Wall clock time and date at job start Tue Mar 31 2020 07:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46505 * 119.99883 * 2 1 4 4 C 1.39004 * 120.00559 * 180.02562 * 2 1 3 5 5 C 1.39137 * 119.70259 * 10.78685 * 4 2 1 6 6 C 1.38304 * 119.09548 * 179.97438 * 5 4 2 7 7 C 1.38880 * 118.50579 * 359.75165 * 6 5 4 8 8 C 1.38030 * 119.32696 * 0.49982 * 7 6 5 9 9 C 1.50700 * 119.56813 * 179.76584 * 8 7 6 10 10 O 1.42905 * 109.47388 * 359.72727 * 9 8 7 11 11 C 1.42895 * 114.00221 * 179.97438 * 10 9 8 12 12 H 1.09008 * 110.88332 * 32.43050 * 11 10 9 13 13 C 1.55157 * 111.00404 * 156.34710 * 11 10 9 14 14 C 1.54333 * 103.02167 * 153.38550 * 13 11 10 15 15 N 1.47029 * 107.26161 * 338.14318 * 14 13 11 16 16 C 1.36938 * 125.64555 * 178.85235 * 15 14 13 17 17 H 1.07995 * 120.00022 * 172.11171 * 16 15 14 18 18 C 1.38819 * 120.00025 * 352.11024 * 16 15 14 19 19 N 1.31618 * 119.99768 * 151.77925 * 18 16 15 20 20 Si 1.86793 * 119.99804 * 331.78041 * 18 16 15 21 21 H 1.48496 * 109.47229 * 85.19468 * 20 18 16 22 22 H 1.48503 * 109.47395 * 325.18897 * 20 18 16 23 23 H 1.48501 * 109.46852 * 205.19157 * 20 18 16 24 24 C 1.47426 * 108.70509 * 358.58294 * 15 14 13 25 25 N 1.31966 * 120.85835 * 359.48601 * 8 7 6 26 26 H 1.09006 * 109.46631 * 185.26924 * 1 2 3 27 27 H 1.08999 * 109.47153 * 305.26656 * 1 2 3 28 28 H 1.09003 * 109.47272 * 65.27192 * 1 2 3 29 29 H 1.09004 * 109.46896 * 269.99889 * 3 2 1 30 30 H 1.08996 * 109.46983 * 29.99810 * 3 2 1 31 31 H 1.09000 * 109.47299 * 150.00363 * 3 2 1 32 32 H 1.08003 * 120.45561 * 359.96535 * 5 4 2 33 33 H 1.07994 * 120.74507 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.33427 * 180.26352 * 7 6 5 35 35 H 1.08993 * 109.47057 * 239.72114 * 9 8 7 36 36 H 1.09004 * 109.46609 * 119.72213 * 9 8 7 37 37 H 1.09005 * 110.72105 * 271.93891 * 13 11 10 38 38 H 1.09001 * 110.71776 * 35.21465 * 13 11 10 39 39 H 1.08996 * 109.99207 * 218.66617 * 14 13 11 40 40 H 1.08999 * 109.78138 * 97.49583 * 14 13 11 41 41 H 0.97005 * 119.99945 * 5.01062 * 19 18 16 42 42 H 1.08995 * 110.36329 * 143.19518 * 24 15 14 43 43 H 1.08994 * 110.36417 * 265.40951 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1601 -1.2037 -0.0005 5 6 1.4768 -2.3944 -0.2273 6 6 2.1809 -3.5847 -0.2256 7 6 3.5510 -3.5441 -0.0016 8 6 4.1637 -2.3275 0.2216 9 6 5.6492 -2.2776 0.4705 10 8 6.1835 -3.6024 0.4314 11 6 7.5932 -3.6675 0.6562 12 1 7.9143 -2.8816 1.3400 13 6 8.0085 -5.0670 1.1820 14 6 9.4752 -5.1914 0.7183 15 7 9.6582 -4.2604 -0.4049 16 6 10.8277 -4.0518 -1.0861 17 1 10.8320 -3.4421 -1.9775 18 6 12.0077 -4.6241 -0.6310 19 7 12.9680 -4.9171 -1.4820 20 14 12.2325 -4.9781 1.1893 21 1 11.6381 -6.2997 1.5136 22 1 11.5571 -3.9225 1.9861 23 1 13.6812 -4.9935 1.5152 24 6 8.3727 -3.5933 -0.6803 25 7 3.4666 -1.2071 0.2143 26 1 -0.3633 -1.0234 0.0944 27 1 -0.3633 0.5933 0.8390 28 1 -0.3634 0.4299 -0.9334 29 1 2.3791 1.5834 -1.0277 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1385 0.5138 32 1 0.4110 -2.3891 -0.4020 33 1 1.6775 -4.5242 -0.3990 34 1 4.1304 -4.4555 0.0018 35 1 5.8389 -1.8381 1.4497 36 1 6.1263 -1.6706 -0.2990 37 1 7.9407 -5.1063 2.2692 38 1 7.3968 -5.8466 0.7279 39 1 9.6774 -6.2113 0.3911 40 1 10.1445 -4.9225 1.5355 41 1 12.8817 -4.6675 -2.4154 42 1 8.5379 -2.5546 -0.9660 43 1 7.8324 -4.1209 -1.4663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223512806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:06 Heat of formation + Delta-G solvation = 45.436370 kcal Electronic energy + Delta-G solvation = -22771.853466 eV Core-core repulsion = 19432.960525 eV Total energy + Delta-G solvation = -3338.892941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.49052 -38.62275 -36.96982 -35.99133 -32.81569 -32.39547 -31.03052 -29.46343 -28.69577 -27.88244 -26.39551 -25.39113 -23.67819 -22.28402 -21.29850 -20.86271 -20.15925 -17.67380 -17.45194 -16.84906 -16.27842 -15.71151 -15.64650 -15.48478 -15.04745 -14.90371 -14.45421 -13.81246 -13.66375 -13.30989 -13.25317 -13.16310 -12.83833 -12.59003 -12.44667 -12.29276 -11.99642 -11.79192 -11.67401 -11.27522 -11.13119 -11.00937 -10.51207 -10.18734 -10.09535 -9.78548 -9.56124 -9.47513 -9.23208 -9.10635 -8.38391 -7.70856 -7.08436 -6.32308 -3.14312 1.13043 1.40087 2.64392 3.44363 3.49989 3.52981 3.71452 3.77010 4.44907 4.62070 4.67065 4.72286 4.95711 5.00720 5.01772 5.07438 5.13202 5.18382 5.27790 5.34432 5.37558 5.41392 5.43357 5.48750 5.49712 5.56016 5.66382 5.66749 5.82950 5.97837 6.10238 6.25834 6.26865 6.48084 6.49307 6.53960 6.60139 6.72959 6.81936 7.15255 7.42610 7.73429 8.03158 8.35967 9.06225 9.61996 10.28149 11.16843 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035116 B = 0.002841 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.167674 B = 9852.965313 C =10130.472735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.623 5.623 3 C 0.099 3.901 4 C 0.402 3.598 5 C -0.246 4.246 6 C -0.036 4.036 7 C -0.203 4.203 8 C 0.178 3.822 9 C 0.114 3.886 10 O -0.374 6.374 11 C 0.072 3.928 12 H 0.072 0.928 13 C -0.120 4.120 14 C 0.116 3.884 15 N -0.608 5.608 16 C -0.332 4.332 17 H 0.077 0.923 18 C -0.020 4.020 19 N -0.916 5.916 20 Si 1.069 2.931 21 H -0.292 1.292 22 H -0.294 1.294 23 H -0.300 1.300 24 C 0.117 3.883 25 N -0.540 5.540 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.030 0.970 41 H 0.263 0.737 42 H 0.043 0.957 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.700 7.810 5.542 28.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.339 5.339 3 C -0.044 4.044 4 C 0.168 3.832 5 C -0.270 4.270 6 C -0.062 4.062 7 C -0.226 4.226 8 C 0.041 3.959 9 C 0.036 3.964 10 O -0.292 6.292 11 C 0.014 3.986 12 H 0.090 0.910 13 C -0.158 4.158 14 C -0.008 4.008 15 N -0.337 5.337 16 C -0.459 4.459 17 H 0.095 0.905 18 C -0.221 4.221 19 N -0.557 5.557 20 Si 0.903 3.097 21 H -0.220 1.220 22 H -0.222 1.222 23 H -0.228 1.228 24 C -0.009 4.009 25 N -0.259 5.259 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.162 0.838 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -25.353 7.948 6.686 27.398 hybrid contribution -1.423 0.311 -1.243 1.914 sum -26.776 8.259 5.443 28.545 Atomic orbital electron populations 1.21712 0.78657 1.03121 1.01299 1.46105 1.04879 1.03032 1.79903 1.21535 0.97800 0.83881 1.01178 1.18126 0.88078 0.85876 0.91133 1.21420 1.01099 0.92245 1.12225 1.21362 0.93957 0.97640 0.93265 1.21705 0.94921 0.99826 1.06099 1.20485 0.94739 0.88011 0.92670 1.20896 0.88382 0.85635 1.01467 1.87789 1.22628 1.25655 1.93125 1.23473 0.79024 0.98273 0.97848 0.91012 1.22614 0.96838 0.96105 1.00284 1.21677 0.93128 0.95098 0.90934 1.44671 1.06322 1.44973 1.37692 1.20010 0.84798 1.34444 1.06649 0.90525 1.25772 0.92490 0.97924 1.05927 1.70926 1.38490 1.41708 1.04558 0.83720 0.74109 0.75906 0.76007 1.22010 1.22184 1.22760 1.22017 0.87673 0.96633 0.94605 1.66594 1.06670 1.31207 1.21404 0.90390 0.92292 0.92682 0.93643 0.92086 0.90078 0.85166 0.84942 0.83810 0.91159 0.90869 0.90998 0.90318 0.93773 0.95262 0.92678 0.93881 0.94724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 10.54 59.85 0.63 1.20 16 2 N -0.62 -6.03 3.39 -189.66 -0.64 -6.68 16 3 C 0.10 0.85 10.59 59.85 0.63 1.48 16 4 C 0.40 4.85 7.33 -155.02 -1.14 3.72 16 5 C -0.25 -2.54 9.24 -39.22 -0.36 -2.91 16 6 C -0.04 -0.38 10.17 -39.32 -0.40 -0.78 16 7 C -0.20 -2.60 9.41 -39.42 -0.37 -2.97 16 8 C 0.18 2.48 6.78 -82.61 -0.56 1.92 16 9 C 0.11 1.58 6.36 36.01 0.23 1.81 16 10 O -0.37 -5.83 8.60 -35.23 -0.30 -6.13 16 11 C 0.07 1.25 3.49 -24.58 -0.09 1.17 16 12 H 0.07 1.19 7.90 -51.92 -0.41 0.78 16 13 C -0.12 -2.10 6.68 -24.89 -0.17 -2.27 16 14 C 0.12 2.60 4.95 -3.06 -0.02 2.58 16 15 N -0.61 -15.40 3.31 -170.07 -0.56 -15.96 16 16 C -0.33 -9.73 10.42 -15.06 -0.16 -9.88 16 17 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 18 C -0.02 -0.61 5.43 -17.43 -0.09 -0.70 16 19 N -0.92 -29.02 13.70 55.49 0.76 -28.26 16 20 Si 1.07 27.14 24.67 -169.99 -4.19 22.94 16 21 H -0.29 -6.97 6.74 56.52 0.38 -6.59 16 22 H -0.29 -7.09 6.70 56.52 0.38 -6.71 16 23 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 24 C 0.12 2.47 6.97 -2.53 -0.02 2.45 16 25 N -0.54 -7.47 8.99 -8.67 -0.08 -7.55 16 26 H 0.08 0.40 5.50 -51.93 -0.29 0.12 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 31 H 0.08 0.82 7.24 -51.93 -0.38 0.44 16 32 H 0.13 0.99 5.97 -52.48 -0.31 0.67 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.14 1.85 6.99 -52.49 -0.37 1.49 16 35 H 0.07 0.91 8.11 -51.93 -0.42 0.48 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.04 1.03 7.81 -51.93 -0.41 0.62 16 40 H 0.03 0.68 3.69 -51.93 -0.19 0.49 16 41 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 342.82 15.07 5.17 5.17 Total: -1.00 -33.83 342.82 -8.34 -42.17 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.61 Total: -2.51 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -1.87 Total: -3.19 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.52 Total: -58.44 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.30 Total: -6.13 kcal Atomic # 14 Polarization: 27.14 SS G_CDS: -4.19 Total: 22.94 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.83 -8.34 -42.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223512806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.604 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds