Wall clock time and date at job start Tue Mar 31 2020 07:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 5 5 C 1.50696 * 109.47351 * 293.95574 * 4 2 1 6 6 N 1.31845 * 119.66027 * 89.99760 * 5 4 2 7 7 C 1.31840 * 121.77941 * 179.97438 * 6 5 4 8 8 C 1.38252 * 120.89434 * 359.97438 * 7 6 5 9 9 C 1.38533 * 119.21567 * 0.02562 * 8 7 6 10 10 C 1.38708 * 119.65964 * 269.73040 * 5 4 2 11 11 O 1.35915 * 120.46946 * 359.97438 * 10 5 4 12 12 C 1.42904 * 116.99530 * 180.02562 * 11 10 5 13 13 H 1.08989 * 110.64727 * 31.68605 * 12 11 10 14 14 C 1.55153 * 110.71843 * 155.02706 * 12 11 10 15 15 C 1.54911 * 101.58389 * 153.86080 * 14 12 11 16 16 N 1.47428 * 104.82954 * 322.98842 * 15 14 12 17 17 C 1.36933 * 125.64653 * 204.15894 * 16 15 14 18 18 H 1.07997 * 120.00370 * 179.97438 * 17 16 15 19 19 C 1.38815 * 120.00161 * 359.96637 * 17 16 15 20 20 N 1.31615 * 120.00145 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00125 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46788 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46937 * 119.99412 * 21 19 17 24 24 H 1.48497 * 109.47091 * 239.99386 * 21 19 17 25 25 C 1.47017 * 108.70275 * 24.12941 * 16 15 14 26 26 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 27 27 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 28 28 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 29 29 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 30 30 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 31 31 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 32 32 H 1.08997 * 109.46995 * 53.95554 * 4 2 1 33 33 H 1.09001 * 109.46848 * 173.95560 * 4 2 1 34 34 H 1.08008 * 119.55424 * 180.02562 * 7 6 5 35 35 H 1.07993 * 120.39344 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.81486 * 179.97438 * 9 8 7 37 37 H 1.09004 * 111.00365 * 271.93292 * 14 12 11 38 38 H 1.09003 * 111.00850 * 35.78913 * 14 12 11 39 39 H 1.08998 * 110.36841 * 204.14689 * 15 14 12 40 40 H 1.09004 * 110.45807 * 81.87386 * 15 14 12 41 41 H 0.96996 * 120.00686 * 180.02562 * 20 19 17 42 42 H 1.09008 * 109.87977 * 239.52111 * 25 16 15 43 43 H 1.09001 * 110.01262 * 118.43045 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9954 -0.7660 -1.1377 5 6 1.6369 -2.2204 -0.9730 6 7 0.5041 -2.6737 -1.4727 7 6 0.1493 -3.9379 -1.3535 8 6 0.9597 -4.8435 -0.6943 9 6 2.1591 -4.4092 -0.1540 10 6 2.5046 -3.0696 -0.3021 11 8 3.6740 -2.5989 0.2061 12 6 4.5119 -3.5383 0.8826 13 1 4.4048 -4.5318 0.4475 14 6 5.9928 -3.0766 0.8487 15 6 6.5615 -3.7627 2.1158 16 7 5.4722 -3.6881 3.1065 17 6 5.6265 -3.7255 4.4666 18 1 4.7615 -3.6633 5.1101 19 6 6.8949 -3.8436 5.0183 20 7 7.9491 -3.9202 4.2341 21 14 7.1054 -3.8940 6.8737 22 1 5.7752 -3.7909 7.5257 23 1 7.7507 -5.1732 7.2641 24 1 7.9577 -2.7574 7.3062 25 6 4.1930 -3.5661 2.3923 26 1 -0.3634 -1.0252 0.0708 27 1 -0.3633 0.4513 -0.9233 28 1 -0.3633 0.5740 0.8525 29 1 1.5899 1.9163 0.8525 30 1 3.0829 1.3431 0.0709 31 1 1.7045 1.8723 -0.9233 32 1 1.5611 -0.3872 -2.0628 33 1 3.0797 -0.6611 -1.1757 34 1 -0.7868 -4.2707 -1.7772 35 1 0.6613 -5.8773 -0.6018 36 1 2.8118 -5.0945 0.3665 37 1 6.4941 -3.4375 -0.0494 38 1 6.0658 -1.9918 0.9258 39 1 7.4394 -3.2263 2.4761 40 1 6.8128 -4.8024 1.9059 41 1 8.8354 -4.0031 4.6195 42 1 3.6930 -2.6420 2.6827 43 1 3.5553 -4.4201 2.6207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225277074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:11 Heat of formation + Delta-G solvation = 42.381302 kcal Electronic energy + Delta-G solvation = -23715.606132 eV Core-core repulsion = 20376.580714 eV Total energy + Delta-G solvation = -3339.025418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.72082 -38.56988 -37.11300 -36.25345 -32.47026 -32.32840 -30.79581 -29.24878 -27.56287 -27.39627 -27.16243 -24.72280 -23.18970 -23.00337 -21.29143 -20.27607 -20.11717 -18.00846 -17.17397 -16.59178 -16.28597 -15.75329 -15.12908 -14.94108 -14.70908 -14.64351 -14.27213 -13.98083 -13.56447 -12.99343 -12.91246 -12.76645 -12.48132 -12.34375 -12.17236 -11.83226 -11.68463 -11.63092 -11.53302 -11.28928 -11.02919 -10.82580 -10.55745 -10.36907 -10.08938 -9.86092 -9.65429 -9.61760 -9.53382 -8.70665 -8.35891 -8.13410 -6.90554 -5.70638 -3.12641 1.11901 1.35286 3.34775 3.38539 3.44390 3.46831 3.65194 4.15908 4.41202 4.46121 4.63631 4.84218 4.97446 5.17586 5.22006 5.24536 5.27144 5.31821 5.41688 5.42915 5.46337 5.55718 5.64683 5.66035 5.69570 5.83378 5.90178 5.99288 6.09519 6.17948 6.19758 6.36506 6.44193 6.48039 6.57305 6.72280 6.99513 7.03671 7.39471 7.55205 7.58264 7.77938 8.00847 8.28806 9.16279 9.76545 10.39469 11.33917 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.004048 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.319830 B = 6914.733460 C = 7486.301710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.538 5.538 3 C 0.028 3.972 4 C 0.117 3.883 5 C 0.096 3.904 6 N -0.447 5.447 7 C 0.045 3.955 8 C -0.128 4.128 9 C -0.172 4.172 10 C 0.117 3.883 11 O -0.286 6.286 12 C 0.065 3.935 13 H 0.076 0.924 14 C -0.135 4.135 15 C 0.153 3.847 16 N -0.600 5.600 17 C -0.222 4.222 18 H 0.079 0.921 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.916 3.084 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.121 3.879 26 H 0.070 0.930 27 H 0.024 0.976 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.154 0.846 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.016 0.984 41 H 0.253 0.747 42 H 0.039 0.961 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.379 3.224 -12.677 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.262 5.262 3 C -0.120 4.120 4 C -0.011 4.011 5 C -0.044 4.044 6 N -0.156 5.156 7 C -0.112 4.112 8 C -0.149 4.149 9 C -0.198 4.198 10 C 0.068 3.932 11 O -0.197 6.197 12 C 0.009 3.991 13 H 0.094 0.906 14 C -0.173 4.173 15 C 0.028 3.972 16 N -0.327 5.327 17 C -0.350 4.350 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.746 3.254 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.216 1.216 25 C -0.005 4.005 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.171 0.829 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.132 0.868 40 H 0.034 0.966 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -12.506 3.764 -12.511 18.086 hybrid contribution 0.275 -0.751 0.751 1.097 sum -12.231 3.013 -11.760 17.233 Atomic orbital electron populations 1.22374 0.87204 1.02594 0.99817 1.61884 1.08121 1.13662 1.42527 1.22365 1.01219 0.88254 1.00192 1.20770 1.00750 0.87638 0.91983 1.20386 0.90129 0.95745 0.98134 1.67448 1.14751 1.16460 1.16980 1.22468 1.00258 0.88651 0.99804 1.21957 0.94262 1.01173 0.97460 1.21855 0.99045 0.95359 1.03546 1.19911 0.87833 0.92400 0.93104 1.86237 1.27315 1.38264 1.67887 1.23762 0.90867 0.91438 0.93025 0.90615 1.23202 0.91135 1.02208 1.00793 1.21995 0.93903 0.97401 0.83922 1.44362 0.99830 1.86468 1.02072 1.19135 0.93002 1.42680 0.80200 0.90314 1.24785 0.95306 1.02172 0.98260 1.69758 0.97776 1.57248 1.32419 0.85973 0.77646 0.77278 0.84464 1.20472 1.21706 1.21632 1.21645 0.90679 0.98926 0.89271 0.91114 0.95697 0.91892 0.91295 0.90952 0.95880 0.93352 0.88772 0.82911 0.84795 0.83895 0.91579 0.90645 0.86843 0.96599 0.93658 0.94326 0.95872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.29 60.07 0.56 0.91 16 2 N -0.54 -7.31 5.01 -252.71 -1.27 -8.57 16 3 C 0.03 0.31 9.57 60.06 0.57 0.88 16 4 C 0.12 1.57 5.04 -4.97 -0.03 1.55 16 5 C 0.10 1.41 5.56 -82.41 -0.46 0.95 16 6 N -0.45 -6.15 9.21 -9.35 -0.09 -6.24 16 7 C 0.05 0.53 11.18 -17.54 -0.20 0.33 16 8 C -0.13 -1.48 10.11 -39.47 -0.40 -1.88 16 9 C -0.17 -2.39 9.12 -39.14 -0.36 -2.74 16 10 C 0.12 1.82 6.67 -39.07 -0.26 1.56 16 11 O -0.29 -4.92 8.91 -19.47 -0.17 -5.09 16 12 C 0.07 1.18 2.84 -24.90 -0.07 1.11 16 13 H 0.08 1.24 5.95 -51.94 -0.31 0.93 16 14 C -0.13 -2.55 6.81 -24.58 -0.17 -2.72 16 15 C 0.15 3.63 5.89 -2.53 -0.01 3.62 16 16 N -0.60 -15.39 3.39 -170.07 -0.58 -15.97 16 17 C -0.22 -6.20 10.27 -15.06 -0.15 -6.35 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -26.52 10.09 55.49 0.56 -25.96 16 21 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.12 2.61 7.02 -3.06 -0.02 2.58 16 26 H 0.07 0.96 6.57 -51.93 -0.34 0.62 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.70 8.12 -51.93 -0.42 0.27 16 29 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 30 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 31 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.61 8.12 -51.93 -0.42 0.18 16 33 H 0.09 1.28 7.43 -51.93 -0.39 0.89 16 34 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.14 1.93 6.01 -52.49 -0.32 1.62 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.11 3.03 5.87 -51.93 -0.31 2.73 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.04 0.88 8.06 -51.92 -0.42 0.46 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -30.60 345.81 -9.13 -39.73 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.69 Total: 0.52 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.09 Total: -0.56 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -1.37 Total: -56.74 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.17 Total: -5.09 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.60 -9.13 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225277074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.115 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds