Wall clock time and date at job start Tue Mar 31 2020 07:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99853 * 2 1 4 4 C 1.46891 * 111.00122 * 123.95732 * 2 1 3 5 5 C 1.50704 * 109.47461 * 66.04861 * 4 2 1 6 6 N 1.31842 * 119.65707 * 89.99338 * 5 4 2 7 7 C 1.31845 * 121.77739 * 180.02562 * 6 5 4 8 8 C 1.38261 * 120.88808 * 0.02562 * 7 6 5 9 9 C 1.38533 * 119.22134 * 0.02562 * 8 7 6 10 10 C 1.38710 * 119.65489 * 270.02311 * 5 4 2 11 11 O 1.35908 * 120.47512 * 359.97438 * 10 5 4 12 12 C 1.42900 * 116.99840 * 185.95093 * 11 10 5 13 13 C 1.53934 * 113.73189 * 254.37069 * 12 11 10 14 14 N 1.47960 * 86.17917 * 221.92480 * 13 12 11 15 15 C 1.46905 * 111.00162 * 137.58817 * 14 13 12 16 16 C 1.50695 * 109.47157 * 70.63484 * 15 14 13 17 17 H 1.07998 * 120.00241 * 0.02562 * 16 15 14 18 18 C 1.37887 * 119.99791 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99512 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47440 * 59.99816 * 20 18 16 22 22 H 1.48501 * 109.46913 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47041 * 299.99890 * 20 18 16 24 24 C 1.47951 * 90.76547 * 24.68948 * 14 13 12 25 25 H 1.08998 * 109.47160 * 296.04242 * 1 2 3 26 26 H 1.09005 * 109.47321 * 56.04129 * 1 2 3 27 27 H 1.08996 * 109.47019 * 176.04085 * 1 2 3 28 28 H 1.08999 * 109.47548 * 183.95112 * 3 2 1 29 29 H 1.08997 * 109.47888 * 303.95978 * 3 2 1 30 30 H 1.09002 * 109.46775 * 63.95959 * 3 2 1 31 31 H 1.08998 * 109.47210 * 306.04521 * 4 2 1 32 32 H 1.08999 * 109.47127 * 186.04730 * 4 2 1 33 33 H 1.08001 * 119.55936 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.39000 * 179.97438 * 8 7 6 35 35 H 1.07994 * 120.81688 * 179.72757 * 9 8 7 36 36 H 1.08993 * 112.94050 * 26.08179 * 12 11 10 37 37 H 1.09006 * 113.75937 * 336.23843 * 13 12 11 38 38 H 1.09001 * 113.75923 * 107.60447 * 13 12 11 39 39 H 1.08998 * 109.46961 * 190.64143 * 15 14 13 40 40 H 1.09001 * 109.46802 * 310.63390 * 15 14 13 41 41 H 0.97003 * 119.99583 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.75860 * 220.99279 * 24 14 13 43 43 H 1.08999 * 113.76135 * 89.63205 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6370 -2.2205 0.9727 6 7 2.4593 -3.0263 0.3302 7 6 2.1873 -4.3053 0.1614 8 6 1.0185 -4.8537 0.6561 9 6 0.1258 -4.0420 1.3368 10 6 0.4451 -2.6974 1.4980 11 8 -0.3994 -1.8629 2.1595 12 6 -1.5408 -2.4554 2.7826 13 6 -2.8610 -2.1910 2.0364 14 7 -3.4565 -1.9682 3.3724 15 6 -4.3545 -0.8057 3.3614 16 6 -5.5966 -1.1379 2.5754 17 1 -5.7081 -2.1150 2.1291 18 6 -6.5909 -0.1943 2.4260 19 7 -6.4549 0.9957 2.9691 20 14 -8.1309 -0.6063 1.4524 21 1 -8.8222 -1.7590 2.0838 22 1 -9.0380 0.5694 1.4401 23 1 -7.7564 -0.9566 0.0587 24 6 -2.1317 -1.6097 3.9251 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5741 -0.8524 27 1 -0.3633 -1.0252 -0.0710 28 1 3.0827 1.3434 -0.0708 29 1 1.5897 1.9165 -0.8523 30 1 1.7044 1.8723 0.9234 31 1 1.5611 -0.3873 2.0627 32 1 3.0797 -0.6611 1.1755 33 1 2.8869 -4.9331 -0.3705 34 1 0.8037 -5.9024 0.5129 35 1 -0.7968 -4.4425 1.7302 36 1 -1.3857 -3.5015 3.0462 37 1 -2.8406 -1.2988 1.4104 38 1 -3.2561 -3.0656 1.5197 39 1 -4.6296 -0.5493 4.3844 40 1 -3.8473 0.0409 2.8986 41 1 -7.1545 1.6594 2.8644 42 1 -1.9442 -2.0198 4.9174 43 1 -1.8980 -0.5476 3.8515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225279343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:03 Heat of formation + Delta-G solvation = 25.790087 kcal Electronic energy + Delta-G solvation = -23629.758514 eV Core-core repulsion = 20290.013647 eV Total energy + Delta-G solvation = -3339.744867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.01286 -40.70114 -38.35998 -38.12848 -35.03410 -33.39425 -32.05549 -30.94631 -28.55478 -28.16469 -27.53641 -26.91634 -24.88931 -24.01339 -23.06159 -22.16422 -20.87023 -19.40194 -18.61807 -17.97983 -17.33398 -17.10318 -16.78169 -16.38763 -16.01945 -15.92822 -15.69084 -15.62794 -14.95040 -14.79118 -14.19574 -14.00058 -13.93564 -13.77901 -13.70701 -13.33336 -13.18423 -12.98516 -12.82394 -12.65533 -12.56909 -12.53022 -12.49813 -12.19570 -11.66418 -11.59015 -11.23791 -10.68186 -10.65071 -10.50735 -9.74921 -9.47180 -9.23486 -8.26961 -6.37989 0.12772 0.30115 1.38659 1.41455 1.49560 2.00513 2.36837 2.65983 3.06106 3.12766 3.17835 3.34144 3.36323 3.61440 3.79374 3.91927 4.03031 4.18645 4.20858 4.30809 4.39578 4.46434 4.50262 4.50726 4.60108 4.67176 4.68148 4.74961 4.79352 4.82317 4.86912 4.97618 4.98871 5.05451 5.11121 5.16482 5.45183 5.56074 5.70409 5.93707 6.01645 6.02069 6.25568 6.30024 6.76010 7.04685 7.32124 8.84652 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.003997 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.914059 B = 7003.940543 C = 7703.820254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.547 5.547 3 C 0.025 3.975 4 C 0.114 3.886 5 C 0.088 3.912 6 N -0.457 5.457 7 C 0.051 3.949 8 C -0.122 4.122 9 C -0.172 4.172 10 C 0.075 3.925 11 O -0.304 6.304 12 C 0.068 3.932 13 C 0.006 3.994 14 N -0.483 5.483 15 C 0.180 3.820 16 C -0.531 4.531 17 H 0.062 0.938 18 C 0.005 3.995 19 N -0.932 5.932 20 Si 0.969 3.031 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.267 1.267 24 C 0.006 3.994 25 H 0.019 0.981 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.026 0.974 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.186 0.814 34 H 0.172 0.828 35 H 0.155 0.845 36 H 0.130 0.870 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.006 0.994 40 H -0.026 1.026 41 H 0.266 0.734 42 H 0.112 0.888 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.996 -8.897 -4.682 20.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.272 5.272 3 C -0.122 4.122 4 C -0.014 4.014 5 C -0.051 4.051 6 N -0.166 5.166 7 C -0.106 4.106 8 C -0.142 4.142 9 C -0.198 4.198 10 C 0.027 3.973 11 O -0.216 6.216 12 C 0.012 3.988 13 C -0.123 4.123 14 N -0.207 5.207 15 C 0.053 3.947 16 C -0.569 4.569 17 H 0.081 0.919 18 C -0.194 4.194 19 N -0.572 5.572 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.192 1.192 24 C -0.122 4.122 25 H 0.037 0.963 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.203 0.797 34 H 0.189 0.811 35 H 0.172 0.828 36 H 0.148 0.852 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.024 0.976 40 H -0.009 1.009 41 H 0.075 0.925 42 H 0.131 0.869 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.443 -8.871 -5.070 21.084 hybrid contribution -1.943 0.979 0.495 2.231 sum 16.500 -7.892 -4.576 18.854 Atomic orbital electron populations 1.22280 0.87395 1.01460 1.00082 1.62027 1.07803 1.14898 1.42433 1.22441 1.01454 0.87381 1.00966 1.20770 1.01069 0.87553 0.92002 1.20555 0.89559 0.96734 0.98245 1.67484 1.31452 1.05820 1.11882 1.23201 0.97262 0.90821 0.99365 1.22381 0.93569 1.02440 0.95782 1.22048 1.02688 0.92416 1.02627 1.20126 0.91293 0.90894 0.95019 1.86263 1.34777 1.35335 1.65187 1.24658 0.81854 0.99303 0.93015 1.24209 0.92933 1.01715 0.93477 1.68477 1.06887 1.34598 1.10745 1.19840 0.92186 0.87044 0.95622 1.21356 1.02972 0.99466 1.33147 0.91941 1.25914 1.02052 0.94619 0.96810 1.70071 1.35522 1.05711 1.45917 0.85439 0.78320 0.77837 0.79089 1.19138 1.20724 1.19217 1.24206 0.89623 0.99164 0.99254 0.96268 0.91256 0.92859 0.89823 0.90613 0.95584 0.93455 0.88446 0.79664 0.81065 0.82755 0.85239 0.92776 0.88801 0.97595 1.00867 0.92537 0.86945 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.05 8.33 127.69 1.06 2.12 16 2 N -0.55 -14.46 5.01 -953.50 -4.78 -19.23 16 3 C 0.03 0.53 9.57 127.69 1.22 1.75 16 4 C 0.11 2.95 5.11 85.56 0.44 3.38 16 5 C 0.09 2.38 5.80 42.67 0.25 2.63 16 6 N -0.46 -11.63 10.27 -183.49 -1.88 -13.51 16 7 C 0.05 0.97 11.18 84.70 0.95 1.92 16 8 C -0.12 -2.07 10.11 22.35 0.23 -1.85 16 9 C -0.17 -3.68 9.10 22.56 0.21 -3.47 16 10 C 0.07 1.98 5.42 22.60 0.12 2.11 16 11 O -0.30 -8.92 7.51 -92.52 -0.70 -9.62 16 12 C 0.07 1.99 3.86 31.24 0.12 2.11 16 13 C 0.01 0.21 7.29 86.41 0.63 0.84 16 14 N -0.48 -20.27 6.25 -916.41 -5.73 -26.00 16 15 C 0.18 9.55 4.58 85.55 0.39 9.94 16 16 C -0.53 -29.97 8.84 25.60 0.23 -29.75 16 17 H 0.06 3.43 7.80 -2.91 -0.02 3.41 16 18 C 0.00 0.27 5.46 84.66 0.46 0.73 16 19 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 20 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 C 0.01 0.21 7.81 86.41 0.67 0.89 16 25 H 0.02 0.60 7.99 -2.39 -0.02 0.58 16 26 H 0.07 1.88 8.12 -2.38 -0.02 1.86 16 27 H 0.05 1.68 5.84 -2.39 -0.01 1.66 16 28 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 29 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 30 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 1.28 7.50 -2.39 -0.02 1.26 16 32 H 0.10 2.26 8.06 -2.39 -0.02 2.24 16 33 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.15 2.87 6.08 -2.91 -0.02 2.85 16 36 H 0.13 3.05 6.06 -2.39 -0.01 3.04 16 37 H 0.05 2.24 7.78 -2.38 -0.02 2.22 16 38 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H -0.03 -1.51 7.69 -2.39 -0.02 -1.53 16 41 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 42 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.06 2.22 7.79 -2.39 -0.02 2.20 16 Total: -1.00 -67.59 349.62 -2.81 -70.40 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.99 Total: 14.37 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 6.98 Total: -6.66 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -12.11 Total: -114.41 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.70 Total: -9.62 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.59 -2.81 -70.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225279343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.193 kcal (2) G-P(sol) polarization free energy of solvation -67.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds