Wall clock time and date at job start Tue Mar 31 2020 07:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99907 * 2 1 4 4 C 1.39005 * 120.00244 * 179.97438 * 2 1 3 5 5 C 1.39138 * 119.70402 * 5.01915 * 4 2 1 6 6 C 1.38296 * 119.09752 * 179.97438 * 5 4 2 7 7 C 1.38884 * 118.50265 * 359.75772 * 6 5 4 8 8 C 1.38028 * 119.33161 * 0.49189 * 7 6 5 9 9 C 1.50696 * 119.57249 * 179.77411 * 8 7 6 10 10 O 1.42903 * 109.47108 * 359.72134 * 9 8 7 11 11 C 1.42900 * 114.00063 * 179.97438 * 10 9 8 12 12 H 1.09009 * 110.64014 * 328.31518 * 11 10 9 13 13 C 1.55155 * 110.87436 * 205.06406 * 11 10 9 14 14 C 1.55132 * 101.48719 * 205.89819 * 13 11 10 15 15 N 1.47421 * 104.71877 * 37.29608 * 14 13 11 16 16 C 1.36935 * 125.64725 * 155.81751 * 15 14 13 17 17 H 1.08000 * 120.00518 * 179.42103 * 16 15 14 18 18 C 1.38817 * 119.99990 * 359.68754 * 16 15 14 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47028 * 60.00888 * 20 18 16 22 22 H 1.48503 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47412 * 300.00497 * 20 18 16 24 24 C 1.47026 * 108.70759 * 335.55192 * 15 14 13 25 25 N 1.31972 * 120.85246 * 359.48951 * 8 7 6 26 26 H 1.09004 * 109.46717 * 240.00236 * 1 2 3 27 27 H 1.08994 * 109.46990 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46614 * 120.00351 * 1 2 3 29 29 H 1.09006 * 109.46648 * 269.99635 * 3 2 1 30 30 H 1.09000 * 109.47376 * 29.99472 * 3 2 1 31 31 H 1.08993 * 109.47381 * 150.00138 * 3 2 1 32 32 H 1.08000 * 120.45120 * 359.96200 * 5 4 2 33 33 H 1.07992 * 120.74814 * 180.02562 * 6 5 4 34 34 H 1.08006 * 120.33497 * 180.26117 * 7 6 5 35 35 H 1.08999 * 109.47153 * 239.72220 * 9 8 7 36 36 H 1.09004 * 109.47257 * 119.72149 * 9 8 7 37 37 H 1.08996 * 111.00640 * 324.14170 * 13 11 10 38 38 H 1.09007 * 111.00169 * 87.95688 * 13 11 10 39 39 H 1.09001 * 110.49783 * 278.45863 * 14 13 11 40 40 H 1.09000 * 110.33989 * 156.06084 * 14 13 11 41 41 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.87892 * 120.70064 * 24 15 14 43 43 H 1.09001 * 109.88127 * 241.71491 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1601 -1.2038 0.0005 5 6 1.4623 -2.4029 -0.1047 6 6 2.1664 -3.5932 -0.1034 7 6 3.5507 -3.5442 -0.0017 8 6 4.1779 -2.3193 0.1047 9 6 5.6793 -2.2601 0.2205 10 8 6.2110 -3.5863 0.2030 11 6 7.6351 -3.6430 0.3073 12 1 8.0896 -2.7686 -0.1586 13 6 8.1842 -4.9494 -0.3245 14 6 9.5124 -5.1352 0.4553 15 7 9.2047 -4.6973 1.8289 16 6 9.8694 -5.0906 2.9596 17 1 9.5717 -4.7039 3.9231 18 6 10.9295 -5.9820 2.8670 19 7 11.2960 -6.4488 1.6922 20 14 11.8367 -6.5179 4.4094 21 1 10.8869 -7.1852 5.3356 22 1 12.9195 -7.4657 4.0427 23 1 12.4252 -5.3287 5.0760 24 6 8.0700 -3.7634 1.7831 25 7 3.4802 -1.1991 0.1007 26 1 -0.3633 -0.5138 0.8901 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3632 -0.5139 -0.8900 29 1 2.3792 1.5833 -1.0278 30 1 1.6084 2.0285 0.5137 31 1 3.1499 1.1385 0.5138 32 1 0.3853 -2.4041 -0.1860 33 1 1.6519 -4.5392 -0.1841 34 1 4.1303 -4.4556 -0.0021 35 1 5.9525 -1.7714 1.1557 36 1 6.0863 -1.6943 -0.6176 37 1 7.5047 -5.7835 -0.1498 38 1 8.3731 -4.8186 -1.3901 39 1 10.2974 -4.5129 0.0257 40 1 9.8118 -6.1832 0.4493 41 1 12.0369 -7.0714 1.6274 42 1 7.2461 -4.1516 2.3819 43 1 8.3767 -2.7886 2.1624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223512805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:02 Heat of formation + Delta-G solvation = 18.777952 kcal Electronic energy + Delta-G solvation = -22700.419689 eV Core-core repulsion = 19360.370753 eV Total energy + Delta-G solvation = -3340.048936 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.32734 -39.88267 -37.92757 -37.09180 -34.26831 -33.54240 -31.97312 -30.97567 -29.31921 -28.81310 -27.45047 -26.21222 -26.07653 -23.10253 -22.29595 -21.97140 -21.66625 -18.99653 -18.39091 -17.87206 -17.30779 -16.72211 -16.58368 -16.47139 -16.14791 -15.95081 -15.55355 -15.31390 -14.93523 -14.35162 -14.23997 -14.15981 -13.62465 -13.51041 -13.43784 -13.09731 -13.05978 -12.95789 -12.78378 -12.66126 -12.55589 -12.47416 -12.06926 -12.03774 -11.76268 -11.31915 -10.98356 -10.79603 -10.74846 -10.38208 -10.26008 -8.91155 -8.47367 -7.78052 -5.23463 0.27205 0.55205 1.46842 1.50555 1.56975 1.93396 2.43394 2.54344 2.90425 3.31662 3.58206 3.71793 3.85417 3.94076 4.07964 4.09357 4.19244 4.20557 4.37498 4.43215 4.46530 4.53388 4.53785 4.60310 4.66805 4.76068 4.79932 4.81980 4.90666 4.97508 5.00297 5.01645 5.06757 5.19492 5.42722 5.44926 5.61687 5.66779 5.78436 6.04421 6.24792 6.31704 6.39070 7.09600 7.17585 7.75735 8.39337 9.23700 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.033441 B = 0.002691 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.101728 B =10403.750063 C =10542.002325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.626 5.626 3 C 0.098 3.902 4 C 0.384 3.616 5 C -0.238 4.238 6 C -0.035 4.035 7 C -0.222 4.222 8 C 0.158 3.842 9 C 0.114 3.886 10 O -0.376 6.376 11 C 0.094 3.906 12 H 0.086 0.914 13 C -0.122 4.122 14 C 0.154 3.846 15 N -0.625 5.625 16 C -0.244 4.244 17 H 0.078 0.922 18 C -0.066 4.066 19 N -0.948 5.948 20 Si 0.984 3.016 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.113 3.887 25 N -0.562 5.562 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.134 0.866 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.093 0.907 39 H -0.003 1.003 40 H 0.079 0.921 41 H 0.249 0.751 42 H 0.025 0.975 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.274 12.597 -6.628 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.341 5.341 3 C -0.045 4.045 4 C 0.148 3.852 5 C -0.262 4.262 6 C -0.061 4.061 7 C -0.244 4.244 8 C 0.021 3.979 9 C 0.037 3.963 10 O -0.294 6.294 11 C 0.036 3.964 12 H 0.104 0.896 13 C -0.160 4.160 14 C 0.029 3.971 15 N -0.352 5.352 16 C -0.373 4.373 17 H 0.096 0.904 18 C -0.258 4.258 19 N -0.598 5.598 20 Si 0.811 3.189 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.204 1.204 24 C -0.013 4.013 25 N -0.282 5.282 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.175 0.825 33 H 0.178 0.822 34 H 0.152 0.848 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.015 0.985 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -22.916 13.286 -6.515 27.278 hybrid contribution 0.673 -0.850 0.814 1.356 sum -22.243 12.436 -5.701 26.113 Atomic orbital electron populations 1.21870 0.76373 1.04517 1.02005 1.46467 1.06301 1.02496 1.78807 1.21620 0.97447 0.84102 1.01315 1.18541 0.87739 0.87440 0.91439 1.21675 1.02097 0.91158 1.11302 1.21690 0.93168 0.99255 0.91939 1.21744 0.95926 0.99027 1.07751 1.20476 0.94775 0.88645 0.93979 1.20950 0.88757 0.84641 1.01952 1.87847 1.20548 1.26605 1.94409 1.22991 0.79788 0.99292 0.94293 0.89610 1.22985 0.97031 0.96179 0.99834 1.21819 0.91923 1.00920 0.82453 1.44689 1.35388 1.51376 1.03757 1.19416 1.10177 1.21110 0.86582 0.90398 1.25663 0.99787 1.00131 1.00235 1.70008 1.30473 1.36153 1.23146 0.85082 0.77743 0.77679 0.78387 1.20337 1.21602 1.20404 1.21870 0.90126 0.92704 0.96629 1.66565 1.07531 1.31440 1.22650 0.92057 0.88261 0.91690 0.93482 0.89406 0.92340 0.82493 0.82168 0.84837 0.91374 0.90094 0.91513 0.88863 0.98487 0.90287 0.94097 0.95726 0.95671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 9.40 127.77 1.20 2.08 16 2 N -0.63 -11.14 3.39 -753.96 -2.56 -13.70 16 3 C 0.10 1.53 10.47 127.77 1.34 2.87 16 4 C 0.38 9.12 7.37 133.07 0.98 10.10 16 5 C -0.24 -4.73 9.34 22.50 0.21 -4.52 16 6 C -0.03 -0.74 10.17 22.44 0.23 -0.51 16 7 C -0.22 -6.03 9.41 22.37 0.21 -5.82 16 8 C 0.16 4.62 6.78 42.49 0.29 4.90 16 9 C 0.11 3.32 6.35 71.23 0.45 3.77 16 10 O -0.38 -12.60 8.52 -148.98 -1.27 -13.87 16 11 C 0.09 3.45 3.39 31.78 0.11 3.56 16 12 H 0.09 2.80 7.88 -2.38 -0.02 2.78 16 13 C -0.12 -4.76 6.83 32.06 0.22 -4.54 16 14 C 0.15 7.77 5.91 86.93 0.51 8.28 16 15 N -0.62 -33.75 3.39 -691.53 -2.35 -36.10 16 16 C -0.24 -14.20 10.27 84.04 0.86 -13.34 16 17 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 18 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 19 N -0.95 -57.20 10.08 21.65 0.22 -56.98 16 20 Si 0.98 46.42 29.55 68.60 2.03 48.44 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 C 0.11 5.00 7.01 86.73 0.61 5.60 16 25 N -0.56 -15.92 8.99 -181.34 -1.63 -17.55 16 26 H 0.06 0.52 8.11 -2.38 -0.02 0.50 16 27 H 0.10 0.48 7.79 -2.39 -0.02 0.46 16 28 H 0.06 0.50 7.73 -2.39 -0.02 0.48 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.09 0.87 7.92 -2.39 -0.02 0.85 16 31 H 0.06 1.17 7.30 -2.39 -0.02 1.16 16 32 H 0.16 2.08 6.71 -2.91 -0.02 2.06 16 33 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.13 3.83 6.99 -2.91 -0.02 3.81 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.08 2.13 8.11 -2.38 -0.02 2.11 16 37 H 0.07 2.66 8.14 -2.39 -0.02 2.65 16 38 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 39 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.08 4.52 5.86 -2.39 -0.01 4.51 16 41 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.02 1.13 8.06 -2.39 -0.02 1.11 16 43 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -71.05 348.93 3.11 -67.94 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.98 Total: 12.72 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 7.69 Total: 9.10 kcal Atomic # 7 Polarization: -118.01 SS G_CDS: -6.31 Total: -124.33 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.27 Total: -13.87 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -71.05 3.11 -67.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223512805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.715 kcal (2) G-P(sol) polarization free energy of solvation -71.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds