Wall clock time and date at job start Tue Mar 31 2020 07:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35457 * 117.00308 * 2 1 4 4 N 1.32320 * 119.19919 * 180.02562 * 3 2 1 5 5 C 1.32298 * 120.76322 * 180.02562 * 4 3 2 6 6 C 1.38594 * 119.16994 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.73390 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47058 * 88.29815 * 7 6 5 9 9 C 1.46903 * 110.99860 * 193.06787 * 8 7 6 10 10 C 1.50691 * 109.46800 * 146.07183 * 9 8 7 11 11 H 1.08000 * 120.00634 * 355.93636 * 10 9 8 12 12 C 1.37885 * 119.99971 * 175.93917 * 10 9 8 13 13 N 1.31514 * 119.99592 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00168 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47134 * 89.99856 * 14 12 10 16 16 H 1.48504 * 109.46933 * 210.00302 * 14 12 10 17 17 H 1.48508 * 109.46882 * 329.99922 * 14 12 10 18 18 C 1.46895 * 110.99796 * 69.11461 * 8 7 6 19 19 C 1.54268 * 110.03115 * 193.33576 * 18 8 7 20 20 C 1.54960 * 104.16212 * 217.13476 * 19 18 8 21 21 C 1.54891 * 102.77746 * 37.89264 * 20 19 18 22 22 C 1.53882 * 110.03374 * 76.12235 * 18 8 7 23 23 C 1.38584 * 118.52436 * 0.27555 * 6 5 4 24 24 N 1.32305 * 119.17458 * 359.42673 * 23 6 5 25 25 H 1.08996 * 109.47181 * 59.99595 * 1 2 3 26 26 H 1.08998 * 109.47144 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46281 * 299.99680 * 1 2 3 28 28 H 1.07990 * 120.41323 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.47213 * 328.29836 * 7 6 5 30 30 H 1.08999 * 109.47029 * 208.29786 * 7 6 5 31 31 H 1.09002 * 109.47029 * 266.07147 * 9 8 7 32 32 H 1.08999 * 109.46877 * 26.07357 * 9 8 7 33 33 H 0.97002 * 119.99458 * 180.02562 * 13 12 10 34 34 H 1.09003 * 110.02049 * 314.72645 * 18 8 7 35 35 H 1.08992 * 110.48710 * 335.78876 * 19 18 8 36 36 H 1.09003 * 110.48362 * 98.42955 * 19 18 8 37 37 H 1.09000 * 110.72251 * 279.57378 * 20 19 18 38 38 H 1.09008 * 110.92128 * 156.29372 * 20 19 18 39 39 H 1.09003 * 110.49015 * 203.40515 * 21 20 19 40 40 H 1.09000 * 110.60210 * 80.81378 * 21 20 19 41 41 H 1.08999 * 110.03095 * 238.56553 * 22 18 8 42 42 H 1.09001 * 110.03192 * 359.97438 * 22 18 8 43 43 H 1.08003 * 120.41622 * 179.72323 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2069 0.0000 4 7 3.3663 1.2576 -0.0005 5 6 3.9989 2.4195 0.0000 6 6 3.2591 3.5915 0.0005 7 6 3.9433 4.9342 0.0005 8 7 4.2018 5.3521 -1.3840 9 6 5.1308 6.4893 -1.4259 10 6 5.9972 6.3850 -2.6544 11 1 5.9160 5.5237 -3.3010 12 6 6.8937 7.3891 -2.9531 13 7 6.9929 8.4376 -2.1655 14 14 7.9681 7.2595 -4.4757 15 1 7.2690 7.8804 -5.6292 16 1 9.2525 7.9657 -4.2367 17 1 8.2372 5.8293 -4.7714 18 6 2.9482 5.6705 -2.0804 19 6 3.2001 5.7795 -3.5985 20 6 2.2762 6.9373 -4.0538 21 6 2.3755 7.9383 -2.8760 22 6 2.4237 7.0423 -1.6211 23 6 1.8762 3.5011 0.0064 24 7 1.3079 2.3064 -0.0003 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 5.0783 2.4543 0.0000 29 1 4.8875 4.8609 0.5401 30 1 3.3023 5.6687 0.4881 31 1 4.5645 7.4201 -1.4585 32 1 5.7597 6.4776 -0.5357 33 1 7.6233 9.1442 -2.3758 34 1 2.2038 4.8999 -1.8798 35 1 4.2437 6.0244 -3.7954 36 1 2.9242 4.8511 -4.0986 37 1 1.2515 6.5870 -4.1779 38 1 2.6430 7.3883 -4.9760 39 1 1.4982 8.5847 -2.8497 40 1 3.2849 8.5340 -2.9546 41 1 1.4245 6.9376 -1.1985 42 1 3.0992 7.4717 -0.8811 43 1 1.2699 4.3949 0.0114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206400442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:43 Heat of formation + Delta-G solvation = 5.278713 kcal Electronic energy + Delta-G solvation = -23947.797990 eV Core-core repulsion = 20607.163682 eV Total energy + Delta-G solvation = -3340.634307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.30310 -40.28520 -39.23692 -36.09060 -34.88528 -34.71788 -32.72559 -29.59397 -29.34416 -28.83283 -27.96681 -25.86197 -25.55952 -23.76868 -23.03766 -21.37706 -19.90967 -19.76202 -18.95669 -18.36108 -17.51545 -17.29976 -16.72426 -16.26775 -16.08000 -15.61245 -15.48618 -15.41527 -14.69590 -14.58095 -14.38637 -14.22017 -13.81692 -13.28144 -13.05000 -12.89498 -12.82907 -12.62506 -12.34720 -12.30920 -12.16004 -12.02677 -11.96464 -11.84073 -11.73616 -11.68557 -11.29332 -11.20700 -10.83157 -10.43716 -10.22813 -9.87055 -8.82335 -8.06535 -6.10410 -0.03307 0.03967 1.42816 1.45299 1.54348 1.62306 2.46084 2.68567 3.02647 3.23963 3.43729 3.68249 3.74550 3.86321 3.88623 3.92622 4.02971 4.24449 4.40630 4.41951 4.58492 4.63445 4.69683 4.73005 4.76169 4.82208 4.89749 4.93659 4.98186 5.04398 5.14492 5.20029 5.25003 5.34199 5.37814 5.54178 5.61654 5.70101 5.78137 5.88125 6.10843 6.25144 6.57563 6.75212 7.01789 7.02200 7.54303 9.01086 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019309 B = 0.004418 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.721808 B = 6335.694627 C = 6941.815943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.474 3.526 4 N -0.550 5.550 5 C 0.200 3.800 6 C -0.202 4.202 7 C 0.108 3.892 8 N -0.534 5.534 9 C 0.196 3.804 10 C -0.492 4.492 11 H 0.058 0.942 12 C 0.009 3.991 13 N -0.931 5.931 14 Si 0.945 3.055 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.270 1.270 18 C 0.091 3.909 19 C -0.137 4.137 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.150 4.150 23 C 0.190 3.810 24 N -0.568 5.568 25 H 0.061 0.939 26 H 0.131 0.869 27 H 0.065 0.935 28 H 0.188 0.812 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.011 0.989 32 H -0.004 1.004 33 H 0.259 0.741 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.255 -8.452 3.928 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.212 6.212 3 C 0.171 3.829 4 N -0.275 5.275 5 C 0.035 3.965 6 C -0.207 4.207 7 C -0.021 4.021 8 N -0.258 5.258 9 C 0.071 3.929 10 C -0.531 4.531 11 H 0.076 0.924 12 C -0.189 4.189 13 N -0.573 5.573 14 Si 0.772 3.228 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.194 1.194 18 C -0.017 4.017 19 C -0.175 4.175 20 C -0.152 4.152 21 C -0.153 4.153 22 C -0.189 4.189 23 C 0.025 3.975 24 N -0.297 5.297 25 H 0.080 0.920 26 H 0.149 0.851 27 H 0.083 0.917 28 H 0.205 0.795 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.015 0.985 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -14.355 -9.941 3.711 17.851 hybrid contribution 0.912 1.826 -0.354 2.071 sum -13.443 -8.115 3.357 16.057 Atomic orbital electron populations 1.23238 0.73891 1.05341 1.02892 1.86058 1.25264 1.22621 1.87219 1.20944 0.86490 0.85399 0.90034 1.67625 1.08279 1.31275 1.20357 1.23270 1.01532 0.85007 0.86705 1.21431 0.95816 0.97827 1.05631 1.20810 0.99669 0.90749 0.90903 1.62218 1.12029 1.38543 1.12976 1.19654 0.90060 0.87900 0.95323 1.21407 1.18718 1.04121 1.08815 0.92395 1.25612 0.98669 0.95381 0.99244 1.70043 1.38023 1.09939 1.39275 0.85748 0.78427 0.78168 0.80498 1.20402 1.21378 1.19450 1.22273 0.90315 0.94788 0.94357 1.22742 1.02502 0.97441 0.94767 1.22401 0.99521 0.95820 0.97418 1.22193 1.00460 0.97552 0.95068 1.22779 1.01003 0.96825 0.98312 1.23236 0.92198 0.94574 0.87487 1.68099 1.41118 0.99145 1.21383 0.92017 0.85101 0.91664 0.79530 0.90045 0.92873 0.97095 0.98549 0.93193 0.90466 0.89881 0.92978 0.90291 0.92615 0.90676 0.94597 0.90107 0.92740 0.79110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 10.36 113.37 1.17 1.87 16 2 O -0.31 -8.34 10.55 -87.54 -0.92 -9.26 16 3 C 0.47 14.19 8.49 180.57 1.53 15.73 16 4 N -0.55 -17.46 10.46 -313.49 -3.28 -20.74 16 5 C 0.20 5.75 11.01 84.71 0.93 6.68 16 6 C -0.20 -5.50 4.98 -19.70 -0.10 -5.60 16 7 C 0.11 3.23 4.95 85.56 0.42 3.65 16 8 N -0.53 -19.97 4.33 -875.80 -3.79 -23.76 16 9 C 0.20 9.21 4.34 85.55 0.37 9.58 16 10 C -0.49 -25.74 7.18 25.60 0.18 -25.56 16 11 H 0.06 3.08 6.91 -2.91 -0.02 3.06 16 12 C 0.01 0.46 5.46 84.66 0.46 0.92 16 13 N -0.93 -53.22 13.29 21.45 0.28 -52.93 16 14 Si 0.94 43.31 29.54 68.60 2.03 45.33 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 C 0.09 3.02 2.81 45.64 0.13 3.15 16 19 C -0.14 -4.92 6.36 31.69 0.20 -4.72 16 20 C -0.11 -3.50 6.91 31.91 0.22 -3.28 16 21 C -0.11 -3.71 6.67 31.67 0.21 -3.49 16 22 C -0.15 -4.66 5.09 31.32 0.16 -4.50 16 23 C 0.19 4.69 9.35 84.70 0.79 5.48 16 24 N -0.57 -15.28 9.23 -313.48 -2.89 -18.18 16 25 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 26 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.05 8.09 -2.38 -0.02 1.03 16 28 H 0.19 4.81 8.06 -2.92 -0.02 4.79 16 29 H 0.08 2.49 7.66 -2.39 -0.02 2.47 16 30 H 0.05 1.45 7.26 -2.39 -0.02 1.43 16 31 H 0.01 0.57 4.69 -2.39 -0.01 0.56 16 32 H 0.00 -0.18 7.46 -2.39 -0.02 -0.20 16 33 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 34 H 0.08 2.27 5.57 -2.39 -0.01 2.26 16 35 H 0.08 3.67 4.29 -2.39 -0.01 3.66 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.04 1.42 7.83 -2.39 -0.02 1.41 16 41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.05 1.94 5.51 -2.39 -0.01 1.93 16 43 H 0.19 3.63 7.82 -2.91 -0.02 3.61 16 Total: -1.00 -63.14 339.07 -0.87 -64.01 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.01 Total: 15.59 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 6.70 Total: -0.06 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -9.68 Total: -115.60 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.92 Total: -9.26 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -63.14 -0.87 -64.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206400442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.291 kcal (2) G-P(sol) polarization free energy of solvation -63.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds