Wall clock time and date at job start Tue Mar 31 2020 07:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46505 * 119.99883 * 2 1 4 4 C 1.39004 * 120.00559 * 180.02562 * 2 1 3 5 5 C 1.39137 * 119.70259 * 10.78685 * 4 2 1 6 6 C 1.38304 * 119.09548 * 179.97438 * 5 4 2 7 7 C 1.38880 * 118.50579 * 359.75165 * 6 5 4 8 8 C 1.38030 * 119.32696 * 0.49982 * 7 6 5 9 9 C 1.50700 * 119.56813 * 179.76584 * 8 7 6 10 10 O 1.42905 * 109.47388 * 359.72727 * 9 8 7 11 11 C 1.42895 * 114.00221 * 179.97438 * 10 9 8 12 12 H 1.09008 * 110.88332 * 32.43050 * 11 10 9 13 13 C 1.55157 * 111.00404 * 156.34710 * 11 10 9 14 14 C 1.54333 * 103.02167 * 153.38550 * 13 11 10 15 15 N 1.47029 * 107.26161 * 338.14318 * 14 13 11 16 16 C 1.36938 * 125.64555 * 178.85235 * 15 14 13 17 17 H 1.07995 * 120.00022 * 172.11171 * 16 15 14 18 18 C 1.38819 * 120.00025 * 352.11024 * 16 15 14 19 19 N 1.31618 * 119.99768 * 151.77925 * 18 16 15 20 20 Si 1.86793 * 119.99804 * 331.78041 * 18 16 15 21 21 H 1.48496 * 109.47229 * 85.19468 * 20 18 16 22 22 H 1.48503 * 109.47395 * 325.18897 * 20 18 16 23 23 H 1.48501 * 109.46852 * 205.19157 * 20 18 16 24 24 C 1.47426 * 108.70509 * 358.58294 * 15 14 13 25 25 N 1.31966 * 120.85835 * 359.48601 * 8 7 6 26 26 H 1.09006 * 109.46631 * 185.26924 * 1 2 3 27 27 H 1.08999 * 109.47153 * 305.26656 * 1 2 3 28 28 H 1.09003 * 109.47272 * 65.27192 * 1 2 3 29 29 H 1.09004 * 109.46896 * 269.99889 * 3 2 1 30 30 H 1.08996 * 109.46983 * 29.99810 * 3 2 1 31 31 H 1.09000 * 109.47299 * 150.00363 * 3 2 1 32 32 H 1.08003 * 120.45561 * 359.96535 * 5 4 2 33 33 H 1.07994 * 120.74507 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.33427 * 180.26352 * 7 6 5 35 35 H 1.08993 * 109.47057 * 239.72114 * 9 8 7 36 36 H 1.09004 * 109.46609 * 119.72213 * 9 8 7 37 37 H 1.09005 * 110.72105 * 271.93891 * 13 11 10 38 38 H 1.09001 * 110.71776 * 35.21465 * 13 11 10 39 39 H 1.08996 * 109.99207 * 218.66617 * 14 13 11 40 40 H 1.08999 * 109.78138 * 97.49583 * 14 13 11 41 41 H 0.97005 * 119.99945 * 5.01062 * 19 18 16 42 42 H 1.08995 * 110.36329 * 143.19518 * 24 15 14 43 43 H 1.08994 * 110.36417 * 265.40951 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1601 -1.2037 -0.0005 5 6 1.4768 -2.3944 -0.2273 6 6 2.1809 -3.5847 -0.2256 7 6 3.5510 -3.5441 -0.0016 8 6 4.1637 -2.3275 0.2216 9 6 5.6492 -2.2776 0.4705 10 8 6.1835 -3.6024 0.4314 11 6 7.5932 -3.6675 0.6562 12 1 7.9143 -2.8816 1.3400 13 6 8.0085 -5.0670 1.1820 14 6 9.4752 -5.1914 0.7183 15 7 9.6582 -4.2604 -0.4049 16 6 10.8277 -4.0518 -1.0861 17 1 10.8320 -3.4421 -1.9775 18 6 12.0077 -4.6241 -0.6310 19 7 12.9680 -4.9171 -1.4820 20 14 12.2325 -4.9781 1.1893 21 1 11.6381 -6.2997 1.5136 22 1 11.5571 -3.9225 1.9861 23 1 13.6812 -4.9935 1.5152 24 6 8.3727 -3.5933 -0.6803 25 7 3.4666 -1.2071 0.2143 26 1 -0.3633 -1.0234 0.0944 27 1 -0.3633 0.5933 0.8390 28 1 -0.3634 0.4299 -0.9334 29 1 2.3791 1.5834 -1.0277 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1385 0.5138 32 1 0.4110 -2.3891 -0.4020 33 1 1.6775 -4.5242 -0.3990 34 1 4.1304 -4.4555 0.0018 35 1 5.8389 -1.8381 1.4497 36 1 6.1263 -1.6706 -0.2990 37 1 7.9407 -5.1063 2.2692 38 1 7.3968 -5.8466 0.7279 39 1 9.6774 -6.2113 0.3911 40 1 10.1445 -4.9225 1.5355 41 1 12.8817 -4.6675 -2.4154 42 1 8.5379 -2.5546 -0.9660 43 1 7.8324 -4.1209 -1.4663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223512806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:06 Heat of formation + Delta-G solvation = 23.338918 kcal Electronic energy + Delta-G solvation = -22772.811683 eV Core-core repulsion = 19432.960525 eV Total energy + Delta-G solvation = -3339.851158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.35766 -40.05054 -38.08974 -37.16822 -34.56492 -33.60172 -32.12267 -31.13363 -29.61538 -29.22124 -27.43848 -26.14244 -25.60267 -23.16497 -22.54933 -22.20824 -21.77506 -19.58719 -18.47722 -17.98861 -17.44272 -17.08877 -16.58179 -16.47760 -16.19810 -16.03132 -15.54147 -15.35472 -15.14941 -14.88039 -14.40644 -14.20149 -14.06368 -13.59695 -13.38806 -13.31473 -13.05571 -13.00312 -12.95459 -12.82183 -12.59933 -12.42910 -12.19669 -11.80205 -11.47806 -11.15915 -10.99901 -10.83246 -10.57109 -10.38948 -10.29928 -9.20513 -8.68646 -8.47528 -5.43659 0.25523 0.54203 1.41023 1.53206 1.72557 1.90678 2.38252 2.52379 2.88398 3.00132 3.38763 3.60748 3.70805 3.85191 3.92295 4.03524 4.07726 4.21731 4.28772 4.32167 4.39566 4.42548 4.48554 4.54354 4.57681 4.60588 4.72465 4.76118 4.79926 4.91283 4.93026 4.93813 4.97827 4.99971 5.16236 5.20915 5.42581 5.52910 5.65921 6.00676 6.07104 6.19924 6.38204 6.80268 7.16474 7.44902 8.09731 8.81181 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035116 B = 0.002841 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.167674 B = 9852.965313 C =10130.472735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.628 5.628 3 C 0.098 3.902 4 C 0.384 3.616 5 C -0.241 4.241 6 C -0.034 4.034 7 C -0.219 4.219 8 C 0.157 3.843 9 C 0.115 3.885 10 O -0.370 6.370 11 C 0.089 3.911 12 H 0.086 0.914 13 C -0.108 4.108 14 C 0.106 3.894 15 N -0.629 5.629 16 C -0.328 4.328 17 H 0.042 0.958 18 C -0.076 4.076 19 N -0.949 5.949 20 Si 1.111 2.889 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.305 1.305 24 C 0.112 3.888 25 N -0.564 5.564 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.248 0.752 42 H 0.037 0.963 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.990 7.688 7.744 31.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.343 5.343 3 C -0.045 4.045 4 C 0.149 3.851 5 C -0.266 4.266 6 C -0.060 4.060 7 C -0.242 4.242 8 C 0.020 3.980 9 C 0.037 3.963 10 O -0.288 6.288 11 C 0.030 3.970 12 H 0.104 0.896 13 C -0.146 4.146 14 C -0.018 4.018 15 N -0.358 5.358 16 C -0.456 4.456 17 H 0.060 0.940 18 C -0.271 4.271 19 N -0.592 5.592 20 Si 0.938 3.062 21 H -0.192 1.192 22 H -0.198 1.198 23 H -0.233 1.233 24 C -0.014 4.014 25 N -0.284 5.284 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.179 0.821 33 H 0.181 0.819 34 H 0.157 0.843 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -28.721 7.847 8.886 31.071 hybrid contribution -0.557 0.458 -2.075 2.197 sum -29.277 8.305 6.811 31.185 Atomic orbital electron populations 1.21949 0.76462 1.04229 1.02612 1.46434 1.06276 1.02495 1.79108 1.21560 0.97492 0.84297 1.01171 1.18568 0.87887 0.87448 0.91169 1.21775 1.02558 0.91440 1.10783 1.21717 0.93142 0.99117 0.91977 1.21768 0.96152 0.99131 1.07146 1.20468 0.94590 0.88721 0.94200 1.20934 0.88894 0.84599 1.01829 1.87794 1.21235 1.26739 1.93021 1.23175 0.79564 0.98988 0.95266 0.89631 1.22588 0.93326 0.96128 1.02528 1.21876 0.96645 0.93574 0.89741 1.44732 1.06181 1.46445 1.38434 1.19900 0.86872 1.33044 1.05807 0.93970 1.27131 0.92262 0.98269 1.09405 1.71047 1.39813 1.44253 1.04113 0.83206 0.74108 0.77736 0.71162 1.19190 1.19774 1.23344 1.22137 0.86577 0.95724 0.96982 1.66552 1.07887 1.31390 1.22609 0.89422 0.90827 0.91423 0.93776 0.89574 0.92086 0.82148 0.81942 0.84313 0.90090 0.91665 0.87297 0.89251 0.94959 0.95012 0.94268 0.94482 0.95495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.54 127.77 1.35 2.14 16 2 N -0.63 -10.90 3.39 -753.96 -2.56 -13.46 16 3 C 0.10 1.55 10.59 127.77 1.35 2.91 16 4 C 0.38 8.67 7.33 133.06 0.98 9.64 16 5 C -0.24 -4.35 9.24 22.50 0.21 -4.15 16 6 C -0.03 -0.63 10.17 22.44 0.23 -0.41 16 7 C -0.22 -5.32 9.41 22.37 0.21 -5.11 16 8 C 0.16 4.25 6.78 42.49 0.29 4.54 16 9 C 0.11 3.09 6.36 71.24 0.45 3.55 16 10 O -0.37 -10.91 8.60 -148.98 -1.28 -12.19 16 11 C 0.09 2.89 3.49 31.98 0.11 3.00 16 12 H 0.09 2.59 7.90 -2.38 -0.02 2.58 16 13 C -0.11 -3.41 6.68 31.79 0.21 -3.19 16 14 C 0.11 4.51 4.95 86.73 0.43 4.94 16 15 N -0.63 -31.85 3.31 -691.98 -2.29 -34.13 16 16 C -0.33 -19.77 10.42 84.04 0.88 -18.89 16 17 H 0.04 2.75 8.06 -2.91 -0.02 2.72 16 18 C -0.08 -4.66 5.43 84.86 0.46 -4.20 16 19 N -0.95 -62.09 13.70 21.65 0.30 -61.79 16 20 Si 1.11 54.22 24.67 68.60 1.69 55.91 16 21 H -0.27 -11.78 6.74 99.48 0.67 -11.11 16 22 H -0.27 -12.13 6.70 99.48 0.67 -11.47 16 23 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 24 C 0.11 4.68 6.97 86.85 0.61 5.29 16 25 N -0.56 -15.29 8.99 -181.33 -1.63 -16.92 16 26 H 0.09 0.60 5.50 -2.38 -0.01 0.58 16 27 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.89 8.07 -2.39 -0.02 0.88 16 31 H 0.06 1.22 7.24 -2.39 -0.02 1.20 16 32 H 0.16 1.80 5.97 -2.91 -0.02 1.79 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.14 3.41 6.99 -2.91 -0.02 3.39 16 35 H 0.08 1.99 8.11 -2.39 -0.02 1.97 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 37 H 0.11 2.70 8.14 -2.38 -0.02 2.69 16 38 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.03 1.45 7.81 -2.39 -0.02 1.43 16 40 H 0.03 1.37 3.69 -2.39 -0.01 1.36 16 41 H 0.25 16.34 8.73 -92.70 -0.81 15.53 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -75.58 342.82 2.87 -72.71 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.88 Total: 9.82 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 7.76 Total: 0.06 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -6.18 Total: -126.30 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -1.28 Total: -12.19 kcal Atomic # 14 Polarization: 54.22 SS G_CDS: 1.69 Total: 55.91 kcal Total: -75.58 2.87 -72.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223512806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.044 kcal (2) G-P(sol) polarization free energy of solvation -75.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds