Wall clock time and date at job start Tue Mar 31 2020 07:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00144 * 2 1 4 4 C 1.39001 * 119.99734 * 179.97438 * 2 1 3 5 5 C 1.39138 * 119.70801 * 5.02859 * 4 2 1 6 6 C 1.38296 * 119.09585 * 179.97438 * 5 4 2 7 7 C 1.38878 * 118.50930 * 359.74644 * 6 5 4 8 8 C 1.38027 * 119.32635 * 0.49393 * 7 6 5 9 9 C 1.50701 * 119.56900 * 179.77081 * 8 7 6 10 10 O 1.42899 * 109.47741 * 359.72995 * 9 8 7 11 11 C 1.42895 * 114.00481 * 179.97438 * 10 9 8 12 12 C 1.53514 * 114.17121 * 210.00069 * 11 10 9 13 13 N 1.47483 * 87.92777 * 220.32774 * 12 11 10 14 14 C 1.46903 * 110.99717 * 138.70421 * 13 12 11 15 15 C 1.50694 * 109.47066 * 169.99804 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47480 * 87.83900 * 27.00973 * 13 12 11 24 24 N 1.31970 * 120.85587 * 359.49755 * 8 7 6 25 25 H 1.08993 * 109.47386 * 270.00686 * 1 2 3 26 26 H 1.09001 * 109.47116 * 30.00642 * 1 2 3 27 27 H 1.08997 * 109.47124 * 150.00261 * 1 2 3 28 28 H 1.09005 * 109.47160 * 269.99558 * 3 2 1 29 29 H 1.08999 * 109.47357 * 29.99536 * 3 2 1 30 30 H 1.09001 * 109.47780 * 149.99516 * 3 2 1 31 31 H 1.07998 * 120.45053 * 359.95305 * 5 4 2 32 32 H 1.08007 * 120.74518 * 180.02562 * 6 5 4 33 33 H 1.07999 * 120.33973 * 180.27181 * 7 6 5 34 34 H 1.09006 * 109.47069 * 239.72763 * 9 8 7 35 35 H 1.09002 * 109.46895 * 119.72956 * 9 8 7 36 36 H 1.09002 * 113.38161 * 343.08499 * 11 10 9 37 37 H 1.09000 * 113.47331 * 105.56452 * 12 11 10 38 38 H 1.08997 * 113.47627 * 335.09577 * 12 11 10 39 39 H 1.09007 * 109.47052 * 49.99488 * 14 13 12 40 40 H 1.09003 * 109.46808 * 290.00181 * 14 13 12 41 41 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 42 42 H 1.09004 * 113.47132 * 87.75237 * 23 13 12 43 43 H 1.09000 * 113.47538 * 218.21976 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1599 -1.2038 0.0005 5 6 1.4621 -2.4029 -0.1049 6 6 2.1663 -3.5932 -0.1036 7 6 3.5505 -3.5443 -0.0019 8 6 4.1777 -2.3194 0.1045 9 6 5.6791 -2.2603 0.2203 10 8 6.2109 -3.5866 0.2026 11 6 7.6349 -3.6433 0.3070 12 6 8.2696 -4.8487 -0.4007 13 7 9.1873 -4.9716 0.7473 14 6 9.3759 -6.3794 1.1221 15 6 10.4956 -6.4865 2.1250 16 1 11.0154 -5.5978 2.4511 17 6 10.8571 -7.7194 2.6256 18 7 10.2245 -8.8017 2.2282 19 14 12.2455 -7.8522 3.8682 20 1 13.5332 -8.0417 3.1534 21 1 12.3067 -6.6082 4.6770 22 1 12.0002 -9.0123 4.7622 23 6 8.1449 -4.3389 1.5769 24 7 3.4801 -1.1992 0.1007 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 2.3793 1.5833 -1.0277 29 1 1.6084 2.0284 0.5137 30 1 3.1499 1.1385 0.5139 31 1 0.3852 -2.4041 -0.1862 32 1 1.6516 -4.5393 -0.1844 33 1 4.1300 -4.4557 -0.0024 34 1 5.9524 -1.7717 1.1556 35 1 6.0861 -1.6945 -0.6177 36 1 8.1226 -2.6923 0.0927 37 1 8.7722 -4.5899 -1.3326 38 1 7.5919 -5.6957 -0.5075 39 1 9.6259 -6.9613 0.2349 40 1 8.4560 -6.7647 1.5619 41 1 10.4791 -9.6690 2.5801 42 1 7.4340 -5.0500 1.9977 43 1 8.5419 -3.6482 2.3208 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223512068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:59 Heat of formation + Delta-G solvation = 50.829817 kcal Electronic energy + Delta-G solvation = -22256.985607 eV Core-core repulsion = 18918.326544 eV Total energy + Delta-G solvation = -3338.659063 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.48894 -39.49614 -37.23483 -36.18637 -32.88840 -32.68592 -31.05365 -29.13339 -28.64056 -26.59712 -25.42915 -25.33640 -24.82011 -22.27042 -21.63370 -21.18254 -19.41765 -17.62703 -17.00034 -16.39947 -16.06655 -15.77320 -15.63083 -15.39748 -15.28472 -14.58578 -14.36359 -14.24492 -13.79364 -13.53674 -13.09817 -12.96457 -12.90732 -12.52687 -12.29557 -12.14396 -12.00561 -11.76635 -11.61765 -11.29194 -11.16154 -10.86996 -10.52081 -10.19369 -10.15840 -9.74449 -9.68537 -9.48531 -9.20492 -9.08981 -8.41223 -7.90258 -7.70711 -6.01460 -4.02587 1.14035 1.41737 2.63412 3.34013 3.39405 3.43735 3.51691 3.78241 4.43511 4.49272 4.67879 4.72060 4.88588 4.90259 4.98568 5.01238 5.09058 5.16835 5.20835 5.29956 5.33818 5.36278 5.41367 5.45263 5.48118 5.63389 5.64822 5.87444 6.00970 6.10892 6.19765 6.28765 6.35509 6.43454 6.49981 6.62523 6.71115 7.14796 7.21667 7.42167 7.67133 7.87693 8.02914 8.12090 8.47063 9.04684 9.61217 11.09667 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035829 B = 0.002402 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.298631 B =11652.344484 C =11879.484093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.622 5.622 3 C 0.100 3.900 4 C 0.401 3.599 5 C -0.245 4.245 6 C -0.036 4.036 7 C -0.203 4.203 8 C 0.176 3.824 9 C 0.114 3.886 10 O -0.371 6.371 11 C 0.054 3.946 12 C -0.002 4.002 13 N -0.464 5.464 14 C 0.162 3.838 15 C -0.505 4.505 16 H 0.063 0.937 17 C 0.053 3.947 18 N -0.900 5.900 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.273 1.273 22 H -0.287 1.287 23 C -0.005 4.005 24 N -0.541 5.541 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.144 0.856 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.029 0.971 40 H 0.006 0.994 41 H 0.261 0.739 42 H 0.072 0.928 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.654 17.504 -6.018 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.338 5.338 3 C -0.043 4.043 4 C 0.167 3.833 5 C -0.269 4.269 6 C -0.061 4.061 7 C -0.225 4.225 8 C 0.038 3.962 9 C 0.037 3.963 10 O -0.289 6.289 11 C -0.004 4.004 12 C -0.131 4.131 13 N -0.189 5.189 14 C 0.035 3.965 15 C -0.543 4.543 16 H 0.082 0.918 17 C -0.148 4.148 18 N -0.539 5.539 19 Si 0.728 3.272 20 H -0.206 1.206 21 H -0.198 1.198 22 H -0.213 1.213 23 C -0.134 4.134 24 N -0.260 5.260 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.023 0.977 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.738 18.333 -5.957 27.589 hybrid contribution -0.414 -1.265 0.708 1.508 sum -20.152 17.068 -5.249 26.925 Atomic orbital electron populations 1.21669 0.78637 1.02881 1.01419 1.46117 1.04897 1.03036 1.79756 1.21531 0.97737 0.83907 1.01110 1.18109 0.87951 0.85831 0.91419 1.21398 1.00815 0.91964 1.12725 1.21375 0.94036 0.97761 0.92974 1.21719 0.94714 0.99749 1.06354 1.20485 0.94875 0.88024 0.92778 1.20914 0.88258 0.85540 1.01634 1.87890 1.21350 1.25360 1.94266 1.24043 0.79041 0.98899 0.98422 1.24053 0.94836 0.96622 0.97630 1.68960 1.27962 1.19773 1.02188 1.20260 0.96940 0.82583 0.96667 1.21102 1.16717 0.93082 1.23416 0.91847 1.25018 0.97013 0.95713 0.97061 1.69961 1.41424 0.98268 1.44294 0.86462 0.82178 0.77540 0.81021 1.20619 1.19836 1.21304 1.24255 0.94129 0.98777 0.96265 1.66588 1.06361 1.31427 1.21608 0.93114 0.91173 0.91115 0.93664 0.92094 0.90196 0.85221 0.84901 0.83801 0.90998 0.91100 0.88573 0.90303 0.91225 0.95250 0.97664 0.92915 0.91000 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.56 10.28 59.85 0.62 1.17 16 2 N -0.62 -5.79 3.39 -189.67 -0.64 -6.43 16 3 C 0.10 0.79 10.50 59.84 0.63 1.42 16 4 C 0.40 4.74 7.37 -155.02 -1.14 3.60 16 5 C -0.24 -2.55 9.27 -39.23 -0.36 -2.91 16 6 C -0.04 -0.39 10.16 -39.32 -0.40 -0.79 16 7 C -0.20 -2.63 9.41 -39.42 -0.37 -3.00 16 8 C 0.18 2.38 6.78 -82.61 -0.56 1.82 16 9 C 0.11 1.47 6.32 36.01 0.23 1.70 16 10 O -0.37 -5.60 8.83 -35.23 -0.31 -5.91 16 11 C 0.05 0.86 4.65 -26.20 -0.12 0.74 16 12 C 0.00 -0.04 7.52 -7.53 -0.06 -0.09 16 13 N -0.46 -10.33 6.32 -246.08 -1.55 -11.88 16 14 C 0.16 4.31 4.57 -4.98 -0.02 4.29 16 15 C -0.50 -14.63 9.39 -34.44 -0.32 -14.96 16 16 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 19 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 C 0.00 -0.09 7.55 -7.54 -0.06 -0.15 16 24 N -0.54 -7.22 8.99 -8.67 -0.08 -7.30 16 25 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 27 H 0.07 0.36 5.98 -51.93 -0.31 0.05 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 30 H 0.08 0.75 7.30 -51.93 -0.38 0.37 16 31 H 0.13 1.00 6.03 -52.49 -0.32 0.69 16 32 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 33 H 0.14 1.93 6.99 -52.49 -0.37 1.57 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.34 7.88 -51.93 -0.41 0.93 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 39 H 0.03 0.83 8.08 -51.92 -0.42 0.41 16 40 H 0.01 0.15 7.30 -51.93 -0.38 -0.22 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.07 1.47 7.42 -51.93 -0.39 1.08 16 43 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -32.83 354.97 -10.28 -43.12 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.72 Total: -1.83 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.04 Total: -5.72 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -1.54 Total: -52.04 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.31 Total: -5.91 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.83 -10.28 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223512068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.947 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds