Wall clock time and date at job start Tue Mar 31 2020 07:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00144 * 2 1 4 4 C 1.39001 * 119.99734 * 179.97438 * 2 1 3 5 5 C 1.39138 * 119.70801 * 5.02859 * 4 2 1 6 6 C 1.38296 * 119.09585 * 179.97438 * 5 4 2 7 7 C 1.38878 * 118.50930 * 359.74644 * 6 5 4 8 8 C 1.38027 * 119.32635 * 0.49393 * 7 6 5 9 9 C 1.50701 * 119.56900 * 179.77081 * 8 7 6 10 10 O 1.42899 * 109.47741 * 359.72995 * 9 8 7 11 11 C 1.42895 * 114.00481 * 179.97438 * 10 9 8 12 12 C 1.53514 * 114.17121 * 210.00069 * 11 10 9 13 13 N 1.47483 * 87.92777 * 220.32774 * 12 11 10 14 14 C 1.46903 * 110.99717 * 138.70421 * 13 12 11 15 15 C 1.50694 * 109.47066 * 169.99804 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47480 * 87.83900 * 27.00973 * 13 12 11 24 24 N 1.31970 * 120.85587 * 359.49755 * 8 7 6 25 25 H 1.08993 * 109.47386 * 270.00686 * 1 2 3 26 26 H 1.09001 * 109.47116 * 30.00642 * 1 2 3 27 27 H 1.08997 * 109.47124 * 150.00261 * 1 2 3 28 28 H 1.09005 * 109.47160 * 269.99558 * 3 2 1 29 29 H 1.08999 * 109.47357 * 29.99536 * 3 2 1 30 30 H 1.09001 * 109.47780 * 149.99516 * 3 2 1 31 31 H 1.07998 * 120.45053 * 359.95305 * 5 4 2 32 32 H 1.08007 * 120.74518 * 180.02562 * 6 5 4 33 33 H 1.07999 * 120.33973 * 180.27181 * 7 6 5 34 34 H 1.09006 * 109.47069 * 239.72763 * 9 8 7 35 35 H 1.09002 * 109.46895 * 119.72956 * 9 8 7 36 36 H 1.09002 * 113.38161 * 343.08499 * 11 10 9 37 37 H 1.09000 * 113.47331 * 105.56452 * 12 11 10 38 38 H 1.08997 * 113.47627 * 335.09577 * 12 11 10 39 39 H 1.09007 * 109.47052 * 49.99488 * 14 13 12 40 40 H 1.09003 * 109.46808 * 290.00181 * 14 13 12 41 41 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 42 42 H 1.09004 * 113.47132 * 87.75237 * 23 13 12 43 43 H 1.09000 * 113.47538 * 218.21976 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1599 -1.2038 0.0005 5 6 1.4621 -2.4029 -0.1049 6 6 2.1663 -3.5932 -0.1036 7 6 3.5505 -3.5443 -0.0019 8 6 4.1777 -2.3194 0.1045 9 6 5.6791 -2.2603 0.2203 10 8 6.2109 -3.5866 0.2026 11 6 7.6349 -3.6433 0.3070 12 6 8.2696 -4.8487 -0.4007 13 7 9.1873 -4.9716 0.7473 14 6 9.3759 -6.3794 1.1221 15 6 10.4956 -6.4865 2.1250 16 1 11.0154 -5.5978 2.4511 17 6 10.8571 -7.7194 2.6256 18 7 10.2245 -8.8017 2.2282 19 14 12.2455 -7.8522 3.8682 20 1 13.5332 -8.0417 3.1534 21 1 12.3067 -6.6082 4.6770 22 1 12.0002 -9.0123 4.7622 23 6 8.1449 -4.3389 1.5769 24 7 3.4801 -1.1992 0.1007 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 2.3793 1.5833 -1.0277 29 1 1.6084 2.0284 0.5137 30 1 3.1499 1.1385 0.5139 31 1 0.3852 -2.4041 -0.1862 32 1 1.6516 -4.5393 -0.1844 33 1 4.1300 -4.4557 -0.0024 34 1 5.9524 -1.7717 1.1556 35 1 6.0861 -1.6945 -0.6177 36 1 8.1226 -2.6923 0.0927 37 1 8.7722 -4.5899 -1.3326 38 1 7.5919 -5.6957 -0.5075 39 1 9.6259 -6.9613 0.2349 40 1 8.4560 -6.7647 1.5619 41 1 10.4791 -9.6690 2.5801 42 1 7.4340 -5.0500 1.9977 43 1 8.5419 -3.6482 2.3208 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223512068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:58 Heat of formation + Delta-G solvation = 28.404654 kcal Electronic energy + Delta-G solvation = -22257.958035 eV Core-core repulsion = 18918.326544 eV Total energy + Delta-G solvation = -3339.631491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39499 -40.96230 -38.28616 -37.16075 -35.01010 -33.60139 -32.05263 -30.89793 -29.30181 -27.67692 -26.98197 -26.55705 -26.12269 -23.47587 -23.10143 -22.09179 -20.92951 -18.67363 -18.42239 -17.94277 -17.22357 -16.90631 -16.74821 -16.50049 -16.25586 -16.12623 -15.61958 -15.24500 -15.19774 -14.69800 -14.25185 -14.11175 -13.96391 -13.68281 -13.44324 -13.39119 -13.03337 -12.97228 -12.92605 -12.60857 -12.56598 -12.46222 -12.25179 -12.08785 -11.64062 -11.21609 -10.99400 -10.71196 -10.62142 -10.38969 -10.23880 -9.73798 -8.46681 -8.23645 -6.34391 0.26033 0.53702 1.39869 1.42064 1.53491 1.92061 2.37510 2.46161 2.89229 3.08375 3.39686 3.45589 3.58780 3.90190 4.02321 4.07765 4.22010 4.28137 4.36217 4.46132 4.48026 4.50987 4.54068 4.54332 4.60145 4.68374 4.73716 4.78971 4.81733 4.88317 4.92537 4.94522 5.00277 5.05909 5.16606 5.43086 5.55749 5.64771 5.74798 6.01999 6.05753 6.24053 6.38749 6.40519 6.79672 7.15994 7.35042 8.87824 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035829 B = 0.002402 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.298631 B =11652.344484 C =11879.484093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.625 5.625 3 C 0.098 3.902 4 C 0.385 3.615 5 C -0.242 4.242 6 C -0.036 4.036 7 C -0.226 4.226 8 C 0.158 3.842 9 C 0.115 3.885 10 O -0.379 6.379 11 C 0.085 3.915 12 C -0.006 4.006 13 N -0.479 5.479 14 C 0.177 3.823 15 C -0.527 4.527 16 H 0.061 0.939 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.974 3.026 20 H -0.271 1.271 21 H -0.265 1.265 22 H -0.280 1.280 23 C -0.012 4.012 24 N -0.559 5.559 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.131 0.869 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.002 0.998 40 H -0.022 1.022 41 H 0.266 0.734 42 H 0.052 0.948 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.636 19.314 -5.895 29.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.340 5.340 3 C -0.044 4.044 4 C 0.150 3.850 5 C -0.267 4.267 6 C -0.062 4.062 7 C -0.248 4.248 8 C 0.021 3.979 9 C 0.038 3.962 10 O -0.297 6.297 11 C 0.027 3.973 12 C -0.135 4.135 13 N -0.203 5.203 14 C 0.050 3.950 15 C -0.566 4.566 16 H 0.079 0.921 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.798 3.202 20 H -0.196 1.196 21 H -0.189 1.189 22 H -0.205 1.205 23 C -0.141 4.141 24 N -0.280 5.280 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.177 0.823 32 H 0.175 0.825 33 H 0.149 0.851 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.145 0.855 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.021 0.979 40 H -0.004 1.004 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.750 20.179 -5.845 29.529 hybrid contribution -0.267 -1.750 0.628 1.879 sum -21.017 18.429 -5.217 28.435 Atomic orbital electron populations 1.21911 0.76525 1.04358 1.02348 1.46456 1.06267 1.02533 1.78749 1.21590 0.97415 0.84071 1.01373 1.18545 0.87852 0.87367 0.91213 1.21718 1.02233 0.91197 1.11509 1.21679 0.93311 0.99212 0.91961 1.21729 0.95879 0.99118 1.08110 1.20561 0.95145 0.88455 0.93738 1.21020 0.88345 0.84311 1.02559 1.87887 1.20608 1.27159 1.94023 1.23732 0.79826 0.98933 0.94788 1.24114 0.94387 0.97562 0.97459 1.68851 1.30287 1.16587 1.04607 1.19911 0.95151 0.85045 0.94889 1.21428 1.17511 0.93343 1.24282 0.92095 1.25992 0.99701 0.95181 0.99048 1.70087 1.42988 0.98899 1.45500 0.85313 0.78661 0.77906 0.78312 1.19619 1.18904 1.20524 1.24300 0.93280 0.98691 0.97857 1.66588 1.07375 1.31288 1.22706 0.92362 0.89129 0.90279 0.93389 0.89616 0.92070 0.82349 0.82491 0.85140 0.90390 0.89613 0.85480 0.88232 0.92465 0.97950 1.00399 0.92554 0.92951 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.28 127.77 1.31 2.09 16 2 N -0.63 -10.38 3.39 -754.00 -2.56 -12.94 16 3 C 0.10 1.40 10.50 127.77 1.34 2.74 16 4 C 0.39 8.61 7.37 133.07 0.98 9.59 16 5 C -0.24 -4.60 9.27 22.50 0.21 -4.39 16 6 C -0.04 -0.74 10.16 22.44 0.23 -0.52 16 7 C -0.23 -5.87 9.41 22.37 0.21 -5.66 16 8 C 0.16 4.24 6.78 42.49 0.29 4.53 16 9 C 0.11 2.87 6.32 71.24 0.45 3.32 16 10 O -0.38 -11.33 8.83 -148.98 -1.32 -12.64 16 11 C 0.09 2.64 4.65 30.94 0.14 2.78 16 12 C -0.01 -0.22 7.52 83.58 0.63 0.40 16 13 N -0.48 -21.69 6.32 -932.85 -5.89 -27.58 16 14 C 0.18 9.87 4.57 85.55 0.39 10.26 16 15 C -0.53 -31.26 9.39 25.60 0.24 -31.02 16 16 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 17 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 18 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 19 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 C -0.01 -0.46 7.55 83.58 0.63 0.17 16 24 N -0.56 -14.65 8.99 -181.33 -1.63 -16.28 16 25 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.09 0.42 8.07 -2.39 -0.02 0.41 16 27 H 0.08 0.55 5.98 -2.39 -0.01 0.53 16 28 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.09 0.77 8.07 -2.39 -0.02 0.75 16 30 H 0.06 1.11 7.30 -2.39 -0.02 1.09 16 31 H 0.16 1.97 6.03 -2.91 -0.02 1.95 16 32 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 33 H 0.13 3.65 6.99 -2.91 -0.02 3.63 16 34 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.13 3.21 7.88 -2.39 -0.02 3.19 16 37 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.06 2.24 7.91 -2.39 -0.02 2.22 16 39 H 0.00 0.14 8.08 -2.38 -0.02 0.12 16 40 H -0.02 -1.30 7.30 -2.39 -0.02 -1.32 16 41 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.05 2.24 7.42 -2.39 -0.02 2.22 16 43 H 0.09 3.13 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -72.41 354.97 -0.58 -72.99 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.99 Total: 11.69 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 7.52 Total: -5.31 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -9.79 Total: -114.13 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -1.32 Total: -12.64 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -72.41 -0.58 -72.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223512068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.394 kcal (2) G-P(sol) polarization free energy of solvation -72.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds