Wall clock time and date at job start Tue Mar 31 2020 07:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46895 * 110.99914 * 2 1 4 4 C 1.46906 * 110.99491 * 123.94719 * 2 1 3 5 5 C 1.50703 * 109.46755 * 170.00353 * 4 2 1 6 6 N 1.31843 * 119.65607 * 270.01891 * 5 4 2 7 7 C 1.31847 * 121.78010 * 179.97438 * 6 5 4 8 8 C 1.38253 * 120.88896 * 0.02562 * 7 6 5 9 9 C 1.38540 * 119.21808 * 359.68121 * 8 7 6 10 10 C 1.38703 * 119.65938 * 90.00131 * 5 4 2 11 11 O 1.35909 * 120.47395 * 0.02562 * 10 5 4 12 12 C 1.42901 * 116.99928 * 174.64479 * 11 10 5 13 13 H 1.08998 * 110.89194 * 327.14119 * 12 11 10 14 14 C 1.55158 * 111.00353 * 203.26252 * 12 11 10 15 15 C 1.54321 * 102.94132 * 206.38792 * 14 12 11 16 16 N 1.47018 * 107.27593 * 22.19160 * 15 14 12 17 17 C 1.36934 * 125.65147 * 181.02536 * 16 15 14 18 18 H 1.08006 * 119.99658 * 173.73533 * 17 16 15 19 19 C 1.38803 * 120.00077 * 353.73015 * 17 16 15 20 20 N 1.31617 * 120.00066 * 7.07146 * 19 17 16 21 21 Si 1.86806 * 120.00022 * 187.06830 * 19 17 16 22 22 H 1.48505 * 109.46749 * 94.98365 * 21 19 17 23 23 H 1.48502 * 109.47087 * 214.97703 * 21 19 17 24 24 H 1.48495 * 109.47345 * 334.98161 * 21 19 17 25 25 C 1.47429 * 108.70145 * 1.28794 * 16 15 14 26 26 H 1.08996 * 109.47672 * 296.05070 * 1 2 3 27 27 H 1.09001 * 109.47110 * 56.05462 * 1 2 3 28 28 H 1.09006 * 109.47532 * 176.04937 * 1 2 3 29 29 H 1.09006 * 109.47243 * 183.95062 * 3 2 1 30 30 H 1.09005 * 109.46965 * 303.94413 * 3 2 1 31 31 H 1.08997 * 109.47515 * 63.94995 * 3 2 1 32 32 H 1.08994 * 109.47247 * 50.00400 * 4 2 1 33 33 H 1.08993 * 109.47371 * 289.99645 * 4 2 1 34 34 H 1.08006 * 119.55955 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.39602 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.81571 * 180.29473 * 9 8 7 37 37 H 1.09000 * 110.72511 * 88.02051 * 14 12 11 38 38 H 1.09002 * 110.86977 * 324.81507 * 14 12 11 39 39 H 1.09004 * 109.88411 * 262.77204 * 15 14 12 40 40 H 1.09010 * 109.88338 * 141.61120 * 15 14 12 41 41 H 0.97007 * 120.00490 * 179.97438 * 20 19 17 42 42 H 1.08995 * 110.36495 * 94.48050 * 25 16 15 43 43 H 1.09000 * 110.36910 * 216.81134 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9953 -0.7659 1.1378 5 6 3.4816 -0.9524 0.9731 6 7 3.9393 -2.0087 0.3305 7 6 5.2309 -2.2131 0.1618 8 6 6.1617 -1.3191 0.6576 9 6 5.7236 -0.1923 1.3340 10 6 4.3539 -0.0108 1.4988 11 8 3.8774 1.0765 2.1606 12 6 4.8403 1.9367 2.7729 13 1 5.7016 1.3684 3.1239 14 6 4.2026 2.7510 3.9295 15 6 5.0853 4.0154 3.9896 16 7 5.7329 4.1585 2.6775 17 6 6.6138 5.1461 2.3258 18 1 7.1139 5.1081 1.3692 19 6 6.8640 6.1961 3.1985 20 7 6.3650 6.1729 4.4162 21 14 7.9090 7.6422 2.6447 22 1 7.0268 8.7297 2.1503 23 1 8.7130 8.1392 3.7900 24 1 8.8176 7.2072 1.5537 25 6 5.2719 3.0663 1.8012 26 1 -0.3634 0.4513 0.9232 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0827 1.3432 -0.0708 30 1 1.5898 1.9162 -0.8526 31 1 1.7042 1.8724 0.9232 32 1 1.5088 -1.7405 1.1758 33 1 1.7974 -0.2246 2.0628 34 1 5.5663 -3.0908 -0.3709 35 1 7.2177 -1.4946 0.5151 36 1 6.4280 0.5254 1.7278 37 1 4.2574 2.1975 4.8669 38 1 3.1702 3.0122 3.6973 39 1 5.8420 3.9027 4.7661 40 1 4.4674 4.8895 4.1954 41 1 6.5402 6.9065 5.0262 42 1 4.4255 3.3952 1.1983 43 1 6.0851 2.7249 1.1607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225277073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:07 Heat of formation + Delta-G solvation = 38.890403 kcal Electronic energy + Delta-G solvation = -23946.293684 eV Core-core repulsion = 20607.116889 eV Total energy + Delta-G solvation = -3339.176795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.78439 -38.55228 -37.14658 -36.31954 -32.48830 -32.36171 -30.79456 -29.30365 -27.55683 -27.45726 -27.16763 -24.75026 -23.33876 -22.89657 -21.18446 -20.42347 -20.14352 -18.09572 -17.24693 -16.56853 -16.26955 -15.87553 -14.98484 -14.92168 -14.71661 -14.62966 -14.39590 -14.00360 -13.49244 -13.17090 -12.95617 -12.81656 -12.39798 -12.32372 -12.16228 -12.02528 -11.83635 -11.53966 -11.46546 -11.41101 -11.04664 -10.87312 -10.46588 -10.40693 -10.14940 -10.00270 -9.79212 -9.61992 -9.48398 -8.68865 -8.40525 -8.14899 -6.96759 -5.83343 -3.17261 1.12578 1.34271 3.26011 3.34737 3.40914 3.42144 3.66381 4.19322 4.35412 4.42153 4.66913 4.85419 5.00002 5.13286 5.17841 5.22406 5.23000 5.33033 5.41549 5.44271 5.50907 5.52904 5.59619 5.68161 5.79095 5.81891 5.82857 6.04690 6.06510 6.15541 6.17185 6.25199 6.31899 6.45051 6.46813 6.65460 6.98581 7.03190 7.40499 7.46219 7.48507 7.70305 8.04976 8.12648 9.09448 9.69455 10.33729 11.28823 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020238 B = 0.004119 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.187670 B = 6796.108334 C = 7401.948668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.540 5.540 3 C 0.027 3.973 4 C 0.114 3.886 5 C 0.101 3.899 6 N -0.436 5.436 7 C 0.050 3.950 8 C -0.131 4.131 9 C -0.167 4.167 10 C 0.100 3.900 11 O -0.295 6.295 12 C 0.062 3.938 13 H 0.080 0.920 14 C -0.134 4.134 15 C 0.178 3.822 16 N -0.601 5.601 17 C -0.234 4.234 18 H 0.079 0.921 19 C -0.003 4.003 20 N -0.919 5.919 21 Si 0.912 3.088 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.122 3.878 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.035 0.965 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.155 0.845 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.254 0.746 42 H 0.031 0.969 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.589 -14.531 -5.138 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.264 5.264 3 C -0.121 4.121 4 C -0.014 4.014 5 C -0.039 4.039 6 N -0.145 5.145 7 C -0.107 4.107 8 C -0.151 4.151 9 C -0.193 4.193 10 C 0.051 3.949 11 O -0.206 6.206 12 C 0.005 3.995 13 H 0.098 0.902 14 C -0.173 4.173 15 C 0.053 3.947 16 N -0.329 5.329 17 C -0.362 4.362 18 H 0.097 0.903 19 C -0.200 4.200 20 N -0.566 5.566 21 Si 0.742 3.258 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.005 4.005 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.172 0.828 35 H 0.153 0.847 36 H 0.162 0.838 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.140 -15.079 -5.754 17.648 hybrid contribution 1.320 1.877 0.832 2.441 sum -5.820 -13.202 -4.922 15.244 Atomic orbital electron populations 1.22359 0.87185 1.02051 1.00569 1.61988 1.07610 1.14441 1.42341 1.22429 1.01180 0.87987 1.00536 1.20767 0.89122 0.99098 0.92431 1.20425 0.95473 0.90140 0.97852 1.67440 1.16694 1.18965 1.11414 1.22539 0.88052 0.99808 1.00331 1.21996 1.01326 0.94229 0.97557 1.21879 0.94912 1.00136 1.02380 1.19970 0.92712 0.88509 0.93749 1.86168 1.36253 1.33080 1.65142 1.23991 0.90833 0.89777 0.94908 0.90186 1.23022 1.00801 0.97889 0.95573 1.21213 0.93640 0.91654 0.88163 1.44323 1.51264 1.28519 1.08823 1.19050 1.16749 0.98744 1.01648 0.90286 1.24830 1.00568 0.98534 0.96067 1.69951 1.49108 1.32400 1.05153 0.86102 0.79419 0.82736 0.77531 1.21462 1.21659 1.20542 1.21937 0.97281 0.88398 0.92839 0.95577 0.91360 0.91435 0.91323 0.91918 0.94640 0.89396 0.92549 0.82810 0.84735 0.83804 0.91413 0.91148 0.93403 0.92903 0.93563 0.95117 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.57 60.06 0.57 0.85 16 2 N -0.54 -7.10 5.01 -252.73 -1.27 -8.37 16 3 C 0.03 0.37 8.33 60.06 0.50 0.87 16 4 C 0.11 1.50 5.11 -4.97 -0.03 1.48 16 5 C 0.10 1.48 5.80 -82.41 -0.48 1.00 16 6 N -0.44 -6.24 10.27 -9.35 -0.10 -6.34 16 7 C 0.05 0.60 11.18 -17.54 -0.20 0.41 16 8 C -0.13 -1.54 10.11 -39.46 -0.40 -1.94 16 9 C -0.17 -2.31 9.04 -39.13 -0.35 -2.67 16 10 C 0.10 1.49 5.42 -39.07 -0.21 1.28 16 11 O -0.30 -4.69 7.30 -19.45 -0.14 -4.83 16 12 C 0.06 1.07 2.82 -24.46 -0.07 1.00 16 13 H 0.08 1.34 6.31 -51.93 -0.33 1.01 16 14 C -0.13 -2.44 6.68 -24.90 -0.17 -2.60 16 15 C 0.18 4.15 5.38 -3.07 -0.02 4.14 16 16 N -0.60 -14.91 3.39 -169.93 -0.58 -15.48 16 17 C -0.23 -6.37 10.26 -15.06 -0.15 -6.52 16 18 H 0.08 2.08 7.84 -52.48 -0.41 1.67 16 19 C 0.00 -0.09 5.48 -17.43 -0.10 -0.18 16 20 N -0.92 -26.27 10.37 55.49 0.58 -25.69 16 21 Si 0.91 21.62 29.56 -169.99 -5.02 16.59 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 C 0.12 2.48 6.87 -2.40 -0.02 2.46 16 26 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 28 H 0.07 0.62 8.12 -51.93 -0.42 0.19 16 29 H 0.07 1.07 5.85 -51.93 -0.30 0.76 16 30 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 31 H 0.03 0.50 7.99 -51.93 -0.42 0.09 16 32 H 0.09 1.06 8.06 -51.93 -0.42 0.64 16 33 H 0.06 0.75 7.50 -51.93 -0.39 0.36 16 34 H 0.15 1.38 8.06 -52.48 -0.42 0.95 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.14 2.00 5.82 -52.49 -0.31 1.69 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.22 7.55 -51.93 -0.39 0.83 16 40 H 0.05 1.37 7.36 -51.92 -0.38 0.99 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.04 0.80 7.82 -51.93 -0.41 0.40 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -30.04 342.73 -9.16 -39.20 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.69 Total: 0.19 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.11 Total: -0.44 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -1.36 Total: -55.88 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.14 Total: -4.83 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.04 -9.16 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225277073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.094 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds