Wall clock time and date at job start Tue Mar 31 2020 07:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35913 * 116.99473 * 2 1 4 4 C 1.38746 * 120.47975 * 0.02562 * 3 2 1 5 5 N 1.31809 * 120.68863 * 179.97438 * 4 3 2 6 6 C 1.31883 * 121.77412 * 359.97438 * 5 4 3 7 7 C 1.38207 * 120.88923 * 0.02562 * 6 5 4 8 8 C 1.38579 * 119.22492 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.81081 * 180.27356 * 8 7 6 10 10 N 1.46900 * 109.47157 * 259.71596 * 9 8 7 11 11 C 1.46961 * 110.99722 * 293.80109 * 10 9 8 12 12 C 1.53052 * 109.36036 * 176.81006 * 11 10 9 13 13 N 1.46953 * 109.36285 * 58.40350 * 12 11 10 14 14 C 1.46900 * 110.99903 * 176.80962 * 13 12 11 15 15 C 1.50703 * 109.47314 * 293.79800 * 14 13 12 16 16 H 1.08004 * 119.99815 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00578 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99822 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00093 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47588 * 59.99963 * 19 17 15 21 21 H 1.48503 * 109.46950 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47233 * 299.99313 * 19 17 15 23 23 C 1.46951 * 110.88023 * 300.67491 * 13 12 11 24 24 C 1.46953 * 110.99903 * 170.00285 * 10 9 8 25 25 H 1.09000 * 109.47004 * 60.01029 * 1 2 3 26 26 H 1.09001 * 109.46483 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47414 * 300.00005 * 1 2 3 28 28 H 1.08003 * 119.65650 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.55106 * 179.97438 * 6 5 4 30 30 H 1.08006 * 120.38718 * 180.02562 * 7 6 5 31 31 H 1.09004 * 109.47495 * 19.71833 * 9 8 7 32 32 H 1.09000 * 109.46880 * 139.71582 * 9 8 7 33 33 H 1.08999 * 109.48941 * 296.77480 * 11 10 9 34 34 H 1.08996 * 109.48901 * 56.84225 * 11 10 9 35 35 H 1.08993 * 109.49261 * 298.43232 * 12 11 10 36 36 H 1.09007 * 109.48459 * 178.36908 * 12 11 10 37 37 H 1.08998 * 109.47444 * 53.79613 * 14 13 12 38 38 H 1.08999 * 109.47710 * 173.80039 * 14 13 12 39 39 H 0.97003 * 120.00131 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.49085 * 299.34951 * 23 13 12 41 41 H 1.09010 * 109.48886 * 179.29227 * 23 13 12 42 42 H 1.08998 * 109.48878 * 303.15354 * 24 10 9 43 43 H 1.09001 * 109.49411 * 63.22035 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3809 0.0005 5 7 1.8940 3.5575 0.0010 6 6 3.2078 3.6722 0.0016 7 6 4.0178 2.5524 0.0011 8 6 3.4344 1.2954 -0.0005 9 6 4.2834 0.0503 0.0051 10 7 4.3619 -0.4950 -1.3567 11 6 3.0480 -0.9736 -1.8088 12 6 3.1554 -1.4591 -3.2563 13 7 4.1592 -2.5293 -3.3380 14 6 4.2377 -3.0746 -4.6998 15 6 2.9455 -3.7732 -5.0364 16 1 2.1458 -3.8082 -4.3114 17 6 2.7841 -4.3677 -6.2699 18 7 3.7577 -4.3247 -7.1530 19 14 1.1821 -5.2330 -6.6873 20 1 0.0602 -4.2635 -6.6069 21 1 1.2615 -5.7843 -8.0639 22 1 0.9510 -6.3387 -5.7234 23 6 5.4730 -2.0507 -2.8859 24 6 5.3657 -1.5651 -1.4384 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2213 2.3268 0.0014 29 1 3.6568 4.6545 0.0016 30 1 5.0929 2.6557 0.0019 31 1 5.2857 0.2955 0.3566 32 1 3.8371 -0.6908 0.6681 33 1 2.7220 -1.7964 -1.1725 34 1 2.3249 -0.1601 -1.7508 35 1 3.4551 -0.6298 -3.8968 36 1 2.1887 -1.8415 -3.5843 37 1 4.4067 -2.2627 -5.4072 38 1 5.0614 -3.7859 -4.7595 39 1 3.6441 -4.7426 -8.0210 40 1 5.7991 -1.2280 -3.5223 41 1 6.1962 -2.8643 -2.9439 42 1 6.3323 -1.1828 -1.1105 43 1 5.0660 -2.3946 -0.7979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206473168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:24 Heat of formation + Delta-G solvation = -4.077116 kcal Electronic energy + Delta-G solvation = -23815.792049 eV Core-core repulsion = 20474.752043 eV Total energy + Delta-G solvation = -3341.040007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.85757 -39.99208 -39.02551 -36.92126 -34.80358 -33.52999 -31.84655 -31.34211 -30.07821 -28.41219 -27.78423 -25.61615 -24.62800 -23.73088 -23.38875 -22.49735 -20.63927 -18.93541 -18.49713 -18.01948 -17.65327 -17.23781 -16.75612 -16.29093 -15.90643 -15.82724 -15.39896 -15.29214 -15.10872 -15.03283 -14.85322 -14.40401 -14.07330 -13.61815 -13.46644 -13.25200 -13.00849 -12.75765 -12.71493 -12.65013 -12.42605 -12.31178 -12.23285 -12.04566 -11.87398 -11.44480 -11.20878 -10.62321 -10.48501 -10.44110 -9.45144 -9.27963 -9.03874 -8.21518 -6.32268 0.16942 0.26573 1.39791 1.43431 1.51396 2.27136 2.39396 2.71324 3.10313 3.13669 3.30041 3.55655 3.61346 3.77231 3.95174 4.00994 4.22898 4.29062 4.32549 4.36266 4.38601 4.40006 4.51479 4.59754 4.66164 4.68480 4.73787 4.80164 4.89896 4.92630 4.98668 5.02893 5.06990 5.20684 5.26035 5.28650 5.61322 5.62516 5.99233 6.04896 6.07433 6.25646 6.33425 6.61734 6.82941 6.98871 7.37449 8.89694 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.004010 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.057654 B = 6981.359732 C = 7769.941959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.320 6.320 3 C 0.073 3.927 4 C 0.006 3.994 5 N -0.477 5.477 6 C 0.051 3.949 7 C -0.113 4.113 8 C -0.081 4.081 9 C 0.105 3.895 10 N -0.542 5.542 11 C 0.081 3.919 12 C 0.071 3.929 13 N -0.543 5.543 14 C 0.209 3.791 15 C -0.525 4.525 16 H 0.062 0.938 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.971 3.029 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.267 1.267 23 C 0.053 3.947 24 C 0.071 3.929 25 H 0.062 0.938 26 H 0.113 0.887 27 H 0.074 0.926 28 H 0.172 0.828 29 H 0.183 0.817 30 H 0.167 0.833 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.086 0.914 35 H 0.007 0.993 36 H 0.064 0.936 37 H -0.043 1.043 38 H 0.005 0.995 39 H 0.265 0.735 40 H 0.020 0.980 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.968 13.119 18.591 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.025 3.975 4 C -0.151 4.151 5 N -0.187 5.187 6 C -0.106 4.106 7 C -0.133 4.133 8 C -0.090 4.090 9 C -0.021 4.021 10 N -0.267 5.267 11 C -0.047 4.047 12 C -0.058 4.058 13 N -0.268 5.268 14 C 0.082 3.918 15 C -0.563 4.563 16 H 0.080 0.920 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.795 3.205 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.192 1.192 23 C -0.075 4.075 24 C -0.057 4.057 25 H 0.081 0.919 26 H 0.131 0.869 27 H 0.092 0.908 28 H 0.189 0.811 29 H 0.200 0.800 30 H 0.185 0.815 31 H 0.128 0.872 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.104 0.896 35 H 0.026 0.974 36 H 0.082 0.918 37 H -0.025 1.025 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.092 0.908 42 H 0.124 0.876 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.356 13.582 18.425 23.011 hybrid contribution -0.368 -1.258 -0.926 1.605 sum -2.723 12.324 17.499 21.576 Atomic orbital electron populations 1.23357 0.76641 1.05602 1.02461 1.86246 1.23260 1.25776 1.87920 1.20081 0.93148 0.86278 0.98037 1.23114 1.01318 0.86915 1.03746 1.67525 1.13464 1.26941 1.10757 1.23105 0.88493 1.00317 0.98682 1.22231 1.02986 0.90728 0.97392 1.19862 0.90758 0.96813 1.01553 1.20887 0.99971 0.92381 0.88901 1.62236 1.07248 1.33972 1.23274 1.22155 0.90785 0.98346 0.93383 1.21980 0.96329 0.91186 0.96274 1.62230 1.06614 1.32286 1.25671 1.19355 0.96668 0.92351 0.83406 1.21406 1.00673 1.34669 0.99579 0.92018 1.25933 1.00634 0.97048 0.95984 1.70085 1.34414 1.45844 1.07184 0.85420 0.78992 0.78864 0.77255 1.19207 1.20723 1.19171 1.22187 0.91377 0.97839 0.96134 1.22110 0.96434 0.92282 0.94840 0.91888 0.86899 0.90793 0.81126 0.80027 0.81505 0.87178 0.93686 0.94737 0.89629 0.97443 0.91796 1.02511 0.97646 0.92628 0.96170 0.90759 0.87572 0.94305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.82 113.37 1.11 1.32 16 2 O -0.32 -7.32 6.84 -92.57 -0.63 -7.95 16 3 C 0.07 1.68 5.47 22.60 0.12 1.80 16 4 C 0.01 0.14 10.22 84.82 0.87 1.01 16 5 N -0.48 -11.04 10.36 -195.44 -2.02 -13.07 16 6 C 0.05 0.97 11.18 84.68 0.95 1.91 16 7 C -0.11 -2.06 9.77 22.34 0.22 -1.85 16 8 C -0.08 -1.80 5.19 -19.58 -0.10 -1.90 16 9 C 0.11 2.34 5.03 85.56 0.43 2.77 16 10 N -0.54 -15.71 4.70 -900.28 -4.23 -19.94 16 11 C 0.08 2.72 4.19 86.31 0.36 3.08 16 12 C 0.07 3.01 5.43 86.31 0.47 3.48 16 13 N -0.54 -24.89 4.70 -900.28 -4.23 -29.12 16 14 C 0.21 11.64 4.72 85.56 0.40 12.04 16 15 C -0.53 -30.61 8.47 25.60 0.22 -30.39 16 16 H 0.06 3.52 7.13 -2.91 -0.02 3.50 16 17 C 0.00 0.12 5.46 84.65 0.46 0.58 16 18 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 19 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 23 C 0.05 2.00 5.61 86.31 0.48 2.48 16 24 C 0.07 2.04 5.61 86.31 0.48 2.52 16 25 H 0.06 0.92 7.68 -2.39 -0.02 0.90 16 26 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 27 H 0.07 0.85 7.68 -2.39 -0.02 0.83 16 28 H 0.17 2.93 6.32 -2.91 -0.02 2.91 16 29 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 30 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.11 1.84 7.93 -2.38 -0.02 1.82 16 32 H 0.04 1.06 7.91 -2.39 -0.02 1.04 16 33 H 0.03 1.21 7.95 -2.39 -0.02 1.19 16 34 H 0.09 2.75 4.69 -2.39 -0.01 2.74 16 35 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.06 2.91 6.79 -2.38 -0.02 2.89 16 37 H -0.04 -2.62 8.12 -2.39 -0.02 -2.64 16 38 H 0.01 0.32 8.03 -2.39 -0.02 0.30 16 39 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 2.71 8.07 -2.38 -0.02 2.69 16 42 H 0.11 2.33 8.07 -2.39 -0.02 2.31 16 43 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -71.40 340.25 -1.34 -72.74 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.99 Total: 8.77 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 6.48 Total: -1.13 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -10.20 Total: -119.20 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.63 Total: -7.95 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -71.40 -1.34 -72.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206473168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.664 kcal (2) G-P(sol) polarization free energy of solvation -71.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds