Wall clock time and date at job start Tue Mar 31 2020 07:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35913 * 116.99473 * 2 1 4 4 C 1.38746 * 120.47975 * 0.02562 * 3 2 1 5 5 N 1.31809 * 120.68863 * 179.97438 * 4 3 2 6 6 C 1.31883 * 121.77412 * 359.97438 * 5 4 3 7 7 C 1.38207 * 120.88923 * 0.02562 * 6 5 4 8 8 C 1.38579 * 119.22492 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.81081 * 180.27356 * 8 7 6 10 10 N 1.46900 * 109.47157 * 259.71596 * 9 8 7 11 11 C 1.46961 * 110.99722 * 293.80109 * 10 9 8 12 12 C 1.53052 * 109.36036 * 176.81006 * 11 10 9 13 13 N 1.46953 * 109.36285 * 58.40350 * 12 11 10 14 14 C 1.46900 * 110.99903 * 176.80962 * 13 12 11 15 15 C 1.50703 * 109.47314 * 293.79800 * 14 13 12 16 16 H 1.08004 * 119.99815 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00578 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99822 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00093 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47588 * 59.99963 * 19 17 15 21 21 H 1.48503 * 109.46950 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47233 * 299.99313 * 19 17 15 23 23 C 1.46951 * 110.88023 * 300.67491 * 13 12 11 24 24 C 1.46953 * 110.99903 * 170.00285 * 10 9 8 25 25 H 1.09000 * 109.47004 * 60.01029 * 1 2 3 26 26 H 1.09001 * 109.46483 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47414 * 300.00005 * 1 2 3 28 28 H 1.08003 * 119.65650 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.55106 * 179.97438 * 6 5 4 30 30 H 1.08006 * 120.38718 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.47495 * 19.71833 * 9 8 7 32 32 H 1.09000 * 109.46880 * 139.71582 * 9 8 7 33 33 H 1.08999 * 109.48941 * 296.77480 * 11 10 9 34 34 H 1.08996 * 109.48901 * 56.84225 * 11 10 9 35 35 H 1.08993 * 109.49261 * 298.43232 * 12 11 10 36 36 H 1.09007 * 109.48459 * 178.36908 * 12 11 10 37 37 H 1.08998 * 109.47444 * 53.79613 * 14 13 12 38 38 H 1.08999 * 109.47710 * 173.80039 * 14 13 12 39 39 H 0.97003 * 120.00131 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.49085 * 299.34951 * 23 13 12 41 41 H 1.09010 * 109.48886 * 179.29227 * 23 13 12 42 42 H 1.08998 * 109.48878 * 303.15354 * 24 10 9 43 43 H 1.09001 * 109.49411 * 63.22035 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3809 0.0005 5 7 1.8940 3.5575 0.0010 6 6 3.2078 3.6722 0.0016 7 6 4.0178 2.5524 0.0011 8 6 3.4344 1.2954 -0.0005 9 6 4.2834 0.0503 0.0051 10 7 4.3619 -0.4950 -1.3567 11 6 3.0480 -0.9736 -1.8088 12 6 3.1554 -1.4591 -3.2563 13 7 4.1592 -2.5293 -3.3380 14 6 4.2377 -3.0746 -4.6998 15 6 2.9455 -3.7732 -5.0364 16 1 2.1458 -3.8082 -4.3114 17 6 2.7841 -4.3677 -6.2699 18 7 3.7577 -4.3247 -7.1530 19 14 1.1821 -5.2330 -6.6873 20 1 0.0602 -4.2635 -6.6069 21 1 1.2615 -5.7843 -8.0639 22 1 0.9510 -6.3387 -5.7234 23 6 5.4730 -2.0507 -2.8859 24 6 5.3657 -1.5651 -1.4384 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2213 2.3268 0.0014 29 1 3.6568 4.6545 0.0016 30 1 5.0929 2.6557 0.0019 31 1 5.2857 0.2955 0.3566 32 1 3.8371 -0.6908 0.6681 33 1 2.7220 -1.7964 -1.1725 34 1 2.3249 -0.1601 -1.7508 35 1 3.4551 -0.6298 -3.8968 36 1 2.1887 -1.8415 -3.5843 37 1 4.4067 -2.2627 -5.4072 38 1 5.0614 -3.7859 -4.7595 39 1 3.6441 -4.7426 -8.0210 40 1 5.7991 -1.2280 -3.5223 41 1 6.1962 -2.8643 -2.9439 42 1 6.3323 -1.1828 -1.1105 43 1 5.0660 -2.3946 -0.7979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206473168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:25 Heat of formation + Delta-G solvation = 19.620461 kcal Electronic energy + Delta-G solvation = -23814.764445 eV Core-core repulsion = 20474.752043 eV Total energy + Delta-G solvation = -3340.012402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00108 -38.57476 -38.21031 -35.43452 -33.06198 -32.08288 -30.61506 -30.28776 -28.47260 -27.67140 -26.20627 -24.11588 -23.30794 -22.79544 -21.82280 -21.18600 -19.13010 -18.12626 -17.14186 -16.59431 -16.41822 -16.25564 -15.37289 -14.78241 -14.57598 -14.52785 -14.15348 -14.13659 -14.02379 -13.72085 -13.46932 -13.16682 -12.58108 -12.40986 -12.08670 -12.02664 -11.79291 -11.63902 -11.40834 -11.14592 -10.83708 -10.65590 -10.62635 -10.31929 -10.24290 -9.76878 -9.62083 -9.52490 -9.16286 -8.58404 -8.41746 -8.07175 -7.18379 -6.00719 -4.02041 0.98734 1.11806 3.02489 3.33722 3.37785 3.40444 3.59942 4.24005 4.32505 4.43581 4.47402 4.58840 4.73114 4.95599 5.00935 5.01307 5.17546 5.27564 5.34728 5.34846 5.39494 5.44531 5.58761 5.66189 5.74179 5.82187 5.93029 6.03702 6.09128 6.17729 6.28661 6.38260 6.47513 6.66531 6.75085 7.02931 7.23391 7.26008 7.38702 7.42831 7.80429 7.82192 8.12376 8.24841 8.58770 9.05181 9.61889 11.10224 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.004010 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.057654 B = 6981.359732 C = 7769.941959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.301 6.301 3 C 0.084 3.916 4 C 0.015 3.985 5 N -0.455 5.455 6 C 0.058 3.942 7 C -0.118 4.118 8 C -0.060 4.060 9 C 0.100 3.900 10 N -0.534 5.534 11 C 0.061 3.939 12 C 0.067 3.933 13 N -0.538 5.538 14 C 0.193 3.807 15 C -0.507 4.507 16 H 0.061 0.939 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.057 3.943 24 C 0.062 3.938 25 H 0.059 0.941 26 H 0.105 0.895 27 H 0.055 0.945 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.141 0.859 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.025 0.975 36 H 0.084 0.916 37 H -0.009 1.009 38 H 0.029 0.971 39 H 0.261 0.739 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 12.448 16.974 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.212 6.212 3 C 0.036 3.964 4 C -0.143 4.143 5 N -0.165 5.165 6 C -0.100 4.100 7 C -0.139 4.139 8 C -0.069 4.069 9 C -0.028 4.028 10 N -0.259 5.259 11 C -0.067 4.067 12 C -0.061 4.061 13 N -0.263 5.263 14 C 0.068 3.932 15 C -0.545 4.545 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.072 4.072 24 C -0.066 4.066 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.073 0.927 28 H 0.173 0.827 29 H 0.174 0.826 30 H 0.159 0.841 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.043 0.957 36 H 0.102 0.898 37 H 0.009 0.991 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.940 12.896 16.775 21.247 hybrid contribution -0.539 -1.113 -0.441 1.313 sum -2.479 11.783 16.334 20.292 Atomic orbital electron populations 1.23141 0.78199 1.04678 1.01375 1.86300 1.21509 1.25576 1.87864 1.19914 0.92767 0.86017 0.97726 1.22852 1.00422 0.87168 1.03809 1.67488 1.12370 1.26530 1.10074 1.22603 0.88898 0.98919 0.99573 1.21930 1.01621 0.91538 0.98778 1.19675 0.90606 0.96247 1.00384 1.20854 0.98293 0.92549 0.91092 1.62267 1.08466 1.34328 1.20867 1.22435 0.89298 0.98466 0.96479 1.22017 0.97918 0.92465 0.93741 1.62283 1.04255 1.31024 1.28749 1.19695 0.97965 0.93934 0.81569 1.21117 1.00108 1.34218 0.99095 0.92034 1.24983 0.96802 0.96496 0.96297 1.69950 1.32147 1.45049 1.06709 0.86571 0.83669 0.79914 0.77304 1.20320 1.21353 1.20192 1.22052 0.93292 0.98026 0.93828 1.22162 0.94584 0.92028 0.97852 0.92200 0.87681 0.92658 0.82671 0.82641 0.84116 0.89936 0.93313 0.94038 0.90517 0.95711 0.89823 0.99142 0.95261 0.92893 0.95212 0.91008 0.91225 0.94241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.82 101.05 0.99 1.17 16 2 O -0.30 -3.60 6.84 -19.47 -0.13 -3.73 16 3 C 0.08 1.03 5.47 -39.08 -0.21 0.81 16 4 C 0.02 0.18 10.22 -17.37 -0.18 0.00 16 5 N -0.45 -5.63 10.36 -13.13 -0.14 -5.77 16 6 C 0.06 0.61 11.18 -17.54 -0.20 0.41 16 7 C -0.12 -1.24 9.77 -39.47 -0.39 -1.63 16 8 C -0.06 -0.73 5.19 -104.18 -0.54 -1.27 16 9 C 0.10 1.24 5.03 -4.98 -0.03 1.22 16 10 N -0.53 -8.21 4.70 -235.91 -1.11 -9.32 16 11 C 0.06 1.03 4.19 -3.76 -0.02 1.02 16 12 C 0.07 1.39 5.43 -3.77 -0.02 1.37 16 13 N -0.54 -12.01 4.70 -235.91 -1.11 -13.12 16 14 C 0.19 5.16 4.72 -4.97 -0.02 5.14 16 15 C -0.51 -14.40 8.47 -34.44 -0.29 -14.69 16 16 H 0.06 1.72 7.13 -52.48 -0.37 1.35 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 19 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 24 C 0.06 0.95 5.61 -3.77 -0.02 0.93 16 25 H 0.06 0.46 7.68 -51.93 -0.40 0.06 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.36 7.68 -51.93 -0.40 -0.04 16 28 H 0.16 1.43 6.32 -52.48 -0.33 1.10 16 29 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 31 H 0.08 0.86 7.93 -51.93 -0.41 0.44 16 32 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 33 H 0.04 0.74 7.95 -51.93 -0.41 0.33 16 34 H 0.08 1.25 4.69 -51.93 -0.24 1.01 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 1.84 6.79 -51.92 -0.35 1.48 16 37 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 38 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.30 8.07 -51.92 -0.42 0.88 16 42 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 340.25 15.07 5.13 5.13 Total: -1.00 -32.43 340.25 -9.36 -41.80 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -6.68 Total: -2.45 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.04 Total: -2.99 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -1.62 Total: -54.47 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.13 Total: -3.73 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.43 -9.36 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206473168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.416 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds