1 2 3 28 28 H 1.08001 * 125.56772 * 0.07894 * 3 2 1 29 29 H 1.08005 * 126.82899 * 179.97438 * 4 3 2 30 30 H 1.08993 * 109.58435 * 246.19830 * 9 8 6 31 31 H 1.09002 * 109.58681 * 6.63045 * 9 8 6 32 32 H 1.09002 * 109.63866 * 294.87029 * 10 9 8 33 33 H 1.08994 * 109.43346 * 174.72182 * 10 9 8 34 34 H 1.09004 * 109.45029 * 58.52389 * 11 10 9 35 35 H 1.09007 * 109.47084 * 55.06936 * 12 11 10 36 36 H 1.09000 * 109.47735 * 175.07043 * 12 11 10 37 37 H 0.96996 * 119.99906 * 359.97438 * 13 12 11 38 38 H 0.97006 * 120.00149 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.49457 * 301.41023 * 22 11 10 40 40 H 1.08999 * 109.52755 * 181.33388 * 22 11 10 41 41 H 1.08997 * 109.58497 * 353.37738 * 23 8 6 42 42 H 1.09001 * 109.58442 * 113.65979 * 23 8 6 43 43 H 1.08000 * 125.80162 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1198 0.0000 4 6 3.5375 0.7492 -0.0006 5 6 3.5462 -0.7176 -0.0016 6 6 4.7284 -1.5957 -0.0030 7 8 4.6592 -2.7080 -0.4902 8 7 5.8885 -1.1648 0.5306 9 6 5.9556 0.1226 1.2358 10 6 6.5549 -0.1149 2.6303 11 6 7.9039 -0.8230 2.4855 12 6 8.5229 -1.0284 3.8696 13 7 8.8292 0.2744 4.4658 14 6 9.3930 0.3415 5.7118 15 1 9.6117 -0.5658 6.2553 16 6 9.6837 1.5758 6.2765 17 7 9.4178 2.6816 5.6140 18 14 10.4523 1.6676 7.9766 19 1 10.6506 0.2939 8.5049 20 1 11.7641 2.3583 7.8902 21 1 9.5539 2.4233 8.8859 22 6 7.6992 -2.1818 1.8119 23 6 7.1116 -1.9704 0.4130 24 6 2.2345 -1.1050 -0.0061 25 1 -0.3634 0.0005 -1.0277 26 1 -0.3634 -0.8903 0.5134 27 1 -0.3634 0.8897 0.5143 28 1 1.8828 2.1373 0.0012 29 1 4.3981 1.4018 -0.0011 30 1 6.5869 0.8130 0.6765 31 1 4.9528 0.5384 1.3335 32 1 5.8793 -0.7361 3.2184 33 1 6.6985 0.8424 3.1311 34 1 8.5708 -0.2126 1.8765 35 1 7.8186 -1.5631 4.5069 36 1 9.4404 -1.6093 3.7748 37 1 8.6325 1.0893 3.9778 38 1 9.6205 3.5442 6.0087 39 1 7.0128 -2.7834 2.4077 40 1 8.6568 -2.6960 1.7303 41 1 6.8717 -2.9359 -0.0323 42 1 7.8342 -1.4482 -0.2140 43 1 1.8767 -2.1240 -0.0114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204967879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:12 Heat of formation + Delta-G solvation = 30.550876 kcal Electronic energy + Delta-G solvation = -23142.126624 eV Core-core repulsion = 19802.588200 eV Total energy + Delta-G solvation = -3339.538424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.44978 -39.59922 -37.40068 -34.82380 -33.34396 -32.51281 -30.90702 -30.20520 -29.34447 -27.22763 -26.32694 -23.94581 -23.11352 -22.43359 -21.04566 -20.54559 -19.83638 -18.89849 -17.42459 -17.01937 -16.17253 -15.63417 -15.56913 -14.93387 -14.66477 -14.28420 -14.15159 -13.67926 -13.63255 -13.51754 -13.22661 -13.10020 -12.89056 -12.59619 -12.47600 -12.26296 -12.03858 -11.93291 -11.63970 -11.01863 -10.92859 -10.82491 -10.31351 -10.19842 -10.16496 -9.90852 -9.67690 -9.59418 -8.83884 -8.70362 -8.55862 -8.30518 -6.86675 -5.73422 -3.00899 1.76521 2.27757 2.59865 3.24547 3.45282 3.51109 3.53154 3.53440 4.39818 4.62443 4.69935 4.74861 4.78368 4.93276 5.00516 5.08609 5.17229 5.30767 5.33831 5.36794 5.52106 5.60897 5.67439 5.76240 5.80516 5.88412 5.98197 6.08987 6.12907 6.21073 6.31188 6.39650 6.55447 6.58640 6.63793 6.76631 6.86511 6.92126 7.01321 7.02647 7.64200 7.74334 8.41147 8.46201 9.57333 10.16441 10.51440 11.49741 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020287 B = 0.003306 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.894279 B = 8467.147754 C = 9433.624857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.449 5.449 3 C -0.017 4.017 4 C -0.171 4.171 5 C -0.227 4.227 6 C 0.592 3.408 7 O -0.562 6.562 8 N -0.602 5.602 9 C 0.092 3.908 10 C -0.124 4.124 11 C -0.094 4.094 12 C 0.158 3.842 13 N -0.732 5.732 14 C -0.235 4.235 15 H 0.070 0.930 16 C -0.016 4.016 17 N -0.934 5.934 18 Si 0.905 3.095 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.125 4.125 23 C 0.114 3.886 24 C 0.067 3.933 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.167 0.833 29 H 0.153 0.847 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.017 0.983 36 H 0.018 0.982 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.379 -4.274 -14.020 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.125 5.125 3 C -0.144 4.144 4 C -0.195 4.195 5 C -0.237 4.237 6 C 0.382 3.618 7 O -0.442 6.442 8 N -0.334 5.334 9 C -0.030 4.030 10 C -0.162 4.162 11 C -0.113 4.113 12 C 0.030 3.970 13 N -0.376 5.376 14 C -0.367 4.367 15 H 0.088 0.912 16 C -0.212 4.212 17 N -0.584 5.584 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.164 4.164 23 C -0.008 4.008 24 C -0.068 4.068 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.185 0.815 29 H 0.171 0.829 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.217 0.783 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -17.695 -4.882 -14.104 23.149 hybrid contribution 0.426 0.545 0.927 1.157 sum -17.269 -4.337 -13.176 22.150 Atomic orbital electron populations 1.22105 0.76995 1.04675 1.03432 1.43599 1.06704 1.05930 1.56281 1.21800 0.90589 0.91286 1.10714 1.22250 0.96244 0.93209 1.07771 1.20325 0.92486 0.93551 1.17326 1.17434 0.82009 0.85271 0.77043 1.90731 1.84433 1.20948 1.48091 1.47904 1.08810 1.21617 1.55068 1.22446 1.03204 0.84373 0.92988 1.21995 0.96417 1.02356 0.95419 1.21309 0.96631 0.95595 0.97767 1.20678 0.96018 0.89559 0.90715 1.42390 1.74773 1.02142 1.18316 1.19291 1.32002 0.92384 0.92984 0.91247 1.24720 1.02365 0.95391 0.98678 1.69665 1.54141 0.96709 1.37845 0.86131 0.78620 0.77287 0.84268 1.20614 1.21927 1.21928 1.21895 1.01043 0.97938 0.95484 1.21588 0.85337 0.96510 0.97408 1.21702 0.89736 0.91674 1.03704 0.90752 0.89669 0.89557 0.81543 0.82911 0.91598 0.87886 0.91957 0.89602 0.91083 0.96477 0.96434 0.78264 0.93653 0.91661 0.90831 0.89351 0.91704 0.81125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 11.03 59.85 0.66 0.96 16 2 N -0.45 -3.85 3.09 -124.53 -0.38 -4.23 16 3 C -0.02 -0.16 11.34 -16.83 -0.19 -0.35 16 4 C -0.17 -1.87 8.63 -37.50 -0.32 -2.19 16 5 C -0.23 -2.97 5.71 -103.35 -0.59 -3.56 16 6 C 0.59 9.21 7.64 -12.59 -0.10 9.11 16 7 O -0.56 -10.27 16.43 5.25 0.09 -10.18 16 8 N -0.60 -8.64 2.97 -173.82 -0.52 -9.15 16 9 C 0.09 1.22 5.30 -3.48 -0.02 1.21 16 10 C -0.12 -1.95 5.26 -26.38 -0.14 -2.09 16 11 C -0.09 -1.55 2.19 -90.58 -0.20 -1.74 16 12 C 0.16 3.24 5.65 -4.04 -0.02 3.22 16 13 N -0.73 -18.61 5.32 -59.90 -0.32 -18.92 16 14 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 15 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 16 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 17 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 18 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 22 C -0.12 -1.77 5.36 -26.62 -0.14 -1.91 16 23 C 0.11 1.56 6.44 -3.71 -0.02 1.54 16 24 C 0.07 0.73 11.22 -16.85 -0.19 0.54 16 25 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.08 0.27 8.13 -51.93 -0.42 -0.15 16 27 H 0.09 0.24 8.13 -51.93 -0.42 -0.18 16 28 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 29 H 0.15 1.51 6.49 -52.48 -0.34 1.17 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.27 4.02 -51.93 -0.21 1.07 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.51 7.15 -51.93 -0.37 1.14 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.38 10.08 6.84 -40.82 -0.28 9.80 16 38 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -34.69 346.28 -8.34 -43.02 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.60 Total: 6.83 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.52 Total: -2.65 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.49 Total: -59.79 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.69 -8.34 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204967879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.574 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds