Wall clock time and date at job start Tue Mar 31 2020 07:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99853 * 2 1 4 4 C 1.46891 * 111.00122 * 123.95732 * 2 1 3 5 5 C 1.50704 * 109.47461 * 66.04861 * 4 2 1 6 6 N 1.31842 * 119.65707 * 89.99338 * 5 4 2 7 7 C 1.31845 * 121.77739 * 180.02562 * 6 5 4 8 8 C 1.38261 * 120.88808 * 0.02562 * 7 6 5 9 9 C 1.38533 * 119.22134 * 0.02562 * 8 7 6 10 10 C 1.38710 * 119.65489 * 270.02311 * 5 4 2 11 11 O 1.35908 * 120.47512 * 359.97438 * 10 5 4 12 12 C 1.42900 * 116.99840 * 185.95093 * 11 10 5 13 13 C 1.53934 * 113.73189 * 254.37069 * 12 11 10 14 14 N 1.47960 * 86.17917 * 221.92480 * 13 12 11 15 15 C 1.46905 * 111.00162 * 137.58817 * 14 13 12 16 16 C 1.50695 * 109.47157 * 70.63484 * 15 14 13 17 17 H 1.07998 * 120.00241 * 0.02562 * 16 15 14 18 18 C 1.37887 * 119.99791 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99512 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47440 * 59.99816 * 20 18 16 22 22 H 1.48501 * 109.46913 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47041 * 299.99890 * 20 18 16 24 24 C 1.47951 * 90.76547 * 24.68948 * 14 13 12 25 25 H 1.08998 * 109.47160 * 296.04242 * 1 2 3 26 26 H 1.09005 * 109.47321 * 56.04129 * 1 2 3 27 27 H 1.08996 * 109.47019 * 176.04085 * 1 2 3 28 28 H 1.08999 * 109.47548 * 183.95112 * 3 2 1 29 29 H 1.08997 * 109.47888 * 303.95978 * 3 2 1 30 30 H 1.09002 * 109.46775 * 63.95959 * 3 2 1 31 31 H 1.08998 * 109.47210 * 306.04521 * 4 2 1 32 32 H 1.08999 * 109.47127 * 186.04730 * 4 2 1 33 33 H 1.08001 * 119.55936 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.39000 * 179.97438 * 8 7 6 35 35 H 1.07994 * 120.81688 * 179.72757 * 9 8 7 36 36 H 1.08993 * 112.94050 * 26.08179 * 12 11 10 37 37 H 1.09006 * 113.75937 * 336.23843 * 13 12 11 38 38 H 1.09001 * 113.75923 * 107.60447 * 13 12 11 39 39 H 1.08998 * 109.46961 * 190.64143 * 15 14 13 40 40 H 1.09001 * 109.46802 * 310.63390 * 15 14 13 41 41 H 0.97003 * 119.99583 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.75860 * 220.99279 * 24 14 13 43 43 H 1.08999 * 113.76135 * 89.63205 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6370 -2.2205 0.9727 6 7 2.4593 -3.0263 0.3302 7 6 2.1873 -4.3053 0.1614 8 6 1.0185 -4.8537 0.6561 9 6 0.1258 -4.0420 1.3368 10 6 0.4451 -2.6974 1.4980 11 8 -0.3994 -1.8629 2.1595 12 6 -1.5408 -2.4554 2.7826 13 6 -2.8610 -2.1910 2.0364 14 7 -3.4565 -1.9682 3.3724 15 6 -4.3545 -0.8057 3.3614 16 6 -5.5966 -1.1379 2.5754 17 1 -5.7081 -2.1150 2.1291 18 6 -6.5909 -0.1943 2.4260 19 7 -6.4549 0.9957 2.9691 20 14 -8.1309 -0.6063 1.4524 21 1 -8.8222 -1.7590 2.0838 22 1 -9.0380 0.5694 1.4401 23 1 -7.7564 -0.9566 0.0587 24 6 -2.1317 -1.6097 3.9251 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5741 -0.8524 27 1 -0.3633 -1.0252 -0.0710 28 1 3.0827 1.3434 -0.0708 29 1 1.5897 1.9165 -0.8523 30 1 1.7044 1.8723 0.9234 31 1 1.5611 -0.3873 2.0627 32 1 3.0797 -0.6611 1.1755 33 1 2.8869 -4.9331 -0.3705 34 1 0.8037 -5.9024 0.5129 35 1 -0.7968 -4.4425 1.7302 36 1 -1.3857 -3.5015 3.0462 37 1 -2.8406 -1.2988 1.4104 38 1 -3.2561 -3.0656 1.5197 39 1 -4.6296 -0.5493 4.3844 40 1 -3.8473 0.0409 2.8986 41 1 -7.1545 1.6594 2.8644 42 1 -1.9442 -2.0198 4.9174 43 1 -1.8980 -0.5476 3.8515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225279343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:03 Heat of formation + Delta-G solvation = 48.642379 kcal Electronic energy + Delta-G solvation = -23628.767564 eV Core-core repulsion = 20290.013647 eV Total energy + Delta-G solvation = -3338.753918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95079 -39.40751 -37.22775 -37.02450 -32.94856 -32.48465 -30.95974 -29.22201 -27.49716 -27.23478 -25.92091 -25.34689 -23.58925 -23.02847 -21.53057 -21.07993 -19.48649 -18.29961 -16.99331 -16.47974 -16.35367 -15.96371 -15.30834 -14.97620 -14.81186 -14.70974 -14.61028 -14.31644 -13.61727 -13.57234 -13.01389 -12.83311 -12.44629 -12.34846 -12.23541 -12.05044 -11.99110 -11.77892 -11.55609 -11.47695 -11.38346 -10.96538 -10.76806 -10.38582 -10.35114 -9.83212 -9.73522 -9.56317 -9.27655 -8.57592 -8.45966 -8.21922 -7.98819 -6.12490 -4.15165 1.02992 1.23256 3.14137 3.27895 3.32237 3.35015 3.58457 4.13863 4.29333 4.34856 4.53066 4.56267 4.69831 4.78547 4.90035 5.10284 5.12883 5.19041 5.23854 5.27098 5.42392 5.48029 5.58274 5.68490 5.76810 5.80327 5.82684 5.89742 5.95386 6.00131 6.04933 6.16028 6.19558 6.27058 6.46620 6.49397 6.97016 7.00859 7.08548 7.33563 7.51074 7.75354 7.96508 7.98094 8.29412 8.91168 9.49731 10.98640 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.003997 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.914059 B = 7003.940543 C = 7703.820254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.539 5.539 3 C 0.026 3.974 4 C 0.112 3.888 5 C 0.105 3.895 6 N -0.435 5.435 7 C 0.052 3.948 8 C -0.132 4.132 9 C -0.168 4.168 10 C 0.097 3.903 11 O -0.294 6.294 12 C 0.039 3.961 13 C 0.010 3.990 14 N -0.472 5.472 15 C 0.164 3.836 16 C -0.515 4.515 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.009 3.991 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.155 0.845 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.001 0.999 41 H 0.263 0.737 42 H 0.088 0.912 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.265 -6.570 -3.652 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.263 5.263 3 C -0.122 4.122 4 C -0.016 4.016 5 C -0.036 4.036 6 N -0.144 5.144 7 C -0.106 4.106 8 C -0.152 4.152 9 C -0.194 4.194 10 C 0.048 3.952 11 O -0.205 6.205 12 C -0.017 4.017 13 C -0.119 4.119 14 N -0.197 5.197 15 C 0.038 3.962 16 C -0.553 4.553 17 H 0.080 0.920 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.120 4.120 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.173 0.827 34 H 0.153 0.847 35 H 0.161 0.839 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.685 -6.541 -4.042 19.284 hybrid contribution -1.848 0.320 0.208 1.887 sum 15.837 -6.221 -3.833 17.442 Atomic orbital electron populations 1.22430 0.86442 1.02530 1.00772 1.61992 1.08659 1.13512 1.42183 1.22365 1.00519 0.88596 1.00724 1.20783 1.00734 0.87509 0.92546 1.20481 0.89153 0.96385 0.97552 1.67459 1.31098 1.04583 1.11278 1.22570 0.96455 0.91366 1.00163 1.21988 0.94688 1.00937 0.97569 1.21791 1.01894 0.93066 1.02650 1.19981 0.91185 0.90051 0.93965 1.86285 1.34852 1.34751 1.64644 1.25034 0.82823 0.98519 0.95334 1.24220 0.90737 1.02356 0.94619 1.68604 1.05440 1.36996 1.08670 1.20210 0.91742 0.86140 0.98061 1.21016 1.02009 0.99370 1.32906 0.92031 1.24982 0.98640 0.94879 0.95869 1.69941 1.34333 1.04647 1.44602 0.86538 0.82549 0.77825 0.80406 1.20077 1.21215 1.20198 1.24149 0.91465 0.99194 0.97191 0.94602 0.91746 0.91471 0.91414 0.91265 0.95488 0.92541 0.89330 0.82747 0.84696 0.83946 0.88108 0.90355 0.89931 0.94721 0.98084 0.92708 0.89384 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 8.33 60.06 0.50 0.87 16 2 N -0.54 -7.13 5.01 -252.73 -1.27 -8.40 16 3 C 0.03 0.28 9.57 60.06 0.57 0.85 16 4 C 0.11 1.45 5.11 -4.98 -0.03 1.43 16 5 C 0.10 1.45 5.80 -82.41 -0.48 0.97 16 6 N -0.43 -5.90 10.27 -9.35 -0.10 -6.00 16 7 C 0.05 0.57 11.18 -17.54 -0.20 0.38 16 8 C -0.13 -1.36 10.11 -39.46 -0.40 -1.76 16 9 C -0.17 -2.02 9.10 -39.14 -0.36 -2.37 16 10 C 0.10 1.34 5.42 -39.07 -0.21 1.13 16 11 O -0.29 -4.33 7.51 -19.45 -0.15 -4.48 16 12 C 0.04 0.59 3.86 -25.80 -0.10 0.49 16 13 C 0.01 0.18 7.29 -2.77 -0.02 0.16 16 14 N -0.47 -9.77 6.25 -239.99 -1.50 -11.27 16 15 C 0.16 4.18 4.58 -4.98 -0.02 4.15 16 16 C -0.51 -14.22 8.84 -34.44 -0.30 -14.53 16 17 H 0.06 1.68 7.80 -52.49 -0.41 1.27 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 20 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.01 0.15 7.81 -2.77 -0.02 0.13 16 25 H 0.04 0.53 7.99 -51.93 -0.42 0.12 16 26 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 27 H 0.07 1.03 5.84 -51.93 -0.30 0.73 16 28 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 29 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 30 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.74 7.50 -51.93 -0.39 0.35 16 32 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 33 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.14 1.56 6.08 -52.49 -0.32 1.24 16 36 H 0.10 1.32 6.06 -51.93 -0.31 1.01 16 37 H 0.08 1.55 7.78 -51.93 -0.40 1.14 16 38 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.00 0.04 7.69 -51.93 -0.40 -0.36 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.07 1.30 7.79 -51.93 -0.40 0.89 16 LS Contribution 349.62 15.07 5.27 5.27 Total: -1.00 -30.59 349.62 -9.90 -40.49 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.71 Total: 0.12 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.16 Total: -6.57 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -2.13 Total: -51.17 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.15 Total: -4.48 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.59 -9.90 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225279343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.130 kcal (2) G-P(sol) polarization free energy of solvation -30.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds