Wall clock time and date at job start Tue Mar 31 2020 07:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35457 * 117.00308 * 2 1 4 4 N 1.32320 * 119.19919 * 180.02562 * 3 2 1 5 5 C 1.32298 * 120.76322 * 180.02562 * 4 3 2 6 6 C 1.38594 * 119.16994 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.73390 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47058 * 88.29815 * 7 6 5 9 9 C 1.46903 * 110.99860 * 193.06787 * 8 7 6 10 10 C 1.50691 * 109.46800 * 146.07183 * 9 8 7 11 11 H 1.08000 * 120.00634 * 355.93636 * 10 9 8 12 12 C 1.37885 * 119.99971 * 175.93917 * 10 9 8 13 13 N 1.31514 * 119.99592 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00168 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47134 * 89.99856 * 14 12 10 16 16 H 1.48504 * 109.46933 * 210.00302 * 14 12 10 17 17 H 1.48508 * 109.46882 * 329.99922 * 14 12 10 18 18 C 1.46895 * 110.99796 * 69.11461 * 8 7 6 19 19 C 1.54268 * 110.03115 * 193.33576 * 18 8 7 20 20 C 1.54960 * 104.16212 * 217.13476 * 19 18 8 21 21 C 1.54891 * 102.77746 * 37.89264 * 20 19 18 22 22 C 1.53882 * 110.03374 * 76.12235 * 18 8 7 23 23 C 1.38584 * 118.52436 * 0.27555 * 6 5 4 24 24 N 1.32305 * 119.17458 * 359.42673 * 23 6 5 25 25 H 1.08996 * 109.47181 * 59.99595 * 1 2 3 26 26 H 1.08998 * 109.47144 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46281 * 299.99680 * 1 2 3 28 28 H 1.07990 * 120.41323 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.47213 * 328.29836 * 7 6 5 30 30 H 1.08999 * 109.47029 * 208.29786 * 7 6 5 31 31 H 1.09002 * 109.47029 * 266.07147 * 9 8 7 32 32 H 1.08999 * 109.46877 * 26.07357 * 9 8 7 33 33 H 0.97002 * 119.99458 * 180.02562 * 13 12 10 34 34 H 1.09003 * 110.02049 * 314.72645 * 18 8 7 35 35 H 1.08992 * 110.48710 * 335.78876 * 19 18 8 36 36 H 1.09003 * 110.48362 * 98.42955 * 19 18 8 37 37 H 1.09000 * 110.72251 * 279.57378 * 20 19 18 38 38 H 1.09008 * 110.92128 * 156.29372 * 20 19 18 39 39 H 1.09003 * 110.49015 * 203.40515 * 21 20 19 40 40 H 1.09000 * 110.60210 * 80.81378 * 21 20 19 41 41 H 1.08999 * 110.03095 * 238.56553 * 22 18 8 42 42 H 1.09001 * 110.03192 * 359.97438 * 22 18 8 43 43 H 1.08003 * 120.41622 * 179.72323 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2069 0.0000 4 7 3.3663 1.2576 -0.0005 5 6 3.9989 2.4195 0.0000 6 6 3.2591 3.5915 0.0005 7 6 3.9433 4.9342 0.0005 8 7 4.2018 5.3521 -1.3840 9 6 5.1308 6.4893 -1.4259 10 6 5.9972 6.3850 -2.6544 11 1 5.9160 5.5237 -3.3010 12 6 6.8937 7.3891 -2.9531 13 7 6.9929 8.4376 -2.1655 14 14 7.9681 7.2595 -4.4757 15 1 7.2690 7.8804 -5.6292 16 1 9.2525 7.9657 -4.2367 17 1 8.2372 5.8293 -4.7714 18 6 2.9482 5.6705 -2.0804 19 6 3.2001 5.7795 -3.5985 20 6 2.2762 6.9373 -4.0538 21 6 2.3755 7.9383 -2.8760 22 6 2.4237 7.0423 -1.6211 23 6 1.8762 3.5011 0.0064 24 7 1.3079 2.3064 -0.0003 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 5.0783 2.4543 0.0000 29 1 4.8875 4.8609 0.5401 30 1 3.3023 5.6687 0.4881 31 1 4.5645 7.4201 -1.4585 32 1 5.7597 6.4776 -0.5357 33 1 7.6233 9.1442 -2.3758 34 1 2.2038 4.8999 -1.8798 35 1 4.2437 6.0244 -3.7954 36 1 2.9242 4.8511 -4.0986 37 1 1.2515 6.5870 -4.1779 38 1 2.6430 7.3883 -4.9760 39 1 1.4982 8.5847 -2.8497 40 1 3.2849 8.5340 -2.9546 41 1 1.4245 6.9376 -1.1985 42 1 3.0992 7.4717 -0.8811 43 1 1.2699 4.3949 0.0114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206400442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:44 Heat of formation + Delta-G solvation = 25.558417 kcal Electronic energy + Delta-G solvation = -23946.918596 eV Core-core repulsion = 20607.163682 eV Total energy + Delta-G solvation = -3339.754913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17744 -38.93466 -38.12420 -34.70658 -33.71056 -32.87359 -31.34588 -28.18758 -27.96983 -27.52124 -26.70624 -24.51240 -24.34103 -22.17138 -21.69891 -20.01515 -18.79023 -18.40941 -17.80742 -16.41202 -16.37765 -15.94961 -15.21922 -15.06522 -14.56470 -14.37670 -14.28211 -14.17726 -13.56209 -13.38027 -13.01012 -12.55271 -12.36764 -12.10100 -11.76783 -11.39265 -11.32010 -11.12380 -10.96007 -10.78967 -10.75627 -10.60160 -10.56076 -10.39570 -10.35409 -10.21050 -9.92435 -9.43621 -9.15249 -9.08232 -8.73770 -8.39307 -7.28529 -6.03965 -4.02499 1.11642 1.15400 2.61147 3.30230 3.37621 3.41601 3.83572 4.08567 4.40835 4.75987 4.78091 4.87698 5.04771 5.07874 5.13114 5.14605 5.25487 5.30263 5.32831 5.42701 5.56054 5.77559 5.91532 6.01260 6.04689 6.11937 6.18344 6.24684 6.29441 6.33243 6.40283 6.54253 6.59558 6.78742 6.85602 6.87997 7.12233 7.18041 7.35026 7.40938 7.81866 8.09938 8.14408 8.16966 8.49832 9.02734 9.58933 11.05314 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019309 B = 0.004418 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.721808 B = 6335.694627 C = 6941.815943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.295 6.295 3 C 0.483 3.517 4 N -0.525 5.525 5 C 0.205 3.795 6 C -0.200 4.200 7 C 0.102 3.898 8 N -0.525 5.525 9 C 0.180 3.820 10 C -0.494 4.494 11 H 0.066 0.934 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.890 3.110 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.273 1.273 18 C 0.090 3.910 19 C -0.131 4.131 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.156 4.156 23 C 0.184 3.816 24 N -0.570 5.570 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.179 0.821 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.025 0.975 32 H 0.019 0.981 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.121 0.879 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.075 0.925 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.097 -7.674 4.094 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.196 6.196 3 C 0.180 3.820 4 N -0.250 5.250 5 C 0.039 3.961 6 C -0.205 4.205 7 C -0.027 4.027 8 N -0.248 5.248 9 C 0.056 3.944 10 C -0.533 4.533 11 H 0.084 0.916 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.718 3.282 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.198 1.198 18 C -0.019 4.019 19 C -0.169 4.169 20 C -0.159 4.159 21 C -0.153 4.153 22 C -0.195 4.195 23 C 0.019 3.981 24 N -0.299 5.299 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.079 0.921 28 H 0.196 0.804 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.139 0.861 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.180 -9.136 3.879 15.712 hybrid contribution 0.325 1.666 -0.425 1.750 sum -11.855 -7.470 3.455 14.432 Atomic orbital electron populations 1.22923 0.76157 1.03140 1.02707 1.86058 1.22989 1.23043 1.87540 1.20676 0.86393 0.84613 0.90300 1.67615 1.07523 1.30648 1.19204 1.23061 1.00905 0.85022 0.87129 1.21610 0.95397 0.98865 1.04596 1.20873 0.99206 0.89843 0.92802 1.62380 1.11386 1.40468 1.10573 1.20022 0.89962 0.86895 0.97548 1.21145 1.18889 1.04868 1.08351 0.91558 1.24955 0.97285 0.95446 0.96824 1.69940 1.37024 1.09180 1.37648 0.86617 0.80005 0.78258 0.83313 1.20776 1.21395 1.19771 1.22226 0.90757 0.93617 0.95298 1.22803 1.04253 0.96290 0.93515 1.22423 0.98525 0.96985 0.97937 1.22234 1.01235 0.97351 0.94496 1.22839 0.99756 0.97884 0.99011 1.22828 0.92348 0.93965 0.88979 1.67999 1.41495 0.99187 1.21182 0.92043 0.88200 0.92124 0.80395 0.89677 0.94373 0.95757 0.96273 0.93015 0.92421 0.86100 0.93621 0.93202 0.92226 0.93313 0.90640 0.93526 0.90620 0.81736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.45 10.36 101.05 1.05 1.50 16 2 O -0.29 -4.19 10.55 -18.06 -0.19 -4.38 16 3 C 0.48 7.59 8.49 -91.25 -0.77 6.82 16 4 N -0.53 -8.57 10.46 -14.74 -0.15 -8.72 16 5 C 0.20 3.03 11.01 -17.22 -0.19 2.84 16 6 C -0.20 -2.89 4.98 -104.36 -0.52 -3.41 16 7 C 0.10 1.59 4.95 -4.97 -0.02 1.57 16 8 N -0.52 -9.93 4.33 -228.17 -0.99 -10.92 16 9 C 0.18 4.14 4.34 -4.98 -0.02 4.11 16 10 C -0.49 -12.64 7.18 -34.44 -0.25 -12.89 16 11 H 0.07 1.73 6.91 -52.49 -0.36 1.36 16 12 C 0.06 1.48 5.46 -17.82 -0.10 1.39 16 13 N -0.90 -25.02 13.29 55.43 0.74 -24.29 16 14 Si 0.89 20.77 29.54 -169.99 -5.02 15.74 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.09 1.57 2.81 -66.59 -0.19 1.39 16 19 C -0.13 -2.43 6.36 -25.03 -0.16 -2.58 16 20 C -0.12 -1.97 6.91 -24.70 -0.17 -2.15 16 21 C -0.12 -1.94 6.67 -25.07 -0.17 -2.11 16 22 C -0.16 -2.58 5.09 -25.61 -0.13 -2.71 16 23 C 0.18 2.53 9.35 -17.22 -0.16 2.37 16 24 N -0.57 -8.34 9.23 -14.73 -0.14 -8.47 16 25 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.18 2.32 8.06 -52.49 -0.42 1.90 16 29 H 0.08 1.31 7.66 -51.93 -0.40 0.91 16 30 H 0.04 0.56 7.26 -51.93 -0.38 0.18 16 31 H 0.02 0.60 4.69 -51.93 -0.24 0.35 16 32 H 0.02 0.47 7.46 -51.93 -0.39 0.09 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.06 0.94 5.57 -51.93 -0.29 0.65 16 35 H 0.12 2.64 4.29 -51.93 -0.22 2.42 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.48 7.83 -51.93 -0.41 1.07 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.38 5.51 -51.93 -0.29 1.09 16 43 H 0.17 1.91 7.82 -52.48 -0.41 1.50 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -28.96 339.07 -8.76 -37.72 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.32 Total: 2.07 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.80 Total: -3.87 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.54 Total: -52.40 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.19 Total: -4.38 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.96 -8.76 -37.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206400442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.283 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds