Wall clock time and date at job start Tue Mar 31 2020 07:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35910 * 116.99803 * 2 1 4 4 C 1.39138 * 120.47706 * 0.24626 * 3 2 1 5 5 C 1.38535 * 118.37336 * 180.24194 * 4 3 2 6 6 C 1.38262 * 119.22035 * 359.47237 * 5 4 3 7 7 N 1.31844 * 120.88422 * 0.30388 * 6 5 4 8 8 C 1.31834 * 121.78446 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.66143 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47313 * 89.99746 * 9 8 7 11 11 C 1.46966 * 111.00167 * 293.80637 * 10 9 8 12 12 C 1.53044 * 109.36130 * 176.81043 * 11 10 9 13 13 N 1.46953 * 109.36841 * 58.39996 * 12 11 10 14 14 C 1.46904 * 110.99720 * 176.80724 * 13 12 11 15 15 C 1.50694 * 109.47276 * 293.79710 * 14 13 12 16 16 H 1.07996 * 120.00502 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00011 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99816 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99980 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47341 * 90.00233 * 19 17 15 21 21 H 1.48505 * 109.46733 * 209.99635 * 19 17 15 22 22 H 1.48488 * 109.47128 * 329.99669 * 19 17 15 23 23 C 1.46950 * 110.87881 * 300.67662 * 13 12 11 24 24 C 1.46953 * 111.00214 * 170.00327 * 10 9 8 25 25 H 1.08991 * 109.47254 * 179.97438 * 1 2 3 26 26 H 1.09011 * 109.46731 * 299.99798 * 1 2 3 27 27 H 1.08998 * 109.47207 * 59.99135 * 1 2 3 28 28 H 1.07999 * 120.81005 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.39207 * 179.75678 * 5 4 3 30 30 H 1.08000 * 119.55595 * 180.28266 * 6 5 4 31 31 H 1.08996 * 109.47636 * 210.00338 * 9 8 7 32 32 H 1.09002 * 109.46796 * 329.99937 * 9 8 7 33 33 H 1.09001 * 109.48253 * 296.77559 * 11 10 9 34 34 H 1.09000 * 109.48960 * 56.83882 * 11 10 9 35 35 H 1.09005 * 109.49197 * 298.42666 * 12 11 10 36 36 H 1.09000 * 109.50227 * 178.37745 * 12 11 10 37 37 H 1.08995 * 109.47387 * 53.80259 * 14 13 12 38 38 H 1.09005 * 109.46560 * 173.79788 * 14 13 12 39 39 H 0.97000 * 119.99978 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.49060 * 299.34750 * 23 13 12 41 41 H 1.09001 * 109.49184 * 179.29183 * 23 13 12 42 42 H 1.08998 * 109.49104 * 303.15452 * 24 10 9 43 43 H 1.09000 * 109.49142 * 63.22412 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2980 2.3841 0.0052 5 6 1.9717 3.5946 -0.0002 6 6 3.3543 3.5975 0.0007 7 7 4.0335 2.4674 0.0005 8 6 3.4306 1.2950 0.0001 9 6 4.2542 0.0329 -0.0006 10 7 4.5221 -0.3778 1.3841 11 6 5.3840 0.5981 2.0656 12 6 5.5736 0.1761 3.5244 13 7 6.1662 -1.1679 3.5698 14 6 6.4340 -1.5785 4.9547 15 6 7.5065 -0.6974 5.5415 16 1 7.9450 0.0893 4.9456 17 6 7.9279 -0.8955 6.8392 18 7 7.3935 -1.8533 7.5652 19 14 9.2568 0.1972 7.5669 20 1 8.6284 1.3768 8.2140 21 1 10.0291 -0.5690 8.5777 22 1 10.1693 0.6523 6.4875 23 6 5.3043 -2.1437 2.8884 24 6 5.1147 -1.7217 1.4295 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 0.2185 2.3518 0.0096 29 1 1.4234 4.5251 -0.0004 30 1 3.8851 4.5381 0.0012 31 1 3.7075 -0.7575 -0.5148 32 1 5.1980 0.2154 -0.5146 33 1 6.3536 0.6360 1.5690 34 1 4.9179 1.5828 2.0294 35 1 4.6070 0.1645 4.0282 36 1 6.2359 0.8827 4.0245 37 1 5.5225 -1.4834 5.5446 38 1 6.7686 -2.6159 4.9677 39 1 7.6897 -1.9924 8.4783 40 1 4.3347 -2.1817 3.3850 41 1 5.7704 -3.1284 2.9246 42 1 4.4522 -2.4284 0.9298 43 1 6.0813 -1.7102 0.9258 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206644540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:52 Heat of formation + Delta-G solvation = 18.301446 kcal Electronic energy + Delta-G solvation = -23487.773283 eV Core-core repulsion = 20147.703683 eV Total energy + Delta-G solvation = -3340.069599 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88495 -38.59567 -38.16294 -35.17695 -32.78319 -32.11624 -31.11412 -30.26490 -28.32986 -27.65208 -26.14122 -24.05040 -23.17631 -22.79174 -21.80901 -21.15773 -19.03805 -18.23825 -17.21674 -16.37280 -16.26051 -16.17740 -15.57343 -14.69460 -14.57198 -14.43032 -14.30393 -14.07789 -13.84199 -13.67335 -13.37111 -13.02673 -12.92997 -12.33736 -11.99442 -11.81955 -11.67426 -11.63644 -11.43145 -11.09443 -10.76732 -10.61009 -10.57563 -10.31316 -10.19867 -9.86537 -9.73376 -9.55651 -9.10218 -8.48605 -8.37948 -7.97975 -7.12522 -5.96886 -3.97786 0.95828 1.13261 3.01172 3.35916 3.41700 3.46822 3.56224 4.15919 4.42940 4.47636 4.48927 4.55336 4.78058 4.87690 4.94284 5.07037 5.10172 5.22317 5.31756 5.38779 5.41009 5.55122 5.71157 5.76451 5.85204 5.89572 5.98634 5.99832 6.08870 6.22204 6.30319 6.34910 6.54276 6.72197 6.81281 7.03638 7.29802 7.35216 7.43763 7.49460 7.87443 7.90530 8.17115 8.30089 8.63944 9.10149 9.66165 11.14088 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021685 B = 0.003595 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.916864 B = 7786.545362 C = 8374.390630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.298 6.298 3 C 0.098 3.902 4 C -0.170 4.170 5 C -0.136 4.136 6 C 0.059 3.941 7 N -0.441 5.441 8 C 0.118 3.882 9 C 0.112 3.888 10 N -0.531 5.531 11 C 0.061 3.939 12 C 0.069 3.931 13 N -0.538 5.538 14 C 0.193 3.807 15 C -0.505 4.505 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.900 5.900 19 Si 0.897 3.103 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.058 3.942 24 C 0.064 3.936 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.025 0.975 36 H 0.084 0.916 37 H -0.010 1.010 38 H 0.029 0.971 39 H 0.260 0.740 40 H 0.029 0.971 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.015 7.000 -18.164 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.209 6.209 3 C 0.049 3.951 4 C -0.197 4.197 5 C -0.156 4.156 6 C -0.098 4.098 7 N -0.151 5.151 8 C -0.023 4.023 9 C -0.017 4.017 10 N -0.257 5.257 11 C -0.067 4.067 12 C -0.060 4.060 13 N -0.263 5.263 14 C 0.068 3.932 15 C -0.544 4.544 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.725 3.275 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.071 4.071 24 C -0.064 4.064 25 H 0.121 0.879 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.155 0.845 29 H 0.153 0.847 30 H 0.174 0.826 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.103 0.897 37 H 0.008 0.992 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.010 6.721 -17.977 23.762 hybrid contribution -0.657 0.791 0.617 1.199 sum -14.667 7.512 -17.360 23.936 Atomic orbital electron populations 1.23096 0.78572 1.04261 1.01057 1.86183 1.21041 1.25682 1.88001 1.19863 0.93124 0.85074 0.97029 1.21673 1.00650 0.92246 1.05092 1.21954 0.95781 0.98133 0.99779 1.22627 0.91412 0.96439 0.99298 1.67576 1.40055 0.97574 1.09894 1.20620 0.88241 0.93952 0.99462 1.20771 0.97643 0.92125 0.91118 1.62152 1.47266 1.02977 1.13292 1.22251 0.94579 0.94786 0.95060 1.21985 0.97494 0.92743 0.93754 1.62277 1.42977 1.00794 1.20283 1.19696 0.95456 0.96725 0.81297 1.21176 1.20083 1.16159 0.96961 0.91914 1.24989 0.96944 0.95625 0.97079 1.69966 1.43058 1.31627 1.09301 0.86513 0.81816 0.80333 0.78862 1.20779 1.21297 1.19757 1.22049 0.95668 0.96484 0.92932 1.22142 0.97287 0.89294 0.97701 0.87947 0.92602 0.92912 0.84511 0.84718 0.82560 0.89232 0.93125 0.94208 0.90983 0.95705 0.89737 0.99170 0.95245 0.93003 0.95248 0.91022 0.91117 0.94217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.83 101.05 0.99 1.18 16 2 O -0.30 -3.45 9.55 -19.46 -0.19 -3.64 16 3 C 0.10 1.20 6.67 -39.07 -0.26 0.94 16 4 C -0.17 -1.67 9.14 -39.14 -0.36 -2.03 16 5 C -0.14 -1.25 10.11 -39.46 -0.40 -1.65 16 6 C 0.06 0.64 11.18 -17.54 -0.20 0.45 16 7 N -0.44 -6.11 9.13 -9.35 -0.09 -6.19 16 8 C 0.12 1.63 5.57 -82.42 -0.46 1.18 16 9 C 0.11 1.58 5.03 -4.98 -0.03 1.56 16 10 N -0.53 -8.81 4.70 -235.91 -1.11 -9.92 16 11 C 0.06 1.12 5.38 -3.77 -0.02 1.10 16 12 C 0.07 1.48 5.43 -3.77 -0.02 1.46 16 13 N -0.54 -12.36 4.70 -235.92 -1.11 -13.47 16 14 C 0.19 5.26 4.72 -4.98 -0.02 5.23 16 15 C -0.51 -14.63 8.47 -34.44 -0.29 -14.92 16 16 H 0.06 1.80 7.13 -52.49 -0.37 1.43 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 19 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.06 1.12 5.61 -3.77 -0.02 1.10 16 24 C 0.06 1.03 5.61 -3.77 -0.02 1.01 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.37 7.69 -51.92 -0.40 -0.03 16 27 H 0.05 0.29 7.71 -51.93 -0.40 -0.11 16 28 H 0.14 0.97 6.45 -52.49 -0.34 0.63 16 29 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 30 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.09 1.15 7.41 -51.93 -0.38 0.77 16 32 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.29 6.40 -51.93 -0.33 0.96 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 1.92 6.79 -51.93 -0.35 1.57 16 37 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 38 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 42 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -33.05 345.54 -9.54 -42.59 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.77 Total: -3.15 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.20 Total: -1.92 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -1.57 Total: -56.19 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.19 Total: -3.64 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.05 -9.54 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206644540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.890 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds