Wall clock time and date at job start Tue Mar 31 2020 07:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 5 5 C 1.50696 * 109.47351 * 293.95574 * 4 2 1 6 6 N 1.31845 * 119.66027 * 89.99760 * 5 4 2 7 7 C 1.31840 * 121.77941 * 179.97438 * 6 5 4 8 8 C 1.38252 * 120.89434 * 359.97438 * 7 6 5 9 9 C 1.38533 * 119.21567 * 0.02562 * 8 7 6 10 10 C 1.38708 * 119.65964 * 269.73040 * 5 4 2 11 11 O 1.35915 * 120.46946 * 359.97438 * 10 5 4 12 12 C 1.42904 * 116.99530 * 180.02562 * 11 10 5 13 13 H 1.08989 * 110.64727 * 31.68605 * 12 11 10 14 14 C 1.55153 * 110.71843 * 155.02706 * 12 11 10 15 15 C 1.54911 * 101.58389 * 153.86080 * 14 12 11 16 16 N 1.47428 * 104.82954 * 322.98842 * 15 14 12 17 17 C 1.36933 * 125.64653 * 204.15894 * 16 15 14 18 18 H 1.07997 * 120.00370 * 179.97438 * 17 16 15 19 19 C 1.38815 * 120.00161 * 359.96637 * 17 16 15 20 20 N 1.31615 * 120.00145 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00125 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46788 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46937 * 119.99412 * 21 19 17 24 24 H 1.48497 * 109.47091 * 239.99386 * 21 19 17 25 25 C 1.47017 * 108.70275 * 24.12941 * 16 15 14 26 26 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 27 27 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 28 28 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 29 29 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 30 30 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 31 31 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 32 32 H 1.08997 * 109.46995 * 53.95554 * 4 2 1 33 33 H 1.09001 * 109.46848 * 173.95560 * 4 2 1 34 34 H 1.08008 * 119.55424 * 180.02562 * 7 6 5 35 35 H 1.07993 * 120.39344 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.81486 * 179.97438 * 9 8 7 37 37 H 1.09004 * 111.00365 * 271.93292 * 14 12 11 38 38 H 1.09003 * 111.00850 * 35.78913 * 14 12 11 39 39 H 1.08998 * 110.36841 * 204.14689 * 15 14 12 40 40 H 1.09004 * 110.45807 * 81.87386 * 15 14 12 41 41 H 0.96996 * 120.00686 * 180.02562 * 20 19 17 42 42 H 1.09008 * 109.87977 * 239.52111 * 25 16 15 43 43 H 1.09001 * 110.01262 * 118.43045 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9954 -0.7660 -1.1377 5 6 1.6369 -2.2204 -0.9730 6 7 0.5041 -2.6737 -1.4727 7 6 0.1493 -3.9379 -1.3535 8 6 0.9597 -4.8435 -0.6943 9 6 2.1591 -4.4092 -0.1540 10 6 2.5046 -3.0696 -0.3021 11 8 3.6740 -2.5989 0.2061 12 6 4.5119 -3.5383 0.8826 13 1 4.4048 -4.5318 0.4475 14 6 5.9928 -3.0766 0.8487 15 6 6.5615 -3.7627 2.1158 16 7 5.4722 -3.6881 3.1065 17 6 5.6265 -3.7255 4.4666 18 1 4.7615 -3.6633 5.1101 19 6 6.8949 -3.8436 5.0183 20 7 7.9491 -3.9202 4.2341 21 14 7.1054 -3.8940 6.8737 22 1 5.7752 -3.7909 7.5257 23 1 7.7507 -5.1732 7.2641 24 1 7.9577 -2.7574 7.3062 25 6 4.1930 -3.5661 2.3923 26 1 -0.3634 -1.0252 0.0708 27 1 -0.3633 0.4513 -0.9233 28 1 -0.3633 0.5740 0.8525 29 1 1.5899 1.9163 0.8525 30 1 3.0829 1.3431 0.0709 31 1 1.7045 1.8723 -0.9233 32 1 1.5611 -0.3872 -2.0628 33 1 3.0797 -0.6611 -1.1757 34 1 -0.7868 -4.2707 -1.7772 35 1 0.6613 -5.8773 -0.6018 36 1 2.8118 -5.0945 0.3665 37 1 6.4941 -3.4375 -0.0494 38 1 6.0658 -1.9918 0.9258 39 1 7.4394 -3.2263 2.4761 40 1 6.8128 -4.8024 1.9059 41 1 8.8354 -4.0031 4.6195 42 1 3.6930 -2.6420 2.6827 43 1 3.5553 -4.4201 2.6207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225277074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:10 Heat of formation + Delta-G solvation = 22.600949 kcal Electronic energy + Delta-G solvation = -23716.463872 eV Core-core repulsion = 20376.580714 eV Total energy + Delta-G solvation = -3339.883159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82470 -39.91769 -38.09333 -37.87751 -34.34963 -33.37320 -32.01608 -31.01973 -29.12862 -28.45884 -28.13775 -26.61004 -24.39350 -24.04144 -22.39161 -22.08699 -21.54359 -19.22990 -19.04081 -17.82359 -17.33114 -16.92223 -16.76435 -16.37178 -15.96877 -15.65051 -15.57554 -15.40290 -14.92756 -14.40646 -14.33182 -13.99296 -13.86643 -13.64070 -13.31866 -13.21660 -13.00791 -12.94962 -12.71955 -12.60334 -12.53997 -12.41670 -12.23951 -12.01086 -11.87698 -11.74667 -11.40824 -10.78740 -10.64776 -10.55228 -9.38094 -9.19830 -8.94892 -7.81184 -5.26337 0.12340 0.31131 1.47063 1.47932 1.58337 2.07506 2.48845 2.67043 3.19048 3.30012 3.43870 3.56040 3.65685 3.66911 3.85796 3.92405 4.01372 4.18195 4.22113 4.29383 4.39950 4.48430 4.52878 4.57519 4.66163 4.70620 4.74978 4.82609 4.86107 4.94615 4.96152 5.02372 5.03164 5.15330 5.17780 5.42681 5.55137 5.58759 5.74314 6.02531 6.10418 6.25356 6.34169 7.00141 7.06882 7.71681 8.34333 9.21199 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.004048 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.319830 B = 6914.733460 C = 7486.301710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.561 5.561 3 C 0.029 3.971 4 C 0.120 3.880 5 C 0.086 3.914 6 N -0.459 5.459 7 C 0.051 3.949 8 C -0.121 4.121 9 C -0.179 4.179 10 C 0.087 3.913 11 O -0.296 6.296 12 C 0.085 3.915 13 H 0.097 0.903 14 C -0.121 4.121 15 C 0.155 3.845 16 N -0.621 5.621 17 C -0.243 4.243 18 H 0.077 0.923 19 C -0.060 4.060 20 N -0.946 5.946 21 Si 0.981 3.019 22 H -0.270 1.270 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.122 3.878 26 H 0.055 0.945 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.189 0.811 35 H 0.169 0.831 36 H 0.144 0.856 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.002 0.998 41 H 0.250 0.750 42 H 0.021 0.979 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.122 2.682 -13.547 19.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.286 5.286 3 C -0.119 4.119 4 C -0.008 4.008 5 C -0.053 4.053 6 N -0.169 5.169 7 C -0.107 4.107 8 C -0.141 4.141 9 C -0.206 4.206 10 C 0.038 3.962 11 O -0.207 6.207 12 C 0.028 3.972 13 H 0.115 0.885 14 C -0.159 4.159 15 C 0.030 3.970 16 N -0.349 5.349 17 C -0.372 4.372 18 H 0.095 0.905 19 C -0.253 4.253 20 N -0.596 5.596 21 Si 0.809 3.191 22 H -0.194 1.194 23 H -0.215 1.215 24 H -0.216 1.216 25 C -0.004 4.004 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.206 0.794 35 H 0.186 0.814 36 H 0.162 0.838 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.020 0.980 41 H 0.060 0.940 42 H 0.039 0.961 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -14.276 3.239 -13.402 19.847 hybrid contribution 0.683 -0.615 0.973 1.338 sum -13.593 2.623 -12.429 18.605 Atomic orbital electron populations 1.22307 0.86547 1.01863 1.00654 1.61880 1.08928 1.14899 1.42878 1.22374 1.00827 0.87407 1.01267 1.20720 1.00331 0.87476 0.92320 1.20533 0.90353 0.96134 0.98257 1.67521 1.14338 1.17668 1.17336 1.23145 1.01185 0.87885 0.98471 1.22337 0.92937 1.02863 0.95942 1.22028 1.00122 0.94691 1.03732 1.20132 0.87719 0.93574 0.94732 1.86200 1.28234 1.38040 1.68265 1.23424 0.90296 0.92671 0.90828 0.88520 1.22999 0.91997 1.01387 0.99547 1.21775 0.92977 0.96530 0.85677 1.44634 1.01820 1.86417 1.01997 1.19446 0.93241 1.42793 0.81701 0.90474 1.25601 0.95028 1.02151 1.02524 1.69993 0.97883 1.57783 1.33919 0.84977 0.77755 0.76939 0.79435 1.19407 1.21543 1.21612 1.21713 0.89037 0.98070 0.91602 0.92575 0.94788 0.91040 0.90607 0.91559 0.94376 0.92636 0.89546 0.79431 0.81352 0.83792 0.88375 0.91242 0.90066 0.98015 0.94038 0.96064 0.95320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.29 127.69 1.19 1.99 16 2 N -0.56 -14.88 5.01 -953.45 -4.78 -19.66 16 3 C 0.03 0.62 9.57 127.69 1.22 1.84 16 4 C 0.12 3.16 5.04 85.55 0.43 3.59 16 5 C 0.09 2.44 5.56 42.67 0.24 2.67 16 6 N -0.46 -11.71 9.21 -183.50 -1.69 -13.40 16 7 C 0.05 1.02 11.18 84.69 0.95 1.96 16 8 C -0.12 -2.39 10.11 22.34 0.23 -2.17 16 9 C -0.18 -4.63 9.12 22.56 0.21 -4.42 16 10 C 0.09 2.62 6.67 22.60 0.15 2.77 16 11 O -0.30 -10.04 8.91 -92.59 -0.83 -10.86 16 12 C 0.08 2.99 2.84 31.78 0.09 3.08 16 13 H 0.10 3.02 5.95 -2.39 -0.01 3.00 16 14 C -0.12 -4.53 6.81 31.99 0.22 -4.31 16 15 C 0.16 7.55 5.89 86.86 0.51 8.06 16 16 N -0.62 -32.51 3.39 -691.97 -2.35 -34.86 16 17 C -0.24 -13.82 10.27 84.03 0.86 -12.96 16 18 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 19 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 20 N -0.95 -55.62 10.09 21.65 0.22 -55.40 16 21 Si 0.98 45.55 29.55 68.60 2.03 47.58 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 C 0.12 5.27 7.02 86.73 0.61 5.88 16 26 H 0.06 1.46 6.57 -2.39 -0.02 1.44 16 27 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 1.50 8.12 -2.38 -0.02 1.48 16 29 H 0.08 1.49 8.12 -2.38 -0.02 1.47 16 30 H 0.07 1.48 8.12 -2.39 -0.02 1.46 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 33 H 0.09 2.35 7.43 -2.39 -0.02 2.34 16 34 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.14 3.62 6.01 -2.91 -0.02 3.60 16 37 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 38 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.08 4.50 5.87 -2.39 -0.01 4.48 16 40 H 0.00 0.09 8.14 -2.38 -0.02 0.08 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.02 0.99 8.06 -2.38 -0.02 0.97 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -66.96 345.81 0.96 -66.01 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.99 Total: 15.55 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 7.36 Total: 5.05 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -8.60 Total: -123.32 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.83 Total: -10.86 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -66.96 0.96 -66.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225277074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.610 kcal (2) G-P(sol) polarization free energy of solvation -66.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds