Wall clock time and date at job start Tue Mar 31 2020 07:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36450 * 124.85067 * 2 1 4 4 C 1.34480 * 108.85415 * 180.02562 * 3 2 1 5 5 C 1.46680 * 106.33550 * 0.02562 * 4 3 2 6 6 C 1.47266 * 126.94175 * 179.97438 * 5 4 3 7 7 O 1.21632 * 120.00079 * 207.50943 * 6 5 4 8 8 N 1.34774 * 120.00233 * 27.23468 * 6 5 4 9 9 C 1.46935 * 120.62643 * 6.12615 * 8 6 5 10 10 C 1.53626 * 108.54094 * 126.36758 * 9 8 6 11 11 C 1.53042 * 109.23995 * 54.85568 * 10 9 8 12 12 C 1.52998 * 109.46155 * 178.48788 * 11 10 9 13 13 N 1.46510 * 109.47131 * 295.07260 * 12 11 10 14 14 C 1.36932 * 119.99716 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00562 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99884 * 179.97438 * 14 13 12 17 17 N 1.31616 * 119.99785 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00448 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46700 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46871 * 119.99695 * 18 16 14 21 21 H 1.48492 * 109.47356 * 240.00043 * 18 16 14 22 22 C 1.53036 * 109.54141 * 298.51198 * 11 10 9 23 23 C 1.46925 * 120.63427 * 186.40576 * 8 6 5 24 24 C 1.34654 * 124.85152 * 180.31887 * 2 1 3 25 25 H 1.09002 * 109.47428 * 89.97326 * 1 2 3 26 26 H 1.09007 * 109.47235 * 209.97140 * 1 2 3 27 27 H 1.08996 * 109.47311 * 329.96978 * 1 2 3 28 28 H 1.08001 * 125.56772 * 0.07894 * 3 2 1 29 29 H 1.08005 * 126.82899 * 179.97438 * 4 3 2 30 30 H 1.08993 * 109.58435 * 246.19830 * 9 8 6 31 31 H 1.09002 * 109.58681 * 6.63045 * 9 8 6 32 32 H 1.09002 * 109.63866 * 294.87029 * 10 9 8 33 33 H 1.08994 * 109.43346 * 174.72182 * 10 9 8 34 34 H 1.09004 * 109.45029 * 58.52389 * 11 10 9 35 35 H 1.09007 * 109.47084 * 55.06936 * 12 11 10 36 36 H 1.09000 * 109.47735 * 175.07043 * 12 11 10 37 37 H 0.96996 * 119.99906 * 359.97438 * 13 12 11 38 38 H 0.97006 * 120.00149 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.49457 * 301.41023 * 22 11 10 40 40 H 1.08999 * 109.52755 * 181.33388 * 22 11 10 41 41 H 1.08997 * 109.58497 * 353.37738 * 23 8 6 42 42 H 1.09001 * 109.58442 * 113.65979 * 23 8 6 43 43 H 1.08000 * 125.80162 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1198 0.0000 4 6 3.5375 0.7492 -0.0006 5 6 3.5462 -0.7176 -0.0016 6 6 4.7284 -1.5957 -0.0030 7 8 4.6592 -2.7080 -0.4902 8 7 5.8885 -1.1648 0.5306 9 6 5.9556 0.1226 1.2358 10 6 6.5549 -0.1149 2.6303 11 6 7.9039 -0.8230 2.4855 12 6 8.5229 -1.0284 3.8696 13 7 8.8292 0.2744 4.4658 14 6 9.3930 0.3415 5.7118 15 1 9.6117 -0.5658 6.2553 16 6 9.6837 1.5758 6.2765 17 7 9.4178 2.6816 5.6140 18 14 10.4523 1.6676 7.9766 19 1 10.6506 0.2939 8.5049 20 1 11.7641 2.3583 7.8902 21 1 9.5539 2.4233 8.8859 22 6 7.6992 -2.1818 1.8119 23 6 7.1116 -1.9704 0.4130 24 6 2.2345 -1.1050 -0.0061 25 1 -0.3634 0.0005 -1.0277 26 1 -0.3634 -0.8903 0.5134 27 1 -0.3634 0.8897 0.5143 28 1 1.8828 2.1373 0.0012 29 1 4.3981 1.4018 -0.0011 30 1 6.5869 0.8130 0.6765 31 1 4.9528 0.5384 1.3335 32 1 5.8793 -0.7361 3.2184 33 1 6.6985 0.8424 3.1311 34 1 8.5708 -0.2126 1.8765 35 1 7.8186 -1.5631 4.5069 36 1 9.4404 -1.6093 3.7748 37 1 8.6325 1.0893 3.9778 38 1 9.6205 3.5442 6.0087 39 1 7.0128 -2.7834 2.4077 40 1 8.6568 -2.6960 1.7303 41 1 6.8717 -2.9359 -0.0323 42 1 7.8342 -1.4482 -0.2140 43 1 1.8767 -2.1240 -0.0114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204967879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:11 Heat of formation + Delta-G solvation = 9.032771 kcal Electronic energy + Delta-G solvation = -23143.059719 eV Core-core repulsion = 19802.588200 eV Total energy + Delta-G solvation = -3340.471519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.23474 -40.72044 -38.73382 -36.51325 -34.58991 -33.71107 -32.25504 -31.81495 -30.14869 -28.39284 -27.37912 -25.59792 -24.32950 -23.82464 -22.31871 -21.42858 -20.97598 -19.90327 -19.12336 -18.26105 -17.29536 -16.72956 -16.49137 -16.37105 -15.88092 -15.60295 -15.40329 -15.29766 -14.97609 -14.53663 -14.47953 -14.16251 -13.97160 -13.70161 -13.44352 -13.20881 -13.10602 -12.96523 -12.94185 -12.79423 -12.74138 -12.18349 -12.08989 -11.94429 -11.66043 -11.43040 -11.29506 -10.93721 -10.82956 -9.69390 -9.39397 -9.23032 -8.96597 -7.93387 -5.21318 0.83822 1.48396 1.48798 1.52459 1.58978 1.91081 2.24036 2.48695 2.57429 3.39901 3.71773 3.80088 3.86892 4.00186 4.04544 4.08919 4.15606 4.27907 4.36681 4.40433 4.49340 4.50384 4.60033 4.63681 4.76178 4.76807 4.86979 4.88768 4.99039 5.02438 5.06201 5.09121 5.13183 5.19402 5.33721 5.49270 5.55743 5.66159 5.78397 6.10490 6.29579 6.37562 6.52489 7.26306 7.36155 8.12022 8.37223 9.30194 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020287 B = 0.003306 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.894279 B = 8467.147754 C = 9433.624857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.444 5.444 3 C -0.007 4.007 4 C -0.192 4.192 5 C -0.264 4.264 6 C 0.586 3.414 7 O -0.599 6.599 8 N -0.603 5.603 9 C 0.102 3.898 10 C -0.117 4.117 11 C -0.084 4.084 12 C 0.158 3.842 13 N -0.742 5.742 14 C -0.245 4.245 15 H 0.071 0.929 16 C -0.073 4.073 17 N -0.966 5.966 18 Si 0.971 3.029 19 H -0.269 1.269 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.114 4.114 23 C 0.114 3.886 24 C 0.064 3.936 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.201 0.799 29 H 0.158 0.842 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.012 0.988 36 H 0.019 0.981 37 H 0.377 0.623 38 H 0.252 0.748 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.581 -3.884 -14.226 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.118 5.118 3 C -0.134 4.134 4 C -0.215 4.215 5 C -0.274 4.274 6 C 0.378 3.622 7 O -0.483 6.483 8 N -0.334 5.334 9 C -0.020 4.020 10 C -0.155 4.155 11 C -0.103 4.103 12 C 0.031 3.969 13 N -0.385 5.385 14 C -0.377 4.377 15 H 0.089 0.911 16 C -0.266 4.266 17 N -0.617 5.617 18 Si 0.801 3.199 19 H -0.194 1.194 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.153 4.153 23 C -0.008 4.008 24 C -0.073 4.073 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.218 0.782 29 H 0.176 0.824 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.030 0.970 36 H 0.037 0.963 37 H 0.209 0.791 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -18.914 -4.508 -14.310 24.142 hybrid contribution 0.717 0.395 0.970 1.270 sum -18.197 -4.113 -13.340 22.935 Atomic orbital electron populations 1.22443 0.74245 1.06281 1.04880 1.43916 1.08354 1.05089 1.54426 1.22319 0.90000 0.92647 1.08408 1.22376 0.97651 0.92215 1.09273 1.20356 0.92423 0.94501 1.20156 1.17878 0.82787 0.85119 0.76374 1.90692 1.85073 1.22614 1.49895 1.47981 1.08845 1.21834 1.54763 1.22419 1.04015 0.84200 0.91340 1.21877 0.95992 1.00864 0.96763 1.21198 0.96567 0.97051 0.95459 1.20806 0.96053 0.87428 0.92594 1.42556 1.74573 1.03575 1.17778 1.19647 1.31502 0.92520 0.94067 0.91110 1.25519 1.03491 0.95144 1.02431 1.69807 1.55466 0.97008 1.39429 0.85102 0.77382 0.77587 0.79857 1.19391 1.21936 1.21896 1.21800 1.01732 0.96362 0.95398 1.21611 0.85493 0.96599 0.97075 1.21870 0.89580 0.92787 1.03068 0.89337 0.88599 0.87558 0.78244 0.82446 0.90310 0.86664 0.93041 0.91625 0.91075 0.97028 0.96295 0.79077 0.93956 0.92443 0.89292 0.89869 0.90147 0.80405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 11.03 127.77 1.41 1.74 16 2 N -0.44 -6.56 3.09 -547.89 -1.69 -8.25 16 3 C -0.01 -0.10 11.34 83.11 0.94 0.84 16 4 C -0.19 -3.95 8.63 23.62 0.20 -3.75 16 5 C -0.26 -6.82 5.71 -19.04 -0.11 -6.93 16 6 C 0.59 18.37 7.64 86.62 0.66 19.03 16 7 O -0.60 -22.38 16.43 -4.13 -0.07 -22.44 16 8 N -0.60 -17.14 2.97 -822.10 -2.44 -19.58 16 9 C 0.10 2.66 5.30 86.51 0.46 3.12 16 10 C -0.12 -3.69 5.26 30.82 0.16 -3.53 16 11 C -0.08 -2.73 2.19 -10.77 -0.02 -2.75 16 12 C 0.16 6.48 5.65 86.38 0.49 6.97 16 13 N -0.74 -38.05 5.32 -343.42 -1.83 -39.88 16 14 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 15 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 16 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 17 N -0.97 -58.78 13.06 21.65 0.28 -58.50 16 18 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 22 C -0.11 -3.16 5.36 30.67 0.16 -2.99 16 23 C 0.11 3.06 6.44 86.36 0.56 3.62 16 24 C 0.06 1.33 11.22 83.92 0.94 2.27 16 25 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.10 0.35 8.13 -2.38 -0.02 0.33 16 27 H 0.11 0.20 8.13 -2.39 -0.02 0.18 16 28 H 0.20 1.60 8.06 -2.91 -0.02 1.57 16 29 H 0.16 2.93 6.49 -2.91 -0.02 2.91 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.12 2.78 4.02 -2.39 -0.01 2.77 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 2.36 7.15 -2.39 -0.02 2.34 16 34 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 37 H 0.38 20.14 6.84 -92.71 -0.63 19.50 16 38 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.08 2.36 7.00 -2.39 -0.02 2.34 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.18 3.29 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -74.85 346.28 3.82 -71.04 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.37 Total: 28.39 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 7.16 Total: 0.79 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -5.67 Total: -126.21 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.07 Total: -22.44 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -74.85 3.82 -71.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204967879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.069 kcal (2) G-P(sol) polarization free energy of solvation -74.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds