Wall clock time and date at job start Tue Mar 31 2020 07:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46895 * 110.99914 * 2 1 4 4 C 1.46906 * 110.99491 * 123.94719 * 2 1 3 5 5 C 1.50703 * 109.46755 * 170.00353 * 4 2 1 6 6 N 1.31843 * 119.65607 * 270.01891 * 5 4 2 7 7 C 1.31847 * 121.78010 * 179.97438 * 6 5 4 8 8 C 1.38253 * 120.88896 * 0.02562 * 7 6 5 9 9 C 1.38540 * 119.21808 * 359.68121 * 8 7 6 10 10 C 1.38703 * 119.65938 * 90.00131 * 5 4 2 11 11 O 1.35909 * 120.47395 * 0.02562 * 10 5 4 12 12 C 1.42901 * 116.99928 * 174.64479 * 11 10 5 13 13 H 1.08998 * 110.89194 * 327.14119 * 12 11 10 14 14 C 1.55158 * 111.00353 * 203.26252 * 12 11 10 15 15 C 1.54321 * 102.94132 * 206.38792 * 14 12 11 16 16 N 1.47018 * 107.27593 * 22.19160 * 15 14 12 17 17 C 1.36934 * 125.65147 * 181.02536 * 16 15 14 18 18 H 1.08006 * 119.99658 * 173.73533 * 17 16 15 19 19 C 1.38803 * 120.00077 * 353.73015 * 17 16 15 20 20 N 1.31617 * 120.00066 * 7.07146 * 19 17 16 21 21 Si 1.86806 * 120.00022 * 187.06830 * 19 17 16 22 22 H 1.48505 * 109.46749 * 94.98365 * 21 19 17 23 23 H 1.48502 * 109.47087 * 214.97703 * 21 19 17 24 24 H 1.48495 * 109.47345 * 334.98161 * 21 19 17 25 25 C 1.47429 * 108.70145 * 1.28794 * 16 15 14 26 26 H 1.08996 * 109.47672 * 296.05070 * 1 2 3 27 27 H 1.09001 * 109.47110 * 56.05462 * 1 2 3 28 28 H 1.09006 * 109.47532 * 176.04937 * 1 2 3 29 29 H 1.09006 * 109.47243 * 183.95062 * 3 2 1 30 30 H 1.09005 * 109.46965 * 303.94413 * 3 2 1 31 31 H 1.08997 * 109.47515 * 63.94995 * 3 2 1 32 32 H 1.08994 * 109.47247 * 50.00400 * 4 2 1 33 33 H 1.08993 * 109.47371 * 289.99645 * 4 2 1 34 34 H 1.08006 * 119.55955 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.39602 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.81571 * 180.29473 * 9 8 7 37 37 H 1.09000 * 110.72511 * 88.02051 * 14 12 11 38 38 H 1.09002 * 110.86977 * 324.81507 * 14 12 11 39 39 H 1.09004 * 109.88411 * 262.77204 * 15 14 12 40 40 H 1.09010 * 109.88338 * 141.61120 * 15 14 12 41 41 H 0.97007 * 120.00490 * 179.97438 * 20 19 17 42 42 H 1.08995 * 110.36495 * 94.48050 * 25 16 15 43 43 H 1.09000 * 110.36910 * 216.81134 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9953 -0.7659 1.1378 5 6 3.4816 -0.9524 0.9731 6 7 3.9393 -2.0087 0.3305 7 6 5.2309 -2.2131 0.1618 8 6 6.1617 -1.3191 0.6576 9 6 5.7236 -0.1923 1.3340 10 6 4.3539 -0.0108 1.4988 11 8 3.8774 1.0765 2.1606 12 6 4.8403 1.9367 2.7729 13 1 5.7016 1.3684 3.1239 14 6 4.2026 2.7510 3.9295 15 6 5.0853 4.0154 3.9896 16 7 5.7329 4.1585 2.6775 17 6 6.6138 5.1461 2.3258 18 1 7.1139 5.1081 1.3692 19 6 6.8640 6.1961 3.1985 20 7 6.3650 6.1729 4.4162 21 14 7.9090 7.6422 2.6447 22 1 7.0268 8.7297 2.1503 23 1 8.7130 8.1392 3.7900 24 1 8.8176 7.2072 1.5537 25 6 5.2719 3.0663 1.8012 26 1 -0.3634 0.4513 0.9232 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0827 1.3432 -0.0708 30 1 1.5898 1.9162 -0.8526 31 1 1.7042 1.8724 0.9232 32 1 1.5088 -1.7405 1.1758 33 1 1.7974 -0.2246 2.0628 34 1 5.5663 -3.0908 -0.3709 35 1 7.2177 -1.4946 0.5151 36 1 6.4280 0.5254 1.7278 37 1 4.2574 2.1975 4.8669 38 1 3.1702 3.0122 3.6973 39 1 5.8420 3.9027 4.7661 40 1 4.4674 4.8895 4.1954 41 1 6.5402 6.9065 5.0262 42 1 4.4255 3.3952 1.1983 43 1 6.0851 2.7249 1.1607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225277073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:06 Heat of formation + Delta-G solvation = 19.476399 kcal Electronic energy + Delta-G solvation = -23947.135538 eV Core-core repulsion = 20607.116889 eV Total energy + Delta-G solvation = -3340.018649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.88860 -39.88243 -38.14799 -37.88256 -34.36506 -33.39315 -32.01016 -31.02834 -29.17591 -28.48774 -28.13179 -26.60347 -24.52084 -23.95046 -22.28733 -22.12432 -21.62711 -19.29657 -19.05392 -17.82070 -17.29692 -17.00244 -16.76409 -16.24459 -15.96670 -15.68323 -15.61243 -15.49463 -14.82004 -14.57169 -14.25098 -14.01573 -13.93843 -13.76303 -13.35774 -13.25531 -12.96276 -12.95031 -12.75899 -12.53554 -12.52941 -12.48592 -12.21071 -12.04642 -11.93293 -11.69488 -11.53645 -10.74329 -10.65564 -10.51388 -9.45160 -9.20851 -8.97666 -7.91636 -5.27634 0.12276 0.29420 1.45393 1.47218 1.55841 1.99284 2.47558 2.67564 3.21303 3.27881 3.37698 3.55500 3.59370 3.70888 3.85496 3.90399 3.99657 4.15461 4.20175 4.30545 4.38125 4.50262 4.52964 4.56004 4.61129 4.72280 4.76736 4.80236 4.82721 4.90339 4.93919 5.03273 5.05437 5.13600 5.17031 5.39836 5.54695 5.56836 5.66905 5.98517 6.07373 6.11487 6.28187 7.03321 7.03701 7.68408 8.32236 9.19265 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020238 B = 0.004119 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.187670 B = 6796.108334 C = 7401.948668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.550 5.550 3 C 0.035 3.965 4 C 0.116 3.884 5 C 0.092 3.908 6 N -0.454 5.454 7 C 0.053 3.947 8 C -0.124 4.124 9 C -0.176 4.176 10 C 0.078 3.922 11 O -0.296 6.296 12 C 0.083 3.917 13 H 0.090 0.910 14 C -0.121 4.121 15 C 0.186 3.814 16 N -0.622 5.622 17 C -0.249 4.249 18 H 0.083 0.917 19 C -0.057 4.057 20 N -0.947 5.947 21 Si 0.977 3.023 22 H -0.288 1.288 23 H -0.293 1.293 24 H -0.267 1.267 25 C 0.123 3.877 26 H 0.029 0.971 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.188 0.812 35 H 0.167 0.833 36 H 0.141 0.859 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.020 0.980 40 H 0.018 0.982 41 H 0.249 0.751 42 H 0.025 0.975 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 -16.274 -6.367 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.274 5.274 3 C -0.114 4.114 4 C -0.012 4.012 5 C -0.048 4.048 6 N -0.163 5.163 7 C -0.104 4.104 8 C -0.144 4.144 9 C -0.203 4.203 10 C 0.030 3.970 11 O -0.207 6.207 12 C 0.026 3.974 13 H 0.107 0.893 14 C -0.159 4.159 15 C 0.061 3.939 16 N -0.349 5.349 17 C -0.377 4.377 18 H 0.101 0.899 19 C -0.251 4.251 20 N -0.595 5.595 21 Si 0.805 3.195 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.191 1.191 25 C -0.003 4.003 26 H 0.047 0.953 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.205 0.795 35 H 0.185 0.815 36 H 0.159 0.841 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.923 -16.853 -7.010 19.522 hybrid contribution 1.256 2.302 1.118 2.851 sum -5.667 -14.551 -5.891 16.690 Atomic orbital electron populations 1.22433 0.85445 1.03173 1.01100 1.62007 1.09252 1.13756 1.42395 1.22303 0.99965 0.88673 1.00427 1.20771 0.88775 0.99489 0.92214 1.20599 0.96026 0.90206 0.97927 1.67502 1.18004 1.18952 1.11890 1.23168 0.87351 1.00577 0.99318 1.22347 1.03042 0.92962 0.96048 1.22017 0.94395 1.00997 1.02849 1.20114 0.93513 0.88539 0.94868 1.86148 1.35468 1.33470 1.65643 1.23577 0.91226 0.89233 0.93401 0.89270 1.22829 0.99899 0.95810 0.97358 1.20943 0.92938 0.92885 0.87114 1.44581 1.51031 1.29268 1.10056 1.19419 1.16996 0.99563 1.01725 0.89948 1.25640 1.02286 1.00983 0.96207 1.70152 1.50529 1.32794 1.06046 0.85090 0.77918 0.79321 0.77182 1.21490 1.21912 1.19150 1.22010 0.97070 0.88260 0.92988 0.95283 0.90514 0.90085 0.93301 0.91013 0.95590 0.88392 0.93086 0.79484 0.81544 0.84130 0.88915 0.90474 0.96209 0.96383 0.94126 0.95694 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.57 127.69 1.22 1.72 16 2 N -0.55 -13.80 5.01 -953.49 -4.78 -18.58 16 3 C 0.03 0.94 8.33 127.69 1.06 2.00 16 4 C 0.12 2.91 5.11 85.56 0.44 3.35 16 5 C 0.09 2.56 5.80 42.67 0.25 2.80 16 6 N -0.45 -12.03 10.27 -183.50 -1.88 -13.92 16 7 C 0.05 1.12 11.18 84.69 0.95 2.06 16 8 C -0.12 -2.55 10.11 22.35 0.23 -2.33 16 9 C -0.18 -4.59 9.04 22.56 0.20 -4.38 16 10 C 0.08 2.25 5.42 22.60 0.12 2.37 16 11 O -0.30 -9.18 7.30 -92.53 -0.68 -9.86 16 12 C 0.08 2.81 2.82 32.07 0.09 2.90 16 13 H 0.09 2.88 6.31 -2.39 -0.02 2.87 16 14 C -0.12 -4.34 6.68 31.78 0.21 -4.13 16 15 C 0.19 8.94 5.38 86.73 0.47 9.41 16 16 N -0.62 -31.37 3.39 -691.53 -2.35 -33.72 16 17 C -0.25 -13.70 10.26 84.03 0.86 -12.84 16 18 H 0.08 4.36 7.84 -2.91 -0.02 4.33 16 19 C -0.06 -3.21 5.48 84.86 0.47 -2.74 16 20 N -0.95 -55.72 10.37 21.65 0.22 -55.49 16 21 Si 0.98 44.88 29.56 68.60 2.03 46.91 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 C 0.12 4.98 6.87 86.93 0.60 5.57 16 26 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 28 H 0.08 1.31 8.12 -2.38 -0.02 1.29 16 29 H 0.05 1.51 5.85 -2.38 -0.01 1.49 16 30 H 0.07 1.76 8.12 -2.38 -0.02 1.74 16 31 H 0.03 0.73 7.99 -2.39 -0.02 0.71 16 32 H 0.10 2.21 8.06 -2.39 -0.02 2.20 16 33 H 0.05 1.32 7.50 -2.39 -0.02 1.30 16 34 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.14 3.71 5.82 -2.91 -0.02 3.69 16 37 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.02 1.04 7.55 -2.38 -0.02 1.03 16 40 H 0.02 0.98 7.36 -2.38 -0.02 0.96 16 41 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.05 1.81 7.82 -2.39 -0.02 1.79 16 Total: -1.00 -65.60 342.73 0.72 -64.88 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.99 Total: 14.01 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 7.16 Total: 5.77 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -8.78 Total: -121.71 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.68 Total: -9.86 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.60 0.72 -64.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225277073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.355 kcal (2) G-P(sol) polarization free energy of solvation -65.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds