Wall clock time and date at job start Tue Mar 31 2020 07:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35910 * 116.99803 * 2 1 4 4 C 1.39138 * 120.47706 * 0.24626 * 3 2 1 5 5 C 1.38535 * 118.37336 * 180.24194 * 4 3 2 6 6 C 1.38262 * 119.22035 * 359.47237 * 5 4 3 7 7 N 1.31844 * 120.88422 * 0.30388 * 6 5 4 8 8 C 1.31834 * 121.78446 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.66143 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47313 * 89.99746 * 9 8 7 11 11 C 1.46966 * 111.00167 * 293.80637 * 10 9 8 12 12 C 1.53044 * 109.36130 * 176.81043 * 11 10 9 13 13 N 1.46953 * 109.36841 * 58.39996 * 12 11 10 14 14 C 1.46904 * 110.99720 * 176.80724 * 13 12 11 15 15 C 1.50694 * 109.47276 * 293.79710 * 14 13 12 16 16 H 1.07996 * 120.00502 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00011 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99816 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99980 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47341 * 90.00233 * 19 17 15 21 21 H 1.48505 * 109.46733 * 209.99635 * 19 17 15 22 22 H 1.48488 * 109.47128 * 329.99669 * 19 17 15 23 23 C 1.46950 * 110.87881 * 300.67662 * 13 12 11 24 24 C 1.46953 * 111.00214 * 170.00327 * 10 9 8 25 25 H 1.08991 * 109.47254 * 179.97438 * 1 2 3 26 26 H 1.09011 * 109.46731 * 299.99798 * 1 2 3 27 27 H 1.08998 * 109.47207 * 59.99135 * 1 2 3 28 28 H 1.07999 * 120.81005 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.39207 * 179.75678 * 5 4 3 30 30 H 1.08000 * 119.55595 * 180.28266 * 6 5 4 31 31 H 1.08996 * 109.47636 * 210.00338 * 9 8 7 32 32 H 1.09002 * 109.46796 * 329.99937 * 9 8 7 33 33 H 1.09001 * 109.48253 * 296.77559 * 11 10 9 34 34 H 1.09000 * 109.48960 * 56.83882 * 11 10 9 35 35 H 1.09005 * 109.49197 * 298.42666 * 12 11 10 36 36 H 1.09000 * 109.50227 * 178.37745 * 12 11 10 37 37 H 1.08995 * 109.47387 * 53.80259 * 14 13 12 38 38 H 1.09005 * 109.46560 * 173.79788 * 14 13 12 39 39 H 0.97000 * 119.99978 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.49060 * 299.34750 * 23 13 12 41 41 H 1.09001 * 109.49184 * 179.29183 * 23 13 12 42 42 H 1.08998 * 109.49104 * 303.15452 * 24 10 9 43 43 H 1.09000 * 109.49142 * 63.22412 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2980 2.3841 0.0052 5 6 1.9717 3.5946 -0.0002 6 6 3.3543 3.5975 0.0007 7 7 4.0335 2.4674 0.0005 8 6 3.4306 1.2950 0.0001 9 6 4.2542 0.0329 -0.0006 10 7 4.5221 -0.3778 1.3841 11 6 5.3840 0.5981 2.0656 12 6 5.5736 0.1761 3.5244 13 7 6.1662 -1.1679 3.5698 14 6 6.4340 -1.5785 4.9547 15 6 7.5065 -0.6974 5.5415 16 1 7.9450 0.0893 4.9456 17 6 7.9279 -0.8955 6.8392 18 7 7.3935 -1.8533 7.5652 19 14 9.2568 0.1972 7.5669 20 1 8.6284 1.3768 8.2140 21 1 10.0291 -0.5690 8.5777 22 1 10.1693 0.6523 6.4875 23 6 5.3043 -2.1437 2.8884 24 6 5.1147 -1.7217 1.4295 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 0.2185 2.3518 0.0096 29 1 1.4234 4.5251 -0.0004 30 1 3.8851 4.5381 0.0012 31 1 3.7075 -0.7575 -0.5148 32 1 5.1980 0.2154 -0.5146 33 1 6.3536 0.6360 1.5690 34 1 4.9179 1.5828 2.0294 35 1 4.6070 0.1645 4.0282 36 1 6.2359 0.8827 4.0245 37 1 5.5225 -1.4834 5.5446 38 1 6.7686 -2.6159 4.9677 39 1 7.6897 -1.9924 8.4783 40 1 4.3347 -2.1817 3.3850 41 1 5.7704 -3.1284 2.9246 42 1 4.4522 -2.4284 0.9298 43 1 6.0813 -1.7102 0.9258 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206644540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:52 Heat of formation + Delta-G solvation = -6.047655 kcal Electronic energy + Delta-G solvation = -23488.829139 eV Core-core repulsion = 20147.703683 eV Total energy + Delta-G solvation = -3341.125456 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.71811 -40.04427 -39.01352 -36.77905 -34.68118 -33.26118 -32.08767 -31.82424 -29.95337 -28.29430 -27.74761 -25.60297 -24.55501 -23.73517 -23.37394 -22.54956 -20.63731 -18.98121 -18.49708 -18.03620 -17.46000 -17.15082 -16.73274 -16.34361 -15.90492 -15.83727 -15.51277 -15.28056 -15.17692 -15.04826 -14.59005 -14.23326 -14.09321 -13.87464 -13.49298 -13.11824 -13.05210 -12.87960 -12.68407 -12.44553 -12.31708 -12.28095 -12.19805 -12.11702 -11.90071 -11.52292 -11.19536 -10.66534 -10.62252 -10.50141 -9.40049 -9.23945 -9.03897 -8.21305 -6.31789 0.14205 0.34057 1.40178 1.41983 1.54004 2.32097 2.40017 2.63988 3.10439 3.14534 3.28817 3.43737 3.66225 3.86285 4.00033 4.09436 4.19585 4.22385 4.35760 4.38161 4.39554 4.41070 4.47731 4.56377 4.61493 4.66679 4.74818 4.83926 4.87916 4.95823 5.01150 5.03228 5.11557 5.17193 5.19935 5.26748 5.55048 5.63167 5.98758 6.04173 6.06870 6.30951 6.34163 6.61584 6.83590 7.06427 7.37851 8.90116 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021685 B = 0.003595 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.916864 B = 7786.545362 C = 8374.390630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.319 6.319 3 C 0.087 3.913 4 C -0.170 4.170 5 C -0.125 4.125 6 C 0.044 3.956 7 N -0.471 5.471 8 C 0.083 3.917 9 C 0.119 3.881 10 N -0.538 5.538 11 C 0.081 3.919 12 C 0.074 3.926 13 N -0.543 5.543 14 C 0.209 3.791 15 C -0.525 4.525 16 H 0.061 0.939 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.265 1.265 23 C 0.056 3.944 24 C 0.072 3.928 25 H 0.116 0.884 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.166 0.834 29 H 0.172 0.828 30 H 0.178 0.822 31 H 0.102 0.898 32 H 0.046 0.954 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.010 0.990 36 H 0.066 0.934 37 H -0.042 1.042 38 H 0.007 0.993 39 H 0.265 0.735 40 H 0.020 0.980 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.031 8.548 -19.421 26.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.231 6.231 3 C 0.039 3.961 4 C -0.196 4.196 5 C -0.144 4.144 6 C -0.113 4.113 7 N -0.182 5.182 8 C -0.056 4.056 9 C -0.009 4.009 10 N -0.263 5.263 11 C -0.047 4.047 12 C -0.054 4.054 13 N -0.268 5.268 14 C 0.083 3.917 15 C -0.563 4.563 16 H 0.079 0.921 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.795 3.205 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.189 1.189 23 C -0.073 4.073 24 C -0.055 4.055 25 H 0.134 0.866 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.184 0.816 29 H 0.189 0.811 30 H 0.195 0.805 31 H 0.120 0.880 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.028 0.972 36 H 0.084 0.916 37 H -0.024 1.024 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.045 8.259 -19.266 25.802 hybrid contribution -0.474 0.321 0.971 1.127 sum -15.519 8.580 -18.295 25.479 Atomic orbital electron populations 1.23372 0.76491 1.05657 1.02212 1.86139 1.23268 1.25741 1.87991 1.19963 0.92907 0.86171 0.97087 1.22069 1.02118 0.91581 1.03862 1.22369 0.95250 0.99455 0.97361 1.23118 0.92672 0.96397 0.99101 1.67495 1.41381 0.98380 1.10895 1.20543 0.89164 0.93756 1.02126 1.20730 0.97770 0.93245 0.89140 1.62124 1.46412 1.02560 1.15245 1.21950 0.94669 0.95431 0.92686 1.21917 0.95939 0.91587 0.95992 1.62222 1.44672 1.02232 1.17716 1.19359 0.93696 0.95341 0.83340 1.21442 1.20716 1.16523 0.97650 0.92109 1.25930 0.99294 0.96997 0.97358 1.70092 1.44456 1.33153 1.09790 0.85361 0.78650 0.78393 0.78096 1.19763 1.20457 1.18929 1.22164 0.94449 0.96017 0.94647 1.22094 0.98250 0.89977 0.95217 0.86610 0.92104 0.90959 0.81610 0.81085 0.80507 0.87967 0.93598 0.94921 0.90521 0.97196 0.91606 1.02385 0.97486 0.92609 0.96178 0.90529 0.87947 0.94140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.83 113.37 1.11 1.32 16 2 O -0.32 -6.89 9.55 -92.53 -0.88 -7.78 16 3 C 0.09 2.02 6.67 22.60 0.15 2.17 16 4 C -0.17 -2.87 9.14 22.56 0.21 -2.66 16 5 C -0.12 -1.90 10.11 22.35 0.23 -1.68 16 6 C 0.04 0.89 11.18 84.70 0.95 1.83 16 7 N -0.47 -12.70 9.13 -183.50 -1.68 -14.37 16 8 C 0.08 2.25 5.57 42.67 0.24 2.49 16 9 C 0.12 3.29 5.03 85.56 0.43 3.72 16 10 N -0.54 -17.63 4.70 -900.29 -4.23 -21.86 16 11 C 0.08 2.99 5.38 86.31 0.46 3.45 16 12 C 0.07 3.30 5.43 86.31 0.47 3.77 16 13 N -0.54 -25.81 4.70 -900.31 -4.23 -30.04 16 14 C 0.21 11.88 4.72 85.55 0.40 12.29 16 15 C -0.53 -31.24 8.47 25.60 0.22 -31.02 16 16 H 0.06 3.57 7.13 -2.91 -0.02 3.55 16 17 C 0.00 0.13 5.46 84.65 0.46 0.59 16 18 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 19 Si 0.97 45.65 29.54 68.60 2.03 47.67 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 23 C 0.06 2.20 5.61 86.31 0.48 2.68 16 24 C 0.07 2.29 5.61 86.31 0.48 2.78 16 25 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 0.66 7.69 -2.38 -0.02 0.64 16 27 H 0.07 0.57 7.71 -2.39 -0.02 0.55 16 28 H 0.17 1.70 6.45 -2.91 -0.02 1.68 16 29 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 30 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.10 2.50 7.41 -2.39 -0.02 2.49 16 32 H 0.05 1.29 8.12 -2.39 -0.02 1.27 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 2.77 6.40 -2.39 -0.02 2.76 16 35 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.07 3.12 6.79 -2.39 -0.02 3.10 16 37 H -0.04 -2.57 8.12 -2.39 -0.02 -2.59 16 38 H 0.01 0.43 8.03 -2.38 -0.02 0.41 16 39 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.08 2.90 8.07 -2.39 -0.02 2.88 16 42 H 0.10 2.63 8.07 -2.39 -0.02 2.61 16 43 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -73.33 345.54 -1.43 -74.76 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.98 Total: 7.53 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 6.30 Total: 1.71 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -9.85 Total: -123.90 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.88 Total: -7.78 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -73.33 -1.43 -74.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206644540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.712 kcal (2) G-P(sol) polarization free energy of solvation -73.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds